Wall clock time and date at job start Tue Mar 31 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99710 * 2 1 4 4 C 1.53007 * 109.46899 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46995 * 65.00338 * 4 3 2 6 6 C 1.46498 * 120.00136 * 269.99873 * 5 4 3 7 7 C 1.50705 * 109.47067 * 270.00331 * 6 5 4 8 8 H 1.08001 * 120.00144 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99709 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00335 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99665 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47229 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46959 * 120.00273 * 11 9 7 14 14 H 1.48498 * 109.47383 * 240.00065 * 11 9 7 15 15 C 1.34783 * 119.99896 * 90.00029 * 5 4 3 16 16 O 1.21612 * 119.99652 * 179.97438 * 15 5 4 17 17 C 1.47098 * 120.00090 * 359.97438 * 15 5 4 18 18 C 1.32993 * 119.99743 * 180.02562 * 17 15 5 19 19 C 1.50704 * 119.99690 * 179.97438 * 18 17 15 20 20 C 1.54892 * 110.59841 * 123.31679 * 19 18 17 21 21 C 1.54888 * 102.74611 * 156.67350 * 20 19 18 22 22 C 1.54265 * 104.19721 * 322.05788 * 21 20 19 23 23 C 1.53873 * 106.59997 * 23.61451 * 22 21 20 24 24 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47329 * 299.99490 * 1 2 3 26 26 H 1.09006 * 109.47227 * 59.99697 * 1 2 3 27 27 H 1.09006 * 109.47305 * 60.00698 * 3 2 1 28 28 H 1.08994 * 109.47761 * 300.00347 * 3 2 1 29 29 H 1.08999 * 109.47384 * 305.00037 * 4 3 2 30 30 H 1.09004 * 109.46554 * 185.00570 * 4 3 2 31 31 H 1.08999 * 109.46934 * 29.99824 * 6 5 4 32 32 H 1.08994 * 109.47567 * 150.00149 * 6 5 4 33 33 H 0.96998 * 120.00157 * 179.97438 * 10 9 7 34 34 H 1.08001 * 119.99882 * 0.02562 * 17 15 5 35 35 H 1.08001 * 120.00374 * 359.97438 * 18 17 15 36 36 H 1.09002 * 110.43639 * 0.69971 * 19 18 17 37 37 H 1.08992 * 110.75663 * 274.99212 * 20 19 18 38 38 H 1.09000 * 110.75339 * 38.36236 * 20 19 18 39 39 H 1.09007 * 110.48520 * 203.37936 * 21 20 19 40 40 H 1.08996 * 110.48377 * 80.74349 * 21 20 19 41 41 H 1.08993 * 110.03585 * 264.31946 * 22 21 20 42 42 H 1.09006 * 110.07186 * 142.91875 * 22 21 20 43 43 H 1.09002 * 110.03017 * 240.71676 * 23 22 21 44 44 H 1.08992 * 110.03600 * 119.28231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.1052 -0.8919 -1.3429 7 6 5.5010 -1.2976 -0.9450 8 1 6.2198 -0.5457 -0.6545 9 6 5.8603 -2.6287 -0.9519 10 7 4.9852 -3.5442 -1.3061 11 14 7.5906 -3.1316 -0.4595 12 1 8.3764 -1.9217 -0.1072 13 1 7.5272 -4.0391 0.7142 14 1 8.2437 -3.8337 -1.5933 15 6 4.2614 1.3340 -2.3218 16 8 4.6273 0.8192 -3.3611 17 6 4.1308 2.7964 -2.2315 18 6 4.4123 3.5555 -3.2865 19 6 4.2780 5.0537 -3.1942 20 6 5.6173 5.7441 -3.5528 21 6 5.1653 7.1580 -3.9951 22 6 3.8521 6.9114 -4.7662 23 6 3.2879 5.5736 -4.2568 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8464 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 3.8515 0.5683 0.8409 30 1 3.9784 2.1766 0.0890 31 1 3.3853 -1.3628 -0.6735 32 1 3.9120 -1.2112 -2.3669 33 1 5.2381 -4.4807 -1.3113 34 1 3.8063 3.2536 -1.3084 35 1 4.7373 3.0984 -4.2095 36 1 3.9537 5.3459 -2.1954 37 1 6.2679 5.8018 -2.6803 38 1 6.1132 5.2232 -4.3719 39 1 5.9119 7.6104 -4.6480 40 1 4.9844 7.7900 -3.1257 41 1 4.0531 6.8491 -5.8356 42 1 3.1441 7.7157 -4.5659 43 1 3.2151 4.8618 -5.0792 44 1 2.3065 5.7286 -3.8087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843788450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:06 Heat of formation + Delta-G solvation = -80.592789 kcal Electronic energy + Delta-G solvation = -22290.714027 eV Core-core repulsion = 19014.977963 eV Total energy + Delta-G solvation = -3275.736064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.18643 -38.31108 -37.41798 -34.77835 -33.20987 -32.47643 -29.54602 -28.82937 -28.47895 -26.84414 -25.88594 -23.47174 -22.64756 -21.22790 -20.59726 -19.67765 -18.15136 -16.88142 -16.35422 -16.19774 -15.82898 -15.55924 -14.98555 -14.90495 -14.63203 -14.24370 -13.71433 -13.52508 -13.40650 -13.01885 -12.34261 -12.15325 -11.88016 -11.75157 -11.62191 -11.57211 -11.37781 -11.23546 -11.20372 -11.13010 -10.85270 -10.80265 -10.74401 -10.58597 -10.34314 -10.06508 -9.50388 -9.40083 -9.03221 -8.85355 -8.31286 -7.52347 -5.92116 -3.96048 1.80837 3.36396 3.43328 3.47663 3.96156 4.06229 4.15021 4.45388 4.53058 4.54699 4.59836 5.02666 5.16193 5.29227 5.32606 5.38473 5.41122 5.42074 5.43267 5.49291 5.51207 5.54665 5.56249 5.60722 5.69085 5.73436 5.75328 5.80044 5.88878 5.90668 6.05162 6.16113 6.20632 6.29482 6.63423 6.70412 7.36941 7.44957 7.64148 7.70457 8.06108 8.38277 8.57408 9.02858 9.21724 9.67773 11.15881 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.004431 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.083356 B = 6318.088471 C = 7756.990756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.044 3.956 4 C 0.112 3.888 5 N -0.584 5.584 6 C 0.249 3.751 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.531 3.469 16 O -0.546 6.546 17 C -0.204 4.204 18 C -0.078 4.078 19 C -0.068 4.068 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.117 4.117 24 H 0.084 0.916 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 20.098 0.277 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.034 4.034 4 C -0.013 4.013 5 N -0.314 5.314 6 C 0.130 3.870 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.320 3.680 16 O -0.426 6.426 17 C -0.225 4.225 18 C -0.098 4.098 19 C -0.087 4.087 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.155 4.155 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.336 19.412 -0.271 20.422 hybrid contribution 0.620 -0.152 0.441 0.776 sum -5.716 19.260 0.170 20.091 Atomic orbital electron populations 1.22696 0.82103 1.02574 0.99071 1.88105 1.18684 1.26983 1.95131 1.23132 0.95377 0.85411 0.99496 1.21531 0.91140 0.99085 0.89544 1.48076 1.63701 1.09886 1.09751 1.19309 0.96696 0.72183 0.98846 1.21526 0.97483 0.92215 1.45035 0.92602 1.24918 0.97330 0.96429 0.95457 1.69957 1.34210 1.00875 1.48274 0.86485 0.84690 0.78431 0.78034 1.19885 1.21050 1.20985 1.18439 0.78665 0.86818 0.84120 1.90741 1.47349 1.75039 1.29467 1.22972 1.05516 0.94376 0.99651 1.23587 0.93582 0.93898 0.98760 1.21218 0.96047 0.91698 0.99708 1.22543 0.96338 0.95059 1.01502 1.22368 0.96999 0.97076 0.99806 1.22147 0.96939 0.97168 0.99987 1.22176 0.98278 0.96590 0.98459 0.89783 0.94713 0.94627 0.93185 0.93614 0.89070 0.89935 0.93643 0.94314 0.92949 0.86345 0.85731 0.90227 0.91284 0.90919 0.91691 0.91705 0.91839 0.92006 0.91245 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.60 9.53 -35.23 -0.34 -6.93 16 3 C 0.04 0.65 6.28 37.16 0.23 0.88 16 4 C 0.11 1.89 5.53 -4.04 -0.02 1.87 16 5 N -0.58 -13.06 2.42 -176.46 -0.43 -13.48 16 6 C 0.25 6.88 4.98 -5.19 -0.03 6.85 16 7 C -0.52 -15.49 9.39 -34.44 -0.32 -15.81 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 11 Si 0.90 22.55 29.54 -169.99 -5.02 17.53 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 C 0.53 11.72 7.62 -12.66 -0.10 11.62 16 16 O -0.55 -14.52 15.80 5.27 0.08 -14.44 16 17 C -0.20 -3.26 8.83 -37.81 -0.33 -3.60 16 18 C -0.08 -1.11 8.27 -36.12 -0.30 -1.41 16 19 C -0.07 -0.72 3.18 -90.11 -0.29 -1.00 16 20 C -0.12 -1.12 6.32 -24.74 -0.16 -1.28 16 21 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 22 C -0.12 -1.00 6.80 -25.61 -0.17 -1.17 16 23 C -0.12 -1.10 6.36 -25.61 -0.16 -1.27 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 30 H 0.08 1.11 6.10 -51.93 -0.32 0.79 16 31 H 0.05 1.30 7.11 -51.93 -0.37 0.93 16 32 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.12 1.51 6.06 -52.49 -0.32 1.19 16 35 H 0.12 1.99 7.49 -52.49 -0.39 1.60 16 36 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 39 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.70 7.83 -51.93 -0.41 0.30 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -35.17 360.44 -7.97 -43.14 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.63 Total: -2.17 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -0.80 Total: -2.25 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.31 Total: -40.30 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.25 Total: -21.37 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.17 -7.97 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843788450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.457 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds