Wall clock time and date at job start Tue Mar 31 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99710 * 2 1 4 4 C 1.53007 * 109.46899 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46995 * 65.00338 * 4 3 2 6 6 C 1.46498 * 120.00136 * 269.99873 * 5 4 3 7 7 C 1.50705 * 109.47067 * 270.00331 * 6 5 4 8 8 H 1.08001 * 120.00144 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99709 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00335 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99665 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47229 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46959 * 120.00273 * 11 9 7 14 14 H 1.48498 * 109.47383 * 240.00065 * 11 9 7 15 15 C 1.34783 * 119.99896 * 90.00029 * 5 4 3 16 16 O 1.21612 * 119.99652 * 179.97438 * 15 5 4 17 17 C 1.47098 * 120.00090 * 359.97438 * 15 5 4 18 18 C 1.32993 * 119.99743 * 180.02562 * 17 15 5 19 19 C 1.50704 * 119.99690 * 179.97438 * 18 17 15 20 20 C 1.54892 * 110.59841 * 123.31679 * 19 18 17 21 21 C 1.54888 * 102.74611 * 156.67350 * 20 19 18 22 22 C 1.54265 * 104.19721 * 322.05788 * 21 20 19 23 23 C 1.53873 * 106.59997 * 23.61451 * 22 21 20 24 24 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47329 * 299.99490 * 1 2 3 26 26 H 1.09006 * 109.47227 * 59.99697 * 1 2 3 27 27 H 1.09006 * 109.47305 * 60.00698 * 3 2 1 28 28 H 1.08994 * 109.47761 * 300.00347 * 3 2 1 29 29 H 1.08999 * 109.47384 * 305.00037 * 4 3 2 30 30 H 1.09004 * 109.46554 * 185.00570 * 4 3 2 31 31 H 1.08999 * 109.46934 * 29.99824 * 6 5 4 32 32 H 1.08994 * 109.47567 * 150.00149 * 6 5 4 33 33 H 0.96998 * 120.00157 * 179.97438 * 10 9 7 34 34 H 1.08001 * 119.99882 * 0.02562 * 17 15 5 35 35 H 1.08001 * 120.00374 * 359.97438 * 18 17 15 36 36 H 1.09002 * 110.43639 * 0.69971 * 19 18 17 37 37 H 1.08992 * 110.75663 * 274.99212 * 20 19 18 38 38 H 1.09000 * 110.75339 * 38.36236 * 20 19 18 39 39 H 1.09007 * 110.48520 * 203.37936 * 21 20 19 40 40 H 1.08996 * 110.48377 * 80.74349 * 21 20 19 41 41 H 1.08993 * 110.03585 * 264.31946 * 22 21 20 42 42 H 1.09006 * 110.07186 * 142.91875 * 22 21 20 43 43 H 1.09002 * 110.03017 * 240.71676 * 23 22 21 44 44 H 1.08992 * 110.03600 * 119.28231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.1052 -0.8919 -1.3429 7 6 5.5010 -1.2976 -0.9450 8 1 6.2198 -0.5457 -0.6545 9 6 5.8603 -2.6287 -0.9519 10 7 4.9852 -3.5442 -1.3061 11 14 7.5906 -3.1316 -0.4595 12 1 8.3764 -1.9217 -0.1072 13 1 7.5272 -4.0391 0.7142 14 1 8.2437 -3.8337 -1.5933 15 6 4.2614 1.3340 -2.3218 16 8 4.6273 0.8192 -3.3611 17 6 4.1308 2.7964 -2.2315 18 6 4.4123 3.5555 -3.2865 19 6 4.2780 5.0537 -3.1942 20 6 5.6173 5.7441 -3.5528 21 6 5.1653 7.1580 -3.9951 22 6 3.8521 6.9114 -4.7662 23 6 3.2879 5.5736 -4.2568 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8464 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 3.8515 0.5683 0.8409 30 1 3.9784 2.1766 0.0890 31 1 3.3853 -1.3628 -0.6735 32 1 3.9120 -1.2112 -2.3669 33 1 5.2381 -4.4807 -1.3113 34 1 3.8063 3.2536 -1.3084 35 1 4.7373 3.0984 -4.2095 36 1 3.9537 5.3459 -2.1954 37 1 6.2679 5.8018 -2.6803 38 1 6.1132 5.2232 -4.3719 39 1 5.9119 7.6104 -4.6480 40 1 4.9844 7.7900 -3.1257 41 1 4.0531 6.8491 -5.8356 42 1 3.1441 7.7157 -4.5659 43 1 3.2151 4.8618 -5.0792 44 1 2.3065 5.7286 -3.8087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843788450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:05 Heat of formation + Delta-G solvation = -103.176115 kcal Electronic energy + Delta-G solvation = -22291.693314 eV Core-core repulsion = 19014.977963 eV Total energy + Delta-G solvation = -3276.715351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79157 -39.18657 -38.71209 -36.54393 -34.88341 -34.16812 -31.12746 -29.72157 -29.52657 -28.46863 -27.09474 -25.33601 -24.05664 -22.59020 -21.28718 -20.63997 -19.66677 -18.64655 -18.24874 -17.52751 -17.01068 -16.64458 -16.57334 -16.11995 -15.95589 -15.77475 -15.29279 -14.63424 -14.37187 -14.27246 -14.22430 -13.65669 -13.36575 -13.07377 -12.93563 -12.77154 -12.69631 -12.59126 -12.50991 -12.24928 -12.18016 -11.98246 -11.93557 -11.89807 -11.66092 -11.52956 -11.24132 -10.65950 -10.62825 -10.52595 -10.26160 -9.37840 -8.19518 -6.35068 0.48973 1.35345 1.38207 1.50393 2.29971 2.47447 2.49294 2.98618 3.09435 3.55439 3.77433 3.82656 3.98337 4.13802 4.18651 4.31660 4.42137 4.46618 4.53992 4.54439 4.59863 4.60740 4.63859 4.68775 4.72164 4.85768 4.87783 4.96201 5.01162 5.12807 5.14833 5.25601 5.27818 5.33861 5.36025 5.51966 5.54860 5.59733 5.62294 5.90169 6.10020 6.35696 6.73964 6.85391 7.29660 7.50356 8.87836 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.004431 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.083356 B = 6318.088471 C = 7756.990756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.046 3.954 4 C 0.104 3.896 5 N -0.591 5.591 6 C 0.271 3.729 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.004 3.996 10 N -0.929 5.929 11 Si 0.971 3.029 12 H -0.266 1.266 13 H -0.268 1.268 14 H -0.281 1.281 15 C 0.519 3.481 16 O -0.611 6.611 17 C -0.215 4.215 18 C -0.052 4.052 19 C -0.064 4.064 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.119 4.119 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.028 0.972 32 H -0.015 1.015 33 H 0.266 0.734 34 H 0.162 0.838 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 23.268 1.988 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.031 4.031 4 C -0.019 4.019 5 N -0.319 5.319 6 C 0.149 3.851 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.194 4.194 10 N -0.569 5.569 11 Si 0.795 3.205 12 H -0.190 1.190 13 H -0.193 1.193 14 H -0.207 1.207 15 C 0.311 3.689 16 O -0.495 6.495 17 C -0.236 4.236 18 C -0.072 4.072 19 C -0.083 4.083 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.156 4.156 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.046 0.954 32 H 0.003 0.997 33 H 0.075 0.925 34 H 0.179 0.821 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.228 22.624 1.482 23.513 hybrid contribution 0.526 -1.120 -0.166 1.248 sum -5.702 21.504 1.316 22.286 Atomic orbital electron populations 1.22851 0.80039 1.03030 1.00838 1.88043 1.21195 1.29140 1.95534 1.23198 0.93322 0.84747 1.01860 1.21930 0.93353 1.00350 0.86231 1.48050 1.63841 1.07897 1.12140 1.18637 0.95622 0.75931 0.94877 1.21792 0.98207 0.92707 1.45519 0.92924 1.25914 1.02092 0.96322 0.95073 1.70090 1.36588 1.01406 1.48841 0.85327 0.78770 0.78359 0.78071 1.18994 1.19267 1.20691 1.19477 0.77146 0.89407 0.82887 1.90696 1.50336 1.76724 1.31775 1.22785 1.08462 0.90102 1.02218 1.23825 0.90245 0.96276 0.96903 1.21311 0.97104 0.88354 1.01481 1.22579 0.95814 0.96056 1.01372 1.22359 0.96953 0.95940 1.00445 1.22151 0.97315 0.96663 0.99935 1.22201 0.98719 0.97013 0.97701 0.90201 0.91728 0.93888 0.88709 0.92958 0.90563 0.85621 0.95384 0.99707 0.92498 0.82066 0.88518 0.87838 0.90684 0.92334 0.91024 0.90287 0.91975 0.90434 0.92818 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.97 16 2 O -0.42 -14.93 9.53 -148.98 -1.42 -16.35 16 3 C 0.05 1.26 6.28 71.98 0.45 1.71 16 4 C 0.10 3.40 5.53 86.38 0.48 3.88 16 5 N -0.59 -27.23 2.42 -830.44 -2.01 -29.24 16 6 C 0.27 15.92 4.98 85.64 0.43 16.35 16 7 C -0.54 -33.42 9.39 25.60 0.24 -33.18 16 8 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 9 C 0.00 0.27 5.46 84.66 0.46 0.74 16 10 N -0.93 -59.33 13.29 21.45 0.28 -59.05 16 11 Si 0.97 46.98 29.54 68.60 2.03 49.01 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 15 C 0.52 23.66 7.62 86.57 0.66 24.32 16 16 O -0.61 -34.68 15.80 -4.07 -0.06 -34.74 16 17 C -0.22 -6.60 8.83 23.43 0.21 -6.39 16 18 C -0.05 -1.44 8.27 24.52 0.20 -1.24 16 19 C -0.06 -1.17 3.18 -10.46 -0.03 -1.20 16 20 C -0.12 -2.03 6.32 31.89 0.20 -1.83 16 21 C -0.12 -1.51 6.83 31.67 0.22 -1.29 16 22 C -0.12 -1.61 6.80 31.32 0.21 -1.39 16 23 C -0.12 -1.94 6.36 31.32 0.20 -1.74 16 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 30 H 0.13 2.96 6.10 -2.38 -0.01 2.94 16 31 H 0.03 1.72 7.11 -2.39 -0.02 1.70 16 32 H -0.02 -1.04 7.42 -2.39 -0.02 -1.06 16 33 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 34 H 0.16 3.46 6.06 -2.91 -0.02 3.45 16 35 H 0.10 3.23 7.49 -2.91 -0.02 3.20 16 36 H 0.10 1.48 7.87 -2.39 -0.02 1.47 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.14 8.05 -2.39 -0.02 1.12 16 39 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.05 1.04 7.83 -2.39 -0.02 1.02 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -83.00 360.44 4.94 -78.06 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.95 Total: 11.61 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.17 Total: 0.69 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -1.72 Total: -88.28 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -1.48 Total: -51.09 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -83.00 4.94 -78.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843788450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.115 kcal (2) G-P(sol) polarization free energy of solvation -83.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds