Wall clock time and date at job start Tue Mar 31 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00148 * 2 1 4 4 C 1.53003 * 109.47352 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46844 * 65.00061 * 4 3 2 6 6 C 1.46497 * 119.99826 * 90.00351 * 5 4 3 7 7 C 1.50699 * 109.47344 * 90.00040 * 6 5 4 8 8 H 1.07998 * 119.99634 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99948 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00392 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 119.99698 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46837 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47004 * 119.99858 * 11 9 7 14 14 H 1.48499 * 109.46896 * 239.99933 * 11 9 7 15 15 C 1.34771 * 120.00160 * 270.00418 * 5 4 3 16 16 O 1.21618 * 120.00165 * 180.02562 * 15 5 4 17 17 C 1.47106 * 120.00179 * 359.97438 * 15 5 4 18 18 C 1.32993 * 119.99995 * 186.54524 * 17 15 5 19 19 C 1.50695 * 120.00225 * 17.81161 * 18 17 15 20 20 C 1.54268 * 110.03433 * 251.01971 * 19 18 17 21 21 C 1.54896 * 104.19407 * 217.10463 * 20 19 18 22 22 C 1.54886 * 102.74855 * 37.94430 * 21 20 19 23 23 C 1.53874 * 110.03204 * 133.85144 * 19 18 17 24 24 H 1.09006 * 109.47005 * 59.99462 * 1 2 3 25 25 H 1.08995 * 109.47232 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46965 * 299.99861 * 1 2 3 27 27 H 1.09005 * 109.47111 * 60.00331 * 3 2 1 28 28 H 1.08996 * 109.47453 * 300.00605 * 3 2 1 29 29 H 1.08996 * 109.46885 * 305.00698 * 4 3 2 30 30 H 1.08998 * 109.47505 * 185.00426 * 4 3 2 31 31 H 1.08997 * 109.47155 * 210.00342 * 6 5 4 32 32 H 1.09001 * 109.47228 * 329.99618 * 6 5 4 33 33 H 0.97001 * 120.00525 * 180.02562 * 10 9 7 34 34 H 1.07994 * 119.99511 * 6.53879 * 17 15 5 35 35 H 1.08000 * 119.99860 * 197.81754 * 18 17 15 36 36 H 1.08999 * 110.01650 * 12.46487 * 19 18 17 37 37 H 1.09001 * 110.48365 * 335.78483 * 20 19 18 38 38 H 1.09000 * 110.48568 * 98.43085 * 20 19 18 39 39 H 1.08993 * 110.75687 * 279.62680 * 21 20 19 40 40 H 1.09000 * 110.75140 * 156.25483 * 21 20 19 41 41 H 1.08997 * 110.48445 * 203.37784 * 22 21 20 42 42 H 1.08998 * 110.60176 * 80.78495 * 22 21 20 43 43 H 1.08999 * 110.03376 * 238.57050 * 23 19 18 44 44 H 1.09002 * 110.03598 * 359.95250 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2883 1.3998 -2.4129 7 6 5.7462 1.7802 -2.3817 8 1 6.3773 1.4342 -1.5765 9 6 6.2739 2.5707 -3.3805 10 7 5.5053 2.9924 -4.3607 11 14 8.0810 3.0428 -3.3414 12 1 8.7226 2.4457 -2.1426 13 1 8.7514 2.5368 -4.5660 14 1 8.2051 4.5214 -3.2840 15 6 4.0958 -0.7759 -1.3332 16 8 4.4625 -1.2912 -2.3721 17 6 3.7834 -1.6153 -0.1662 18 6 4.0242 -2.9227 -0.2039 19 6 4.9621 -3.4867 -1.2398 20 6 4.1674 -4.2868 -2.2925 21 6 5.0876 -5.4853 -2.6329 22 6 5.7060 -5.8425 -1.2585 23 6 5.9404 -4.4758 -0.5824 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8508 0.5684 0.8426 30 1 3.9786 2.1765 0.0903 31 1 4.0772 0.8447 -3.3269 32 1 3.6768 2.3017 -2.3863 33 1 5.8766 3.5482 -5.0636 34 1 3.3587 -1.1697 0.7211 35 1 3.5475 -3.5803 0.5080 36 1 5.5144 -2.6799 -1.7217 37 1 3.2241 -4.6369 -1.8732 38 1 3.9894 -3.6786 -3.1794 39 1 5.8624 -5.1889 -3.3398 40 1 4.5058 -6.3202 -3.0234 41 1 6.6508 -6.3697 -1.3908 42 1 5.0131 -6.4448 -0.6710 43 1 6.9675 -4.1496 -0.7460 44 1 5.7374 -4.5474 0.4861 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843788451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:08 Heat of formation + Delta-G solvation = -69.654616 kcal Electronic energy + Delta-G solvation = -23004.993340 eV Core-core repulsion = 19729.731590 eV Total energy + Delta-G solvation = -3275.261749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.32744 -37.95553 -37.28453 -34.82467 -32.88582 -32.42202 -29.52707 -28.38677 -28.14576 -26.76409 -26.05257 -23.44885 -22.63351 -20.95411 -20.38811 -19.60645 -17.82043 -16.73394 -16.39525 -16.19008 -15.59404 -15.29087 -15.04908 -14.79496 -14.55344 -14.13490 -13.41975 -13.15602 -13.08890 -12.90126 -12.38491 -12.22481 -12.13886 -11.76967 -11.62270 -11.33335 -11.14340 -10.98305 -10.92575 -10.85543 -10.73343 -10.56351 -10.43712 -10.34487 -10.25435 -9.99836 -9.57495 -9.45841 -8.71875 -8.41172 -8.37707 -7.51393 -6.01162 -4.05695 1.98286 3.31195 3.39021 3.43258 3.94964 4.12897 4.21627 4.49271 4.92185 4.96854 5.00149 5.24194 5.28440 5.33542 5.39602 5.42346 5.49850 5.58390 5.65730 5.70521 5.72096 5.84561 5.86806 5.90424 5.99169 6.01477 6.06954 6.10902 6.17391 6.22611 6.31851 6.52165 6.66832 6.77038 6.84923 7.08433 7.24741 7.30631 7.53336 7.67545 7.96878 8.28336 8.57177 8.96288 9.28649 9.60171 11.06622 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.006276 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.633652 B = 4460.491672 C = 6362.367694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.040 3.960 4 C 0.115 3.885 5 N -0.593 5.593 6 C 0.246 3.754 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.544 3.456 16 O -0.537 6.537 17 C -0.192 4.192 18 C -0.083 4.083 19 C -0.083 4.083 20 C -0.103 4.103 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.119 4.119 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.028 0.972 33 H 0.262 0.738 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 -10.184 10.949 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.038 4.038 4 C -0.010 4.010 5 N -0.324 5.324 6 C 0.127 3.873 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.334 3.666 16 O -0.418 6.418 17 C -0.213 4.213 18 C -0.103 4.103 19 C -0.101 4.101 20 C -0.141 4.141 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.157 4.157 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.556 -10.462 10.220 16.028 hybrid contribution 0.558 0.770 0.153 0.963 sum -5.999 -9.692 10.373 15.411 Atomic orbital electron populations 1.22669 0.81957 1.02215 0.99517 1.87958 1.18900 1.27853 1.95307 1.23162 0.95451 0.84881 1.00280 1.21507 0.90970 1.00311 0.88164 1.48041 1.64781 1.06084 1.13474 1.19233 0.95603 0.89109 0.83339 1.21494 0.94902 1.30653 1.09075 0.92412 1.24931 0.98008 0.95998 0.95177 1.69943 1.35540 1.35846 1.12161 0.86472 0.85133 0.77903 0.78097 1.19796 1.20910 1.21041 1.18389 0.77686 0.82207 0.88301 1.90650 1.47002 1.72396 1.31703 1.22885 1.04722 0.94971 0.98713 1.23525 0.94220 0.94845 0.97724 1.21369 0.95332 0.98999 0.94398 1.22214 0.97220 0.95509 0.99142 1.22518 0.99078 0.97900 0.96872 1.22355 1.00072 0.97027 0.96608 1.22253 0.99486 0.94633 0.99292 0.94339 0.90120 0.94601 0.93028 0.92722 0.90667 0.88595 0.93855 0.95449 0.92853 0.85762 0.87047 0.86631 0.92668 0.90758 0.91539 0.92224 0.92296 0.92155 0.91964 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.66 8.26 -35.23 -0.29 -5.95 16 3 C 0.04 0.58 6.28 37.16 0.23 0.81 16 4 C 0.12 1.91 5.70 -4.04 -0.02 1.88 16 5 N -0.59 -12.87 2.44 -176.46 -0.43 -13.30 16 6 C 0.25 6.49 5.16 -5.20 -0.03 6.46 16 7 C -0.52 -14.83 9.39 -34.44 -0.32 -15.15 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 11 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.54 11.85 7.09 -12.67 -0.09 11.76 16 16 O -0.54 -13.47 12.43 5.26 0.07 -13.40 16 17 C -0.19 -3.30 8.03 -37.80 -0.30 -3.60 16 18 C -0.08 -1.28 8.44 -36.13 -0.30 -1.59 16 19 C -0.08 -1.35 2.33 -90.66 -0.21 -1.56 16 20 C -0.10 -1.59 6.16 -25.07 -0.15 -1.75 16 21 C -0.13 -1.64 6.91 -24.74 -0.17 -1.81 16 22 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 23 C -0.12 -1.59 6.45 -25.61 -0.17 -1.76 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.10 6.19 -51.93 -0.32 0.78 16 30 H 0.10 1.56 8.07 -51.93 -0.42 1.14 16 31 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 32 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.12 1.89 5.45 -52.49 -0.29 1.60 16 35 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.12 2.37 5.36 -51.93 -0.28 2.09 16 37 H 0.05 0.78 7.85 -51.93 -0.41 0.38 16 38 H 0.07 1.33 7.67 -51.93 -0.40 0.93 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.71 7.67 -51.93 -0.40 0.32 16 LS Contribution 351.85 15.07 5.30 5.30 Total: -1.00 -32.31 351.85 -7.84 -40.15 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.51 Total: 1.03 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.70 Total: -4.79 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.31 Total: -39.28 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.23 Total: -19.35 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.31 -7.84 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843788451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.502 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds