Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47403 * 2 1 4 4 C 1.34229 * 117.00370 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99421 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00033 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47361 * 60.00267 * 6 4 3 8 8 C 1.53003 * 109.47177 * 300.00099 * 6 4 3 9 9 C 1.53001 * 109.47020 * 297.74056 * 8 6 4 10 10 C 1.52992 * 117.49968 * 242.63862 * 9 8 6 11 11 C 1.52993 * 60.00408 * 252.51587 * 10 9 8 12 12 N 1.46904 * 109.46932 * 180.02562 * 6 4 3 13 13 C 1.46900 * 110.99726 * 202.42014 * 12 6 4 14 14 C 1.52997 * 109.47054 * 175.81406 * 13 12 6 15 15 C 1.50703 * 115.55190 * 39.28216 * 14 13 12 16 16 H 1.07999 * 119.99636 * 268.91626 * 15 14 13 17 17 C 1.37872 * 120.00441 * 88.90886 * 15 14 13 18 18 N 1.31513 * 119.99707 * 3.05297 * 17 15 14 19 19 Si 1.86797 * 120.00225 * 183.05770 * 17 15 14 20 20 H 1.48496 * 109.47315 * 59.99928 * 19 17 15 21 21 H 1.48503 * 109.47239 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46652 * 299.99998 * 19 17 15 23 23 C 1.52998 * 117.50291 * 253.56861 * 14 13 12 24 24 C 1.52995 * 60.00214 * 252.51053 * 23 14 13 25 25 H 1.08995 * 109.47350 * 59.99466 * 1 2 3 26 26 H 1.08994 * 109.47332 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46659 * 299.99749 * 1 2 3 28 28 H 1.09000 * 109.47345 * 240.00368 * 2 1 3 29 29 H 1.08998 * 109.47333 * 120.00000 * 2 1 3 30 30 H 1.09002 * 109.47099 * 177.73950 * 8 6 4 31 31 H 1.08996 * 109.47092 * 57.74298 * 8 6 4 32 32 H 1.08998 * 115.55388 * 28.35274 * 9 8 6 33 33 H 1.09007 * 117.50040 * 0.02562 * 10 9 8 34 34 H 1.09001 * 117.50182 * 145.02099 * 10 9 8 35 35 H 1.09004 * 117.49918 * 252.51439 * 11 10 9 36 36 H 1.08997 * 117.52355 * 107.48079 * 11 10 9 37 37 H 1.00904 * 110.99728 * 326.36778 * 12 6 4 38 38 H 1.08998 * 109.46871 * 295.81654 * 13 12 6 39 39 H 1.09002 * 109.47647 * 55.81207 * 13 12 6 40 40 H 0.97007 * 119.99968 * 179.97438 * 18 17 15 41 41 H 1.09001 * 117.49532 * 0.02562 * 23 14 13 42 42 H 1.08999 * 117.50241 * 145.01345 * 23 14 13 43 43 H 1.09003 * 117.49874 * 252.50616 * 24 23 14 44 44 H 1.09010 * 117.51796 * 107.47865 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5845 3.4693 0.8912 8 6 3.4496 3.6847 -1.2480 9 6 3.9692 2.9693 -2.4967 10 6 4.9282 3.7409 -3.4054 11 6 3.4891 3.4822 -3.8559 12 7 5.3877 2.8605 0.0010 13 6 5.9798 4.0987 0.5247 14 6 7.4995 3.9423 0.6068 15 6 8.1395 3.2005 -0.5383 16 1 8.2768 2.1309 -0.4792 17 6 8.5496 3.8871 -1.6613 18 7 8.4374 5.1966 -1.7088 19 14 9.2645 2.9575 -3.1153 20 1 8.2579 1.9952 -3.6309 21 1 9.6260 3.9187 -4.1880 22 1 10.4784 2.2198 -2.6826 23 6 8.1179 3.7683 1.9954 24 6 8.2944 5.0865 1.2393 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8334 4.7048 -1.2276 31 1 2.3601 3.7069 -1.2689 32 1 4.1289 1.8962 -2.3915 33 1 5.1893 4.7582 -3.1134 34 1 5.7192 3.1755 -3.8981 35 1 3.3333 2.7465 -4.6450 36 1 2.8028 4.3289 -3.8605 37 1 5.7078 2.0580 0.5224 38 1 5.7352 4.9276 -0.1396 39 1 5.5810 4.3001 1.5189 40 1 8.7263 5.6798 -2.4988 41 1 7.4418 3.7647 2.8505 42 1 8.9875 3.1167 2.0811 43 1 9.2802 5.3024 0.8275 44 1 7.7345 5.9510 1.5966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879981011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = -38.285409 kcal Electronic energy + Delta-G solvation = -23316.446729 eV Core-core repulsion = 20042.545250 eV Total energy + Delta-G solvation = -3273.901479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44820 -37.69443 -36.62297 -36.39483 -34.32175 -31.84095 -31.69492 -29.69561 -25.83151 -25.13360 -23.90837 -22.45265 -21.75858 -21.07150 -20.90875 -19.48752 -19.00390 -17.32508 -16.61935 -16.55503 -15.61962 -15.14390 -14.99966 -14.45307 -14.03540 -13.78173 -13.63179 -13.29003 -13.00589 -12.91672 -12.45722 -12.19443 -12.07847 -11.84019 -11.72478 -11.56497 -11.28398 -11.00057 -10.85495 -10.71523 -10.57292 -10.50965 -10.38790 -10.10325 -9.98669 -9.68854 -9.34197 -9.27576 -8.85883 -8.21705 -7.95958 -7.54708 -5.83973 -3.85150 2.42662 2.73974 3.42983 3.46295 3.52342 4.36277 4.57171 4.76424 4.80934 4.82819 4.91905 5.07134 5.16569 5.30228 5.39412 5.49080 5.52771 5.55355 5.57366 5.64197 5.73458 5.81567 6.01635 6.07964 6.17210 6.22797 6.25119 6.30940 6.51511 6.52532 6.59602 6.66289 6.69618 6.80297 6.87487 6.97340 7.19783 7.43019 7.60529 7.89548 8.00889 8.06665 8.21787 8.62241 9.11048 9.77852 11.25196 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.005885 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.276849 B = 4756.882670 C = 5522.712552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.465 3.535 5 O -0.495 6.495 6 C 0.099 3.901 7 H 0.068 0.932 8 C -0.070 4.070 9 C -0.124 4.124 10 C -0.146 4.146 11 C -0.203 4.203 12 N -0.636 5.636 13 C 0.110 3.890 14 C 0.042 3.958 15 C -0.461 4.461 16 H 0.055 0.945 17 C 0.079 3.921 18 N -0.884 5.884 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.222 4.222 24 C -0.145 4.145 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.348 0.652 38 H 0.070 0.930 39 H -0.003 1.003 40 H 0.255 0.745 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.733 -4.116 2.019 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.381 6.381 6 C -0.013 4.013 7 H 0.086 0.914 8 C -0.108 4.108 9 C -0.142 4.142 10 C -0.183 4.183 11 C -0.240 4.240 12 N -0.271 5.271 13 C -0.019 4.019 14 C 0.042 3.958 15 C -0.499 4.499 16 H 0.073 0.927 17 C -0.123 4.123 18 N -0.523 5.523 19 Si 0.710 3.290 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.208 1.208 23 C -0.259 4.259 24 C -0.183 4.183 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.170 0.830 38 H 0.088 0.912 39 H 0.015 0.985 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.443 -4.103 1.240 15.066 hybrid contribution 0.324 -0.731 0.085 0.804 sum -14.120 -4.834 1.326 14.983 Atomic orbital electron populations 1.21787 0.92853 1.02703 1.03446 1.22963 0.95142 0.80772 1.02473 1.86505 1.24940 1.31858 1.84350 1.23940 0.80297 0.93098 0.72012 1.90667 1.60150 1.42783 1.44523 1.21285 0.92168 0.88238 0.99592 0.91432 1.21143 0.99151 0.99163 0.91298 1.21867 1.03739 0.99072 0.89555 1.22791 0.91332 1.01795 1.02353 1.23020 0.99304 1.03287 0.98357 1.60401 0.99535 1.06459 1.60677 1.21596 0.95593 0.90813 0.93869 1.18862 0.88866 0.98039 0.90052 1.20085 1.37691 0.93019 0.99071 0.92695 1.24763 0.95337 0.94542 0.97644 1.69993 1.47859 1.05934 1.28468 0.86854 0.79398 0.79805 0.82965 1.20116 1.21698 1.20831 1.23129 1.03586 1.02638 0.96542 1.22422 1.02566 0.90000 1.03298 0.91450 0.90493 0.91611 0.91321 0.91503 0.90254 0.91217 0.88704 0.88498 0.89516 0.89874 0.89541 0.83048 0.91196 0.98516 0.93509 0.92325 0.90597 0.89532 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.36 -5.02 10.08 -39.25 -0.40 -5.42 16 4 C 0.46 7.63 6.08 36.00 0.22 7.84 16 5 O -0.50 -9.48 15.45 -18.75 -0.29 -9.77 16 6 C 0.10 1.62 2.82 -68.86 -0.19 1.42 16 7 H 0.07 1.00 7.78 -51.93 -0.40 0.60 16 8 C -0.07 -1.08 5.25 -26.73 -0.14 -1.22 16 9 C -0.12 -2.12 5.06 -90.62 -0.46 -2.58 16 10 C -0.15 -2.70 10.18 -26.74 -0.27 -2.97 16 11 C -0.20 -3.05 10.25 -26.73 -0.27 -3.33 16 12 N -0.64 -12.68 5.01 -107.95 -0.54 -13.22 16 13 C 0.11 2.32 5.60 -3.83 -0.02 2.30 16 14 C 0.04 1.01 1.80 -155.66 -0.28 0.73 16 15 C -0.46 -12.30 8.17 -34.44 -0.28 -12.58 16 16 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 17 C 0.08 2.13 5.42 -17.82 -0.10 2.03 16 18 N -0.88 -24.42 12.40 55.43 0.69 -23.73 16 19 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.22 -4.84 9.88 -26.73 -0.26 -5.10 16 24 C -0.14 -3.38 9.01 -26.73 -0.24 -3.62 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 29 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.08 1.27 7.17 -51.93 -0.37 0.90 16 31 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 32 H 0.09 1.80 7.21 -51.93 -0.37 1.42 16 33 H 0.10 1.90 8.03 -51.92 -0.42 1.49 16 34 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.35 7.32 7.49 -39.29 -0.29 7.03 16 38 H 0.07 1.58 7.43 -51.93 -0.39 1.19 16 39 H 0.00 -0.06 7.76 -51.93 -0.40 -0.46 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.06 1.15 8.08 -51.93 -0.42 0.74 16 42 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 43 H 0.09 2.20 8.01 -51.93 -0.42 1.78 16 44 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -28.57 364.33 -9.44 -38.01 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.68 Total: 9.00 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.69 Total: -16.97 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.15 Total: -36.95 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.69 Total: -15.19 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.57 -9.44 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879981011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.276 kcal (2) G-P(sol) polarization free energy of solvation -28.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds