Wall clock time and date at job start Tue Mar 31 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00044 * 2 1 4 4 O 1.20832 * 119.99668 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00228 * 180.02562 * 3 2 1 6 6 C 1.56246 * 112.55230 * 298.44411 * 5 3 2 7 7 C 1.54845 * 104.67195 * 214.63228 * 6 5 3 8 8 C 1.54845 * 102.73610 * 37.91274 * 7 6 5 9 9 C 1.54160 * 104.32863 * 321.82572 * 8 7 6 10 10 H 1.08999 * 111.79528 * 147.06528 * 9 8 7 11 11 C 1.54319 * 108.86739 * 271.10301 * 9 8 7 12 12 N 1.48529 * 104.67004 * 90.54167 * 11 9 8 13 13 C 1.46901 * 110.99794 * 159.19265 * 12 11 9 14 14 H 1.08994 * 109.47368 * 302.88982 * 13 12 11 15 15 C 1.53002 * 109.47021 * 182.88882 * 13 12 11 16 16 C 1.53005 * 109.47014 * 62.89413 * 13 12 11 17 17 C 1.50686 * 109.47170 * 185.61160 * 16 13 12 18 18 H 1.08000 * 120.00432 * 355.81909 * 17 16 13 19 19 C 1.37882 * 120.00276 * 175.81916 * 17 16 13 20 20 N 1.31513 * 120.00389 * 180.02562 * 19 17 16 21 21 Si 1.86809 * 119.99539 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46914 * 270.00031 * 21 19 17 23 23 H 1.48500 * 109.46684 * 149.99991 * 21 19 17 24 24 H 1.48497 * 109.47031 * 30.00422 * 21 19 17 25 25 C 1.48532 * 104.21118 * 39.64752 * 12 11 9 26 26 H 1.09006 * 109.47314 * 300.00271 * 1 2 3 27 27 H 1.09003 * 109.47561 * 59.99767 * 1 2 3 28 28 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.08997 * 110.52643 * 95.69349 * 6 5 3 30 30 H 1.09000 * 110.17886 * 333.39127 * 6 5 3 31 31 H 1.09001 * 110.75937 * 279.60454 * 7 6 5 32 32 H 1.08994 * 110.76477 * 156.22855 * 7 6 5 33 33 H 1.08998 * 110.46171 * 203.11066 * 8 7 6 34 34 H 1.09007 * 110.45618 * 80.53738 * 8 7 6 35 35 H 1.08998 * 110.39743 * 331.74673 * 11 9 8 36 36 H 1.09001 * 110.39448 * 209.34293 * 11 9 8 37 37 H 1.09003 * 109.47030 * 300.00371 * 15 13 12 38 38 H 1.09004 * 109.46978 * 60.00367 * 15 13 12 39 39 H 1.08999 * 109.47035 * 180.02562 * 15 13 12 40 40 H 1.08999 * 109.46950 * 65.60653 * 16 13 12 41 41 H 1.08999 * 109.46607 * 305.61099 * 16 13 12 42 42 H 0.97002 * 119.99760 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.39667 * 79.15888 * 25 12 11 44 44 H 1.09000 * 110.39726 * 201.56335 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.2012 0.6197 1.2678 7 6 5.4463 1.4872 1.5758 8 6 4.9548 2.9184 1.2477 9 6 4.0678 2.7405 -0.0005 10 1 3.2426 3.4524 -0.0155 11 6 4.9504 2.8588 -1.2609 12 7 5.3920 1.4690 -1.5426 13 6 5.8145 1.3244 -2.9421 14 1 4.9962 1.6154 -3.6006 15 6 6.1930 -0.1332 -3.2126 16 6 7.0249 2.2227 -3.2049 17 6 7.3732 2.1804 -4.6703 18 1 6.8332 1.5222 -5.3350 19 6 8.3813 2.9818 -5.1629 20 7 8.6849 2.9452 -6.4419 21 14 9.3148 4.1207 -4.0134 22 1 8.6318 5.4383 -3.9599 23 1 10.7010 4.3016 -4.5142 24 1 9.3535 3.5275 -2.6527 25 6 4.1917 0.6407 -1.2608 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.4955 -0.4090 1.0599 30 1 3.4982 0.6532 2.1002 31 1 6.2804 1.2081 0.9320 32 1 5.7239 1.4054 2.6266 33 1 5.7999 3.5698 1.0250 34 1 4.3709 3.3200 2.0760 35 1 5.8108 3.4981 -1.0634 36 1 4.3693 3.2496 -2.0962 37 1 7.0114 -0.4243 -2.5540 38 1 5.3308 -0.7732 -3.0254 39 1 6.5069 -0.2404 -4.2509 40 1 7.8735 1.8694 -2.6193 41 1 6.7864 3.2468 -2.9176 42 1 9.3939 3.5094 -6.7884 43 1 3.4932 0.6875 -2.0962 44 1 4.4804 -0.3916 -1.0632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880328753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:55 Heat of formation + Delta-G solvation = -90.047529 kcal Electronic energy + Delta-G solvation = -23549.818686 eV Core-core repulsion = 20273.672634 eV Total energy + Delta-G solvation = -3276.146053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19655 -39.40308 -36.63874 -36.03115 -33.01569 -31.46929 -31.03745 -28.85360 -27.60577 -27.35966 -25.39554 -23.68095 -22.21680 -21.81274 -20.48044 -19.26981 -18.97816 -17.53807 -17.05398 -16.69648 -16.42674 -15.64696 -14.78383 -14.50766 -14.22640 -13.80029 -13.61295 -13.54144 -13.40304 -13.04831 -12.77619 -12.47882 -12.28064 -12.02957 -11.72221 -11.66767 -11.16878 -11.07967 -11.02013 -10.97973 -10.92621 -10.88288 -10.72203 -10.60843 -10.41245 -10.24744 -9.94254 -9.81491 -9.54686 -9.15275 -8.52172 -8.02843 -6.03615 -4.01273 2.05881 2.54675 3.31833 3.39753 3.44788 4.16155 4.33700 4.43821 4.46611 4.62870 4.86247 4.89852 4.96689 5.18678 5.26843 5.28632 5.30755 5.32589 5.36577 5.60322 5.66334 5.73941 5.82338 5.83871 5.90464 5.97916 6.02711 6.08696 6.13929 6.20771 6.23871 6.26630 6.30314 6.48372 6.57685 6.73356 7.00604 7.10022 7.20476 7.42789 7.59560 7.63253 7.85580 8.53917 9.00661 9.59021 11.09578 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.004730 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.483843 B = 5918.286182 C = 6387.650929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.482 3.518 4 O -0.506 6.506 5 C -0.065 4.065 6 C -0.093 4.093 7 C -0.118 4.118 8 C -0.112 4.112 9 C -0.085 4.085 10 H 0.096 0.904 11 C 0.039 3.961 12 N -0.499 5.499 13 C 0.082 3.918 14 H 0.036 0.964 15 C -0.131 4.131 16 C 0.000 4.000 17 C -0.517 4.517 18 H 0.073 0.927 19 C 0.068 3.932 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.263 1.263 25 C 0.055 3.945 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.023 0.977 41 H 0.012 0.988 42 H 0.263 0.737 43 H 0.041 0.959 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 -5.555 16.907 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.270 6.270 3 C 0.325 3.675 4 O -0.393 6.393 5 C -0.066 4.066 6 C -0.131 4.131 7 C -0.156 4.156 8 C -0.149 4.149 9 C -0.104 4.104 10 H 0.115 0.885 11 C -0.089 4.089 12 N -0.224 5.224 13 C -0.025 4.025 14 H 0.054 0.946 15 C -0.188 4.188 16 C -0.038 4.038 17 C -0.556 4.556 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.705 3.295 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.188 1.188 25 C -0.074 4.074 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.042 0.958 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.085 -5.352 17.074 21.592 hybrid contribution -0.521 0.991 -0.229 1.143 sum -12.607 -4.361 16.845 21.487 Atomic orbital electron populations 1.23273 0.76624 1.03653 1.02474 1.86540 1.23149 1.33388 1.83934 1.23434 0.91384 0.81204 0.71508 1.90637 1.66854 1.36445 1.45345 1.22177 0.85751 0.99031 0.99678 1.22627 0.96949 0.99632 0.93882 1.22445 0.97933 0.94251 1.00934 1.22352 0.98690 0.97725 0.96128 1.22566 0.98017 0.93392 0.96446 0.88534 1.23209 0.98020 0.92222 0.95434 1.65542 1.27869 1.04435 1.24543 1.21858 0.98494 0.97320 0.84828 0.94579 1.21736 0.99878 0.94372 1.02853 1.19573 0.92860 0.93830 0.97518 1.21095 1.18345 1.24189 0.91958 0.90928 1.24985 0.96739 0.96753 0.94839 1.69911 1.31231 1.40302 1.12851 0.86811 0.79245 0.81465 0.82007 1.20422 1.21479 1.18790 1.23034 0.92031 0.98846 0.93446 0.92025 0.91914 0.88070 0.90285 0.92055 0.89198 0.91802 0.90744 0.92143 0.89337 0.93701 0.92590 0.94785 0.91056 0.95838 0.97004 0.92774 0.94049 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.21 10.57 -39.26 -0.41 -4.62 16 3 C 0.48 6.59 6.70 36.00 0.24 6.83 16 4 O -0.51 -8.00 15.23 -18.75 -0.29 -8.29 16 5 C -0.06 -0.84 1.00 -152.23 -0.15 -0.99 16 6 C -0.09 -1.02 5.91 -24.02 -0.14 -1.16 16 7 C -0.12 -1.31 6.54 -24.79 -0.16 -1.47 16 8 C -0.11 -1.30 6.27 -25.15 -0.16 -1.46 16 9 C -0.09 -1.16 3.47 -88.32 -0.31 -1.47 16 10 H 0.10 1.39 6.77 -51.93 -0.35 1.04 16 11 C 0.04 0.62 4.90 -2.23 -0.01 0.61 16 12 N -0.50 -8.27 4.48 -222.15 -1.00 -9.26 16 13 C 0.08 1.62 1.85 -67.71 -0.13 1.50 16 14 H 0.04 0.76 7.98 -51.93 -0.41 0.35 16 15 C -0.13 -2.39 8.90 37.16 0.33 -2.06 16 16 C 0.00 0.00 3.54 -27.89 -0.10 -0.10 16 17 C -0.52 -14.43 9.04 -34.44 -0.31 -14.74 16 18 H 0.07 2.17 7.20 -52.49 -0.38 1.79 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 21 Si 0.88 21.68 27.39 -169.99 -4.66 17.02 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.26 -6.27 6.66 56.52 0.38 -5.90 16 25 C 0.05 0.78 4.44 -2.23 -0.01 0.77 16 26 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 27 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.81 7.52 -51.93 -0.39 0.42 16 30 H 0.06 0.62 7.98 -51.93 -0.41 0.21 16 31 H 0.09 1.14 7.76 -51.93 -0.40 0.74 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.88 7.44 -51.93 -0.39 0.49 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.44 6.82 -51.93 -0.35 1.09 16 36 H 0.04 0.77 7.93 -51.93 -0.41 0.36 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.53 6.98 -51.93 -0.36 0.17 16 39 H 0.07 1.44 6.91 -51.93 -0.36 1.08 16 40 H 0.02 0.57 7.49 -51.93 -0.39 0.18 16 41 H 0.01 0.28 5.94 -51.93 -0.31 -0.03 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.04 0.63 7.77 -51.93 -0.40 0.22 16 44 H 0.09 1.21 7.03 -51.93 -0.36 0.85 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -31.17 337.76 -7.81 -38.98 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.39 Total: -1.47 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 0.06 Total: -10.52 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.22 Total: -36.20 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.70 Total: -12.91 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.66 Total: 17.02 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.17 -7.81 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880328753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.066 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds