Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99662 * 2 1 4 4 O 1.20827 * 120.00245 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99502 * 179.97438 * 3 2 1 6 6 C 1.54162 * 111.79554 * 298.65241 * 5 3 2 7 7 C 1.56234 * 103.66205 * 214.47100 * 6 5 3 8 8 C 1.54852 * 103.31131 * 37.05763 * 7 6 5 9 9 C 1.54165 * 104.31980 * 322.36658 * 8 7 6 10 10 H 1.08998 * 111.79109 * 146.15638 * 9 8 7 11 11 C 1.54319 * 109.64768 * 270.75700 * 9 8 7 12 12 N 1.48527 * 104.67277 * 137.84669 * 11 9 8 13 13 C 1.46902 * 111.00124 * 200.80354 * 12 11 9 14 14 H 1.08995 * 109.46978 * 57.07353 * 13 12 11 15 15 C 1.53000 * 109.46914 * 177.07433 * 13 12 11 16 16 C 1.52993 * 109.47028 * 297.07332 * 13 12 11 17 17 C 1.50703 * 109.47298 * 174.34324 * 16 13 12 18 18 H 1.08006 * 119.99507 * 356.24610 * 17 16 13 19 19 C 1.37875 * 120.00365 * 176.25586 * 17 16 13 20 20 N 1.31514 * 119.99725 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00161 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47210 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47322 * 59.99438 * 21 19 17 24 24 H 1.48507 * 109.46978 * 299.99707 * 21 19 17 25 25 C 1.48537 * 104.21048 * 320.35294 * 12 11 9 26 26 H 1.09007 * 109.46823 * 59.99992 * 1 2 3 27 27 H 1.09003 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47715 * 300.00308 * 1 2 3 29 29 H 1.08998 * 110.46743 * 331.63187 * 6 5 3 30 30 H 1.09000 * 110.46099 * 94.21369 * 6 5 3 31 31 H 1.09005 * 110.01682 * 278.77820 * 7 6 5 32 32 H 1.09001 * 111.11632 * 155.85958 * 7 6 5 33 33 H 1.08999 * 110.45953 * 203.65362 * 8 7 6 34 34 H 1.08997 * 110.46050 * 81.07776 * 8 7 6 35 35 H 1.08996 * 110.39839 * 19.04196 * 11 9 8 36 36 H 1.09009 * 110.39480 * 256.63810 * 11 9 8 37 37 H 1.09009 * 109.46928 * 180.02562 * 15 13 12 38 38 H 1.09004 * 109.47332 * 299.99632 * 15 13 12 39 39 H 1.08995 * 109.47363 * 60.00156 * 15 13 12 40 40 H 1.09003 * 109.47281 * 54.34137 * 16 13 12 41 41 H 1.09001 * 109.47552 * 294.34036 * 16 13 12 42 42 H 0.96995 * 120.00383 * 0.02562 * 20 19 17 43 43 H 1.08994 * 110.39570 * 158.44032 * 25 12 11 44 44 H 1.08997 * 110.39666 * 280.84595 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1733 0.6196 1.2571 7 6 5.4280 1.4991 1.5623 8 6 4.9555 2.9302 1.2065 9 6 4.0679 2.7399 -0.0396 10 1 3.2427 3.4516 -0.0611 11 6 4.9352 2.8284 -1.3129 12 7 4.4335 1.7370 -2.1865 13 6 5.4362 1.3661 -3.1940 14 1 6.3610 1.0749 -2.6961 15 6 4.9136 0.1931 -4.0258 16 6 5.7048 2.5614 -4.1103 17 6 6.8309 2.2276 -5.0546 18 1 7.3475 1.2833 -4.9663 19 6 7.2016 3.1276 -6.0310 20 7 6.5722 4.2773 -6.1387 21 14 8.5979 2.7141 -7.2009 22 1 8.7980 3.8385 -8.1500 23 1 8.2608 1.4819 -7.9581 24 1 9.8447 2.4927 -6.4250 25 6 4.1760 0.6113 -1.2522 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.4761 0.6796 2.0928 30 1 4.4392 -0.4179 1.0551 31 1 6.2593 1.1972 0.9251 32 1 5.7064 1.4345 2.6142 33 1 5.8092 3.5663 0.9728 34 1 4.3758 3.3548 2.0261 35 1 5.9853 2.6677 -1.0692 36 1 4.8005 3.7954 -1.7978 37 1 5.6578 -0.0824 -4.7731 38 1 4.7222 -0.6586 -3.3730 39 1 3.9887 0.4843 -4.5237 40 1 5.9806 3.4267 -3.5075 41 1 4.8059 2.7894 -4.6832 42 1 5.8474 4.4923 -5.5310 43 1 3.4692 -0.0926 -1.6913 44 1 5.1085 0.1068 -0.9991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880328754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = -98.932893 kcal Electronic energy + Delta-G solvation = -23510.068858 eV Core-core repulsion = 20233.537507 eV Total energy + Delta-G solvation = -3276.531351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18165 -39.31041 -36.55643 -36.10987 -33.34847 -31.35013 -31.11538 -28.43895 -27.41050 -26.93691 -25.26626 -23.66863 -22.42703 -21.96646 -20.64012 -19.33117 -18.93634 -17.42512 -17.04849 -16.72448 -16.33699 -15.32868 -14.91566 -14.82157 -14.25482 -13.89086 -13.68426 -13.37923 -13.19133 -12.87267 -12.57908 -12.41546 -12.25628 -11.98223 -11.65211 -11.56602 -11.34525 -11.24040 -11.16072 -10.92838 -10.88421 -10.80210 -10.72172 -10.56820 -10.38046 -10.27058 -10.10306 -9.95738 -9.47780 -8.54458 -8.28849 -7.97852 -6.32214 -4.00949 2.21563 2.64356 3.44783 3.46729 3.65466 4.16930 4.19855 4.48795 4.56415 4.70319 4.90410 4.98076 5.05124 5.08329 5.09929 5.23181 5.29200 5.38724 5.44551 5.48929 5.53940 5.70394 5.74497 5.82912 5.85122 5.89209 5.95417 5.99540 6.01995 6.13652 6.23757 6.28691 6.34224 6.44857 6.55774 6.76861 7.01370 7.25881 7.31077 7.55088 7.71231 7.75715 8.26574 8.49325 8.91930 9.70816 11.08410 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023303 B = 0.004416 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.277595 B = 6339.009256 C = 6770.806772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.486 3.514 4 O -0.502 6.502 5 C -0.059 4.059 6 C -0.106 4.106 7 C -0.123 4.123 8 C -0.119 4.119 9 C -0.082 4.082 10 H 0.102 0.898 11 C 0.045 3.955 12 N -0.509 5.509 13 C 0.083 3.917 14 H 0.032 0.968 15 C -0.129 4.129 16 C 0.021 3.979 17 C -0.598 4.598 18 H 0.048 0.952 19 C 0.016 3.984 20 N -0.913 5.913 21 Si 1.067 2.933 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.049 3.951 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.053 0.947 40 H 0.006 0.994 41 H 0.016 0.984 42 H 0.269 0.731 43 H 0.083 0.917 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 -9.017 16.711 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.329 3.671 4 O -0.388 6.388 5 C -0.061 4.061 6 C -0.144 4.144 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.101 4.101 10 H 0.120 0.880 11 C -0.083 4.083 12 N -0.233 5.233 13 C -0.024 4.024 14 H 0.050 0.950 15 C -0.187 4.187 16 C -0.016 4.016 17 C -0.637 4.637 18 H 0.066 0.934 19 C -0.188 4.188 20 N -0.549 5.549 21 Si 0.895 3.105 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.216 1.216 25 C -0.079 4.079 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.024 0.976 41 H 0.035 0.965 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.855 -7.990 15.092 18.401 hybrid contribution -0.450 -0.843 1.644 1.901 sum -7.305 -8.833 16.736 20.285 Atomic orbital electron populations 1.23248 0.76642 1.03493 1.02503 1.86503 1.23144 1.33549 1.84214 1.23272 0.91252 0.81153 0.71445 1.90627 1.66783 1.36395 1.45044 1.21828 0.86847 0.98916 0.98486 1.22620 0.97396 0.99409 0.94950 1.22721 0.97235 0.94747 1.01355 1.22402 0.99290 0.97014 0.96939 1.22583 0.98580 0.93699 0.95266 0.87972 1.23126 0.96367 0.97320 0.91471 1.65545 1.42265 1.04818 1.10684 1.21884 0.90309 0.98085 0.92136 0.95005 1.21716 1.01735 0.95777 0.99433 1.19238 0.96848 0.91816 0.93726 1.21984 1.18719 1.05288 1.17724 0.93387 1.25783 1.01259 0.93563 0.98199 1.70762 1.22475 1.22554 1.39086 0.83573 0.75196 0.75661 0.76020 1.20809 1.21486 1.21558 1.23146 0.99691 0.94805 0.90292 0.91807 0.88218 0.92138 0.91390 0.89912 0.91131 0.90967 0.90593 0.91345 0.93399 0.89671 0.91315 0.94911 0.92804 0.97558 0.96548 0.92006 0.89826 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.60 10.39 -39.26 -0.41 -5.01 16 3 C 0.49 7.20 6.59 36.01 0.24 7.44 16 4 O -0.50 -8.65 15.23 -18.75 -0.29 -8.94 16 5 C -0.06 -0.80 0.90 -153.36 -0.14 -0.94 16 6 C -0.11 -1.12 5.77 -24.39 -0.14 -1.26 16 7 C -0.12 -1.24 6.87 -24.02 -0.17 -1.40 16 8 C -0.12 -1.34 6.16 -25.15 -0.15 -1.50 16 9 C -0.08 -1.18 3.44 -88.32 -0.30 -1.48 16 10 H 0.10 1.62 6.78 -51.93 -0.35 1.26 16 11 C 0.05 0.77 4.89 -2.23 -0.01 0.76 16 12 N -0.51 -9.44 5.20 -222.15 -1.15 -10.60 16 13 C 0.08 1.75 1.85 -67.72 -0.13 1.63 16 14 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 15 C -0.13 -2.53 8.91 37.16 0.33 -2.20 16 16 C 0.02 0.54 3.81 -27.89 -0.11 0.44 16 17 C -0.60 -16.85 8.34 -34.44 -0.29 -17.14 16 18 H 0.05 1.32 7.25 -52.48 -0.38 0.94 16 19 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 20 N -0.91 -28.19 13.65 55.43 0.76 -27.43 16 21 Si 1.07 25.35 29.90 -169.99 -5.08 20.26 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.05 0.74 4.40 -2.23 -0.01 0.73 16 26 H 0.06 0.66 8.13 -51.92 -0.42 0.23 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 29 H 0.07 0.67 7.96 -51.93 -0.41 0.25 16 30 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.84 7.78 -51.93 -0.40 0.44 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.81 7.46 -51.93 -0.39 0.42 16 36 H 0.08 1.59 7.54 -51.92 -0.39 1.20 16 37 H 0.07 1.42 7.08 -51.92 -0.37 1.05 16 38 H 0.03 0.54 6.98 -51.93 -0.36 0.18 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.01 0.17 6.72 -51.93 -0.35 -0.18 16 41 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 42 H 0.27 8.37 7.20 -40.82 -0.29 8.07 16 43 H 0.08 1.27 7.27 -51.93 -0.38 0.89 16 44 H 0.06 0.79 7.44 -51.93 -0.39 0.41 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -32.29 341.66 -8.37 -40.67 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.44 Total: -0.94 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 0.10 Total: -13.16 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.40 Total: -38.03 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.69 Total: -13.95 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.29 -8.37 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880328754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.268 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds