Wall clock time and date at job start Tue Mar 31 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47088 * 2 1 4 4 C 1.50695 * 109.46907 * 239.99567 * 2 1 3 5 5 H 1.08003 * 120.00256 * 240.00391 * 4 2 1 6 6 C 1.37877 * 119.99900 * 60.00195 * 4 2 1 7 7 N 1.31514 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00128 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47175 * 90.00010 * 8 6 4 10 10 H 1.48499 * 109.47333 * 210.00152 * 8 6 4 11 11 H 1.48504 * 109.47010 * 329.99938 * 8 6 4 12 12 C 1.50703 * 109.46976 * 119.99778 * 2 1 3 13 13 O 1.21281 * 119.99847 * 95.27332 * 12 2 1 14 14 N 1.34771 * 120.00224 * 275.27572 * 12 2 1 15 15 C 1.46927 * 120.63077 * 355.01508 * 14 12 2 16 16 C 1.53618 * 108.54616 * 126.36724 * 15 14 12 17 17 C 1.53039 * 109.24134 * 54.85641 * 16 15 14 18 18 O 1.42896 * 109.46203 * 58.53018 * 17 16 15 19 19 C 1.53007 * 109.46215 * 178.49172 * 17 16 15 20 20 C 1.53783 * 113.61218 * 44.20616 * 19 17 16 21 21 C 1.53960 * 87.01426 * 220.05000 * 20 19 17 22 22 C 1.53777 * 87.11549 * 25.36406 * 21 20 19 23 23 C 1.53046 * 109.54018 * 298.51161 * 17 16 15 24 24 C 1.46921 * 120.63135 * 175.29502 * 14 12 2 25 25 H 1.08998 * 109.47841 * 184.88776 * 1 2 3 26 26 H 1.09003 * 109.47223 * 304.88849 * 1 2 3 27 27 H 1.09000 * 109.46997 * 64.88146 * 1 2 3 28 28 H 0.97002 * 119.99834 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.58490 * 246.20486 * 15 14 12 30 30 H 1.08998 * 109.58440 * 6.62663 * 15 14 12 31 31 H 1.09005 * 109.63562 * 294.86551 * 16 15 14 32 32 H 1.08997 * 109.46163 * 174.74129 * 16 15 14 33 33 H 0.96701 * 114.00526 * 299.93899 * 18 17 16 34 34 H 1.08996 * 112.84924 * 175.40069 * 19 17 16 35 35 H 1.09001 * 113.61304 * 334.56875 * 20 19 17 36 36 H 1.08990 * 113.61403 * 105.47213 * 20 19 17 37 37 H 1.08997 * 113.53425 * 270.80921 * 21 20 19 38 38 H 1.09002 * 113.66343 * 139.93787 * 21 20 19 39 39 H 1.08998 * 113.61582 * 220.09572 * 22 21 20 40 40 H 1.09000 * 113.61774 * 89.18373 * 22 21 20 41 41 H 1.08999 * 109.49502 * 301.41850 * 23 17 16 42 42 H 1.08994 * 109.52254 * 181.32963 * 23 17 16 43 43 H 1.09002 * 109.58824 * 353.37203 * 24 14 12 44 44 H 1.08997 * 109.59254 * 113.80135 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 1.3446 -2.1618 -4.4123 10 1 2.4871 -0.1405 -5.1120 11 1 3.6307 -1.7568 -3.7119 12 6 2.0323 -0.7104 1.2305 13 8 2.3254 -1.8859 1.1749 14 7 2.1557 -0.0394 2.3928 15 6 1.9093 1.4078 2.4515 16 6 0.8744 1.6829 3.5529 17 6 1.3650 1.0754 4.8691 18 8 2.6321 1.6405 5.2112 19 6 0.3556 1.3790 5.9782 20 6 -1.1073 1.1639 5.5555 21 6 -1.4395 2.4422 6.3467 22 6 0.0178 2.8733 6.1116 23 6 1.5085 -0.4401 4.7112 24 6 2.5452 -0.7402 3.6240 25 1 -0.3635 -1.0239 0.0876 26 1 -0.3634 0.5878 0.8430 27 1 -0.3633 0.4362 -0.9305 28 1 0.7095 1.1617 -3.4844 29 1 2.8392 1.9278 2.6819 30 1 1.5239 1.7521 1.4918 31 1 -0.0804 1.2343 3.2787 32 1 0.7494 2.7590 3.6732 33 1 3.3225 1.4864 4.5519 34 1 0.6110 0.9029 6.9249 35 1 -1.2702 1.2601 4.4821 36 1 -1.5544 0.2621 5.9734 37 1 -1.6762 2.2565 7.3943 38 1 -2.1697 3.0843 5.8541 39 1 0.4776 3.3492 6.9777 40 1 0.1630 3.4376 5.1904 41 1 0.5478 -0.8687 4.4260 42 1 1.8353 -0.8753 5.6556 43 1 2.5796 -1.8137 3.4382 44 1 3.5259 -0.3919 3.9482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884974712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:54 Heat of formation + Delta-G solvation = -70.209987 kcal Electronic energy + Delta-G solvation = -23699.403734 eV Core-core repulsion = 20424.117902 eV Total energy + Delta-G solvation = -3275.285832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67451 -38.84863 -37.03244 -34.73176 -33.86320 -31.62872 -30.93902 -30.07747 -26.81167 -25.74098 -25.20271 -23.71043 -23.26619 -21.96411 -20.45729 -18.99493 -18.21012 -16.96968 -16.43888 -16.09432 -15.74691 -15.32219 -15.16822 -14.60926 -14.50758 -14.26886 -13.85420 -13.03471 -12.94403 -12.73823 -12.58503 -12.27077 -12.02432 -11.95589 -11.66487 -11.56898 -11.39915 -11.14622 -11.09360 -10.94467 -10.66333 -10.62895 -10.59794 -10.41720 -10.31985 -10.03164 -9.98102 -9.64176 -9.00256 -8.61548 -8.30801 -8.11303 -6.06073 -4.09676 3.32069 3.37846 3.43188 3.59119 3.65999 4.01529 4.44215 4.44956 4.53420 4.70072 4.81726 4.89967 4.97929 5.05872 5.16619 5.26730 5.31455 5.39243 5.57058 5.61218 5.64176 5.72537 5.79489 5.80686 5.88344 5.94824 5.97535 6.03750 6.07788 6.16041 6.22381 6.33056 6.44820 6.61869 6.82981 6.94492 7.06798 7.39498 7.64270 7.74092 7.93999 8.07836 8.35044 8.96428 9.18010 9.55480 11.00984 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.004436 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.588119 B = 6310.198052 C = 6729.863676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.031 3.969 3 H 0.048 0.952 4 C -0.500 4.500 5 H 0.069 0.931 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.524 3.476 13 O -0.546 6.546 14 N -0.628 5.628 15 C 0.103 3.897 16 C -0.163 4.163 17 C 0.146 3.854 18 O -0.559 6.559 19 C -0.094 4.094 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.156 4.156 24 C 0.106 3.894 25 H 0.030 0.970 26 H 0.012 0.988 27 H 0.096 0.904 28 H 0.261 0.739 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.374 0.626 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 5.144 16.683 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.010 3.990 3 H 0.066 0.934 4 C -0.538 4.538 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.316 3.684 13 O -0.422 6.422 14 N -0.365 5.365 15 C -0.020 4.020 16 C -0.201 4.201 17 C 0.106 3.894 18 O -0.367 6.367 19 C -0.112 4.112 20 C -0.176 4.176 21 C -0.182 4.182 22 C -0.167 4.167 23 C -0.194 4.194 24 C -0.017 4.017 25 H 0.049 0.951 26 H 0.031 0.969 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.222 0.778 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.868 4.786 17.009 17.901 hybrid contribution 0.576 -0.591 -1.224 1.476 sum -2.292 4.194 15.786 16.493 Atomic orbital electron populations 1.21703 0.96182 0.99169 1.01745 1.18891 0.94251 0.96601 0.89221 0.93445 1.21093 1.31124 1.12507 0.89124 0.91293 1.24928 0.95093 0.95032 0.99059 1.69856 1.37036 1.22978 1.23591 0.86459 0.79453 0.79284 0.82065 1.20605 1.21245 1.19797 1.22044 0.74844 0.87327 0.84157 1.90523 1.49666 1.17347 1.84692 1.48409 1.71100 1.08346 1.08609 1.21849 0.97963 0.81309 1.00927 1.22827 1.00354 1.01939 0.95007 1.21018 0.83856 0.91312 0.93251 1.86474 1.20330 1.79593 1.50252 1.22464 0.93268 0.97552 0.97940 1.23135 0.94933 0.98180 1.01323 1.22857 0.97274 0.97782 1.00255 1.22902 0.95580 0.95991 1.02264 1.22539 1.01025 0.96608 0.99261 1.21420 0.96192 0.99671 0.84457 0.95114 0.96859 0.88582 0.92899 0.92170 0.87720 0.90021 0.90052 0.77757 0.89138 0.89099 0.91493 0.90500 0.91418 0.91717 0.89580 0.90659 0.90680 0.89031 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.93 37.16 0.33 -2.69 16 2 C 0.03 0.77 1.81 -92.92 -0.17 0.60 16 3 H 0.05 1.17 6.27 -51.93 -0.33 0.85 16 4 C -0.50 -14.09 8.33 -34.44 -0.29 -14.37 16 5 H 0.07 2.06 7.02 -52.48 -0.37 1.69 16 6 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 7 N -0.90 -24.73 11.29 55.43 0.63 -24.11 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.52 11.97 6.80 -10.99 -0.07 11.89 16 13 O -0.55 -14.29 15.24 5.56 0.08 -14.20 16 14 N -0.63 -10.95 2.97 -172.51 -0.51 -11.46 16 15 C 0.10 1.49 5.87 -3.49 -0.02 1.47 16 16 C -0.16 -1.99 4.30 -26.39 -0.11 -2.10 16 17 C 0.15 1.69 0.69 -90.57 -0.06 1.63 16 18 O -0.56 -6.72 12.80 -35.23 -0.45 -7.17 16 19 C -0.09 -0.97 3.28 -89.80 -0.29 -1.27 16 20 C -0.14 -1.33 7.21 -25.82 -0.19 -1.52 16 21 C -0.14 -1.25 8.09 -25.83 -0.21 -1.46 16 22 C -0.13 -1.26 7.37 -25.92 -0.19 -1.45 16 23 C -0.16 -1.93 5.04 -26.61 -0.13 -2.06 16 24 C 0.11 1.57 5.99 -3.71 -0.02 1.54 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.01 0.25 7.88 -51.93 -0.41 -0.16 16 27 H 0.10 2.44 5.96 -51.93 -0.31 2.13 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.06 0.77 7.02 -51.93 -0.36 0.40 16 30 H 0.10 1.71 5.16 -51.93 -0.27 1.44 16 31 H 0.08 1.05 6.12 -51.93 -0.32 0.74 16 32 H 0.08 0.90 6.13 -51.93 -0.32 0.58 16 33 H 0.37 4.01 5.83 45.56 0.27 4.27 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.94 5.66 -51.93 -0.29 0.65 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.85 6.00 -51.93 -0.31 0.54 16 41 H 0.07 0.99 8.02 -51.93 -0.42 0.58 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.54 7.03 -51.93 -0.37 1.18 16 44 H 0.06 0.74 7.02 -51.93 -0.36 0.38 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -30.60 328.61 -8.11 -38.71 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.26 Total: 4.90 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.53 Total: -8.24 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.11 Total: -35.57 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.37 Total: -21.37 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.60 -8.11 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884974712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.497 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds