Wall clock time and date at job start Tue Mar 31 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46815 * 2 1 4 4 C 1.50706 * 109.47060 * 119.99465 * 2 1 3 5 5 H 1.08002 * 119.99480 * 120.00083 * 4 2 1 6 6 C 1.37871 * 120.00034 * 300.27576 * 4 2 1 7 7 N 1.31517 * 120.00031 * 359.72633 * 6 4 2 8 8 Si 1.86801 * 119.99659 * 179.72164 * 6 4 2 9 9 H 1.48500 * 109.46946 * 90.00713 * 8 6 4 10 10 H 1.48503 * 109.46957 * 210.00173 * 8 6 4 11 11 H 1.48497 * 109.47619 * 330.00137 * 8 6 4 12 12 C 1.50701 * 109.47336 * 239.99687 * 2 1 3 13 13 O 1.21280 * 119.99729 * 334.96024 * 12 2 1 14 14 N 1.34774 * 119.99819 * 154.95380 * 12 2 1 15 15 C 1.46922 * 120.63246 * 4.90460 * 14 12 2 16 16 C 1.53632 * 108.54163 * 126.36695 * 15 14 12 17 17 C 1.53031 * 109.24413 * 54.85605 * 16 15 14 18 18 O 1.42904 * 109.46139 * 58.52840 * 17 16 15 19 19 C 1.52997 * 109.46372 * 178.48766 * 17 16 15 20 20 C 1.53789 * 113.60907 * 44.20730 * 19 17 16 21 21 C 1.53955 * 87.01611 * 220.04821 * 20 19 17 22 22 C 1.53775 * 113.61548 * 306.60188 * 19 17 16 23 23 C 1.53041 * 109.54080 * 298.51370 * 17 16 15 24 24 C 1.46924 * 120.62910 * 185.17898 * 14 12 2 25 25 H 1.09004 * 109.46899 * 55.10746 * 1 2 3 26 26 H 1.08995 * 109.47081 * 175.10607 * 1 2 3 27 27 H 1.08995 * 109.46915 * 295.10799 * 1 2 3 28 28 H 0.97006 * 119.99526 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.58680 * 246.19813 * 15 14 12 30 30 H 1.09002 * 109.58821 * 6.62495 * 15 14 12 31 31 H 1.08998 * 109.62993 * 294.86165 * 16 15 14 32 32 H 1.09000 * 109.45560 * 174.74566 * 16 15 14 33 33 H 0.96694 * 114.00376 * 299.93735 * 18 17 16 34 34 H 1.08996 * 112.85322 * 175.39693 * 19 17 16 35 35 H 1.08994 * 113.61576 * 334.56393 * 20 19 17 36 36 H 1.08995 * 113.61312 * 105.47018 * 20 19 17 37 37 H 1.09004 * 113.53694 * 270.81062 * 21 20 19 38 38 H 1.09001 * 113.66633 * 139.93411 * 21 20 19 39 39 H 1.09000 * 113.61197 * 254.52523 * 22 19 17 40 40 H 1.09004 * 113.61454 * 25.42881 * 22 19 17 41 41 H 1.09007 * 109.49087 * 301.41475 * 23 17 16 42 42 H 1.08992 * 109.52946 * 181.33103 * 23 17 16 43 43 H 1.09001 * 109.58535 * 353.37910 * 24 14 12 44 44 H 1.09001 * 109.58676 * 113.79996 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6946 -0.2425 2.4827 7 7 0.9385 0.8268 2.6033 8 14 2.3109 -1.1276 4.0079 9 1 3.6177 -0.5542 4.4188 10 1 1.3285 -0.9593 5.1088 11 1 2.4764 -2.5727 3.7089 12 6 2.0324 -0.7105 -1.2304 13 8 1.3374 -1.5399 -1.7779 14 7 3.2540 -0.4239 -1.7224 15 6 4.1499 0.4983 -1.0114 16 6 5.4983 -0.2040 -0.7901 17 6 6.0392 -0.6929 -2.1355 18 8 6.1855 0.4183 -3.0221 19 6 7.4001 -1.3599 -1.9259 20 6 7.4417 -2.3072 -0.7151 21 6 8.8475 -1.7489 -0.4284 22 6 8.4095 -0.4770 -1.1735 23 6 5.0638 -1.7041 -2.7424 24 6 3.7128 -1.0233 -2.9829 25 1 -0.3633 0.5879 -0.8430 26 1 -0.3633 -1.0239 -0.0877 27 1 -0.3633 0.4360 0.9305 28 1 0.7005 1.1557 3.4844 29 1 4.2971 1.3980 -1.6089 30 1 3.7123 0.7638 -0.0491 31 1 5.3630 -1.0542 -0.1217 32 1 6.2049 0.4980 -0.3473 33 1 5.3606 0.8898 -3.2014 34 1 7.8007 -1.8005 -2.8388 35 1 6.7099 -2.0638 0.0551 36 1 7.4370 -3.3629 -0.9863 37 1 9.6444 -2.2970 -0.9313 38 1 9.0466 -1.5877 0.6310 39 1 9.1850 -0.0573 -1.8142 40 1 7.9427 0.2678 -0.5288 41 1 4.9326 -2.5403 -2.0555 42 1 5.4605 -2.0699 -3.6894 43 1 2.9865 -1.7620 -3.3219 44 1 3.8250 -0.2451 -3.7380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884974713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:56 Heat of formation + Delta-G solvation = -73.671645 kcal Electronic energy + Delta-G solvation = -23918.716166 eV Core-core repulsion = 20643.280225 eV Total energy + Delta-G solvation = -3275.435941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56670 -38.80024 -36.97658 -34.66113 -33.91126 -31.46810 -30.82332 -30.09868 -26.76436 -25.65747 -25.24236 -23.66246 -23.13531 -21.88842 -20.28981 -18.83371 -18.07760 -17.08216 -16.42332 -16.09249 -15.71816 -15.23501 -15.20844 -14.58280 -14.39959 -14.26588 -13.69587 -13.05306 -12.90698 -12.63660 -12.39706 -12.09414 -11.94302 -11.85471 -11.65912 -11.49461 -11.38839 -11.05994 -11.02315 -10.92871 -10.78082 -10.50842 -10.44997 -10.32759 -10.27938 -10.14199 -9.83960 -9.51880 -9.08698 -8.66076 -8.38831 -8.04147 -6.15373 -4.24332 3.21485 3.29596 3.32872 3.63397 3.73144 4.10762 4.34370 4.54858 4.63038 4.79207 4.93575 5.01072 5.06481 5.15634 5.18917 5.28340 5.42430 5.50472 5.65785 5.69187 5.76929 5.81898 5.89209 5.89871 5.96090 6.06556 6.07744 6.19914 6.21936 6.31527 6.35375 6.43188 6.57734 6.78660 6.98063 7.07541 7.20878 7.53009 7.71743 7.72497 7.91392 8.12278 8.24528 8.76191 9.17116 9.41674 10.89932 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.006354 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.451650 B = 4405.528940 C = 5522.540926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.031 3.969 3 H 0.046 0.954 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.530 3.470 13 O -0.565 6.565 14 N -0.622 5.622 15 C 0.105 3.895 16 C -0.160 4.160 17 C 0.145 3.855 18 O -0.560 6.560 19 C -0.094 4.094 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.155 4.155 24 C 0.105 3.895 25 H 0.009 0.991 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.264 0.736 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.373 0.627 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.041 -0.714 -7.114 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.010 3.990 3 H 0.064 0.936 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.323 3.677 13 O -0.443 6.443 14 N -0.357 5.357 15 C -0.018 4.018 16 C -0.199 4.199 17 C 0.105 3.895 18 O -0.367 6.367 19 C -0.112 4.112 20 C -0.176 4.176 21 C -0.182 4.182 22 C -0.167 4.167 23 C -0.194 4.194 24 C -0.018 4.018 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.221 0.779 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.178 -1.235 -7.249 15.091 hybrid contribution -0.201 -0.326 0.786 0.874 sum 12.977 -1.561 -6.463 14.581 Atomic orbital electron populations 1.21632 0.96211 0.99745 1.00879 1.18914 0.94670 0.96196 0.89206 0.93609 1.20738 1.31973 1.12768 0.89221 0.92475 1.24903 0.94735 0.94908 0.98942 1.69881 1.35772 1.22658 1.23807 0.86523 0.78607 0.80200 0.82349 1.20457 1.21015 1.19813 1.22002 0.79077 0.81437 0.85199 1.90519 1.57004 1.34861 1.61898 1.48247 1.16675 1.47417 1.23365 1.21861 0.89543 0.90769 0.99648 1.22776 0.97184 1.02219 0.97680 1.21041 0.93921 0.85786 0.88776 1.86467 1.37368 1.45259 1.67616 1.22455 0.93837 0.97041 0.97877 1.23149 0.97754 0.98771 0.97974 1.22857 0.96895 0.97784 1.00655 1.22901 0.98394 0.96546 0.98873 1.22520 0.95615 0.99382 1.01864 1.21429 0.95632 0.97971 0.86786 0.97194 0.94354 0.89241 0.92625 0.92752 0.86467 0.89802 0.90195 0.77880 0.89242 0.88911 0.91556 0.90568 0.91432 0.91784 0.89511 0.90607 0.90861 0.89115 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.66 37.16 0.32 -2.86 16 2 C 0.03 0.76 1.79 -92.92 -0.17 0.60 16 3 H 0.05 1.13 6.74 -51.92 -0.35 0.78 16 4 C -0.51 -13.25 7.83 -34.44 -0.27 -13.52 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 7 N -0.88 -23.73 11.29 55.43 0.63 -23.11 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.53 12.15 6.74 -10.99 -0.07 12.08 16 13 O -0.56 -14.43 15.41 5.56 0.09 -14.35 16 14 N -0.62 -11.32 2.97 -172.50 -0.51 -11.83 16 15 C 0.10 1.67 5.73 -3.48 -0.02 1.65 16 16 C -0.16 -2.25 4.30 -26.39 -0.11 -2.36 16 17 C 0.15 1.85 0.69 -90.58 -0.06 1.79 16 18 O -0.56 -7.18 12.80 -35.23 -0.45 -7.63 16 19 C -0.09 -1.08 3.28 -89.81 -0.29 -1.38 16 20 C -0.14 -1.55 7.21 -25.82 -0.19 -1.74 16 21 C -0.14 -1.44 8.09 -25.83 -0.21 -1.64 16 22 C -0.13 -1.41 7.37 -25.92 -0.19 -1.60 16 23 C -0.16 -2.08 5.04 -26.61 -0.13 -2.22 16 24 C 0.11 1.61 6.01 -3.71 -0.02 1.59 16 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.04 0.99 7.69 -51.93 -0.40 0.59 16 27 H 0.09 2.37 5.94 -51.93 -0.31 2.06 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.05 0.74 7.02 -51.93 -0.36 0.38 16 30 H 0.12 2.19 5.27 -51.93 -0.27 1.92 16 31 H 0.08 1.29 6.12 -51.93 -0.32 0.97 16 32 H 0.08 1.03 6.13 -51.93 -0.32 0.72 16 33 H 0.37 4.23 5.83 45.56 0.27 4.50 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.14 5.66 -51.93 -0.29 0.85 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.98 6.00 -51.93 -0.31 0.67 16 41 H 0.08 1.11 8.02 -51.92 -0.42 0.69 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.56 7.00 -51.93 -0.36 1.19 16 44 H 0.06 0.75 7.02 -51.93 -0.36 0.38 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -29.06 328.85 -8.15 -37.22 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.32 Total: 7.38 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.52 Total: -7.95 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.11 Total: -34.94 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.37 Total: -21.98 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.06 -8.15 -37.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884974713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.456 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds