Wall clock time and date at job start Tue Mar 31 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46815 * 2 1 4 4 C 1.50706 * 109.47060 * 119.99465 * 2 1 3 5 5 H 1.08002 * 119.99480 * 120.00083 * 4 2 1 6 6 C 1.37871 * 120.00034 * 300.27576 * 4 2 1 7 7 N 1.31517 * 120.00031 * 359.72633 * 6 4 2 8 8 Si 1.86801 * 119.99659 * 179.72164 * 6 4 2 9 9 H 1.48500 * 109.46946 * 90.00713 * 8 6 4 10 10 H 1.48503 * 109.46957 * 210.00173 * 8 6 4 11 11 H 1.48497 * 109.47619 * 330.00137 * 8 6 4 12 12 C 1.50701 * 109.47336 * 239.99687 * 2 1 3 13 13 O 1.21280 * 119.99729 * 334.96024 * 12 2 1 14 14 N 1.34774 * 119.99819 * 154.95380 * 12 2 1 15 15 C 1.46922 * 120.63246 * 4.90460 * 14 12 2 16 16 C 1.53632 * 108.54163 * 126.36695 * 15 14 12 17 17 C 1.53031 * 109.24413 * 54.85605 * 16 15 14 18 18 O 1.42904 * 109.46139 * 58.52840 * 17 16 15 19 19 C 1.52997 * 109.46372 * 178.48766 * 17 16 15 20 20 C 1.53789 * 113.60907 * 44.20730 * 19 17 16 21 21 C 1.53955 * 87.01611 * 220.04821 * 20 19 17 22 22 C 1.53775 * 113.61548 * 306.60188 * 19 17 16 23 23 C 1.53041 * 109.54080 * 298.51370 * 17 16 15 24 24 C 1.46924 * 120.62910 * 185.17898 * 14 12 2 25 25 H 1.09004 * 109.46899 * 55.10746 * 1 2 3 26 26 H 1.08995 * 109.47081 * 175.10607 * 1 2 3 27 27 H 1.08995 * 109.46915 * 295.10799 * 1 2 3 28 28 H 0.97006 * 119.99526 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.58680 * 246.19813 * 15 14 12 30 30 H 1.09002 * 109.58821 * 6.62495 * 15 14 12 31 31 H 1.08998 * 109.62993 * 294.86165 * 16 15 14 32 32 H 1.09000 * 109.45560 * 174.74566 * 16 15 14 33 33 H 0.96694 * 114.00376 * 299.93735 * 18 17 16 34 34 H 1.08996 * 112.85322 * 175.39693 * 19 17 16 35 35 H 1.08994 * 113.61576 * 334.56393 * 20 19 17 36 36 H 1.08995 * 113.61312 * 105.47018 * 20 19 17 37 37 H 1.09004 * 113.53694 * 270.81062 * 21 20 19 38 38 H 1.09001 * 113.66633 * 139.93411 * 21 20 19 39 39 H 1.09000 * 113.61197 * 254.52523 * 22 19 17 40 40 H 1.09004 * 113.61454 * 25.42881 * 22 19 17 41 41 H 1.09007 * 109.49087 * 301.41475 * 23 17 16 42 42 H 1.08992 * 109.52946 * 181.33103 * 23 17 16 43 43 H 1.09001 * 109.58535 * 353.37910 * 24 14 12 44 44 H 1.09001 * 109.58676 * 113.79996 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6946 -0.2425 2.4827 7 7 0.9385 0.8268 2.6033 8 14 2.3109 -1.1276 4.0079 9 1 3.6177 -0.5542 4.4188 10 1 1.3285 -0.9593 5.1088 11 1 2.4764 -2.5727 3.7089 12 6 2.0324 -0.7105 -1.2304 13 8 1.3374 -1.5399 -1.7779 14 7 3.2540 -0.4239 -1.7224 15 6 4.1499 0.4983 -1.0114 16 6 5.4983 -0.2040 -0.7901 17 6 6.0392 -0.6929 -2.1355 18 8 6.1855 0.4183 -3.0221 19 6 7.4001 -1.3599 -1.9259 20 6 7.4417 -2.3072 -0.7151 21 6 8.8475 -1.7489 -0.4284 22 6 8.4095 -0.4770 -1.1735 23 6 5.0638 -1.7041 -2.7424 24 6 3.7128 -1.0233 -2.9829 25 1 -0.3633 0.5879 -0.8430 26 1 -0.3633 -1.0239 -0.0877 27 1 -0.3633 0.4360 0.9305 28 1 0.7005 1.1557 3.4844 29 1 4.2971 1.3980 -1.6089 30 1 3.7123 0.7638 -0.0491 31 1 5.3630 -1.0542 -0.1217 32 1 6.2049 0.4980 -0.3473 33 1 5.3606 0.8898 -3.2014 34 1 7.8007 -1.8005 -2.8388 35 1 6.7099 -2.0638 0.0551 36 1 7.4370 -3.3629 -0.9863 37 1 9.6444 -2.2970 -0.9313 38 1 9.0466 -1.5877 0.6310 39 1 9.1850 -0.0573 -1.8142 40 1 7.9427 0.2678 -0.5288 41 1 4.9326 -2.5403 -2.0555 42 1 5.4605 -2.0699 -3.6894 43 1 2.9865 -1.7620 -3.3219 44 1 3.8250 -0.2451 -3.7380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884974713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:56 Heat of formation + Delta-G solvation = -91.359472 kcal Electronic energy + Delta-G solvation = -23919.483168 eV Core-core repulsion = 20643.280225 eV Total energy + Delta-G solvation = -3276.202943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75627 -40.27184 -38.13864 -36.01760 -35.85883 -32.94027 -32.10737 -31.79587 -27.96536 -27.27643 -26.51556 -25.08635 -24.39445 -23.32055 -21.50323 -20.12994 -19.31146 -18.58916 -18.28851 -17.38310 -17.07752 -16.62907 -16.28417 -16.16268 -15.75747 -15.48565 -15.15243 -14.64425 -14.36322 -13.87117 -13.69198 -13.49588 -13.31331 -13.14096 -12.92500 -12.86303 -12.81665 -12.70987 -12.62549 -12.40146 -12.23791 -12.13344 -12.00943 -11.88936 -11.38186 -11.17821 -11.11374 -10.90730 -10.62909 -10.57361 -10.27296 -9.52455 -8.16727 -6.31975 1.40546 1.43669 1.52316 1.86908 2.20913 2.43677 3.11930 3.15544 3.58614 3.65596 3.80566 3.91668 3.97506 4.06706 4.14175 4.17211 4.25790 4.28214 4.39046 4.62533 4.73387 4.79038 4.82976 4.84636 4.90865 4.96939 4.98449 5.00629 5.02984 5.08059 5.10437 5.15065 5.21753 5.31239 5.39178 5.45215 5.61715 5.67484 5.80675 5.85913 6.15125 6.52361 6.70946 6.77990 7.33569 7.44244 8.88259 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.006354 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.451650 B = 4405.528940 C = 5522.540926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.030 3.970 3 H 0.043 0.957 4 C -0.519 4.519 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.953 3.047 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.526 3.474 13 O -0.600 6.600 14 N -0.613 5.613 15 C 0.102 3.898 16 C -0.154 4.154 17 C 0.153 3.847 18 O -0.560 6.560 19 C -0.094 4.094 20 C -0.144 4.144 21 C -0.136 4.136 22 C -0.130 4.130 23 C -0.148 4.148 24 C 0.102 3.898 25 H 0.022 0.978 26 H 0.020 0.980 27 H 0.074 0.926 28 H 0.267 0.733 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.379 0.621 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.310 -0.523 -7.623 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.009 3.991 3 H 0.061 0.939 4 C -0.557 4.557 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.544 5.544 8 Si 0.779 3.221 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.318 3.682 13 O -0.482 6.482 14 N -0.346 5.346 15 C -0.020 4.020 16 C -0.192 4.192 17 C 0.113 3.887 18 O -0.368 6.368 19 C -0.113 4.113 20 C -0.181 4.181 21 C -0.174 4.174 22 C -0.167 4.167 23 C -0.187 4.187 24 C -0.020 4.020 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.229 0.771 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.492 -1.018 -7.769 17.361 hybrid contribution -0.900 -0.348 0.904 1.323 sum 14.591 -1.365 -6.865 16.183 Atomic orbital electron populations 1.21506 0.97005 0.98617 1.00548 1.18828 0.94141 0.96160 0.89981 0.93880 1.20813 1.32132 1.12535 0.90266 0.93694 1.25556 0.94786 0.95491 1.01345 1.69965 1.36338 1.23546 1.24533 0.85623 0.78646 0.78792 0.79063 1.19018 1.20723 1.20267 1.21641 0.80535 0.81204 0.84847 1.90494 1.58486 1.36352 1.62838 1.48185 1.15357 1.46946 1.24069 1.21971 0.89711 0.91679 0.98634 1.22722 0.96213 1.01737 0.98514 1.20945 0.94395 0.85637 0.87742 1.86478 1.37927 1.45120 1.67319 1.22498 0.93169 0.97262 0.98351 1.23139 0.98332 0.99120 0.97531 1.22847 0.96422 0.97132 1.00960 1.22890 0.98286 0.96669 0.98836 1.22475 0.94598 0.98907 1.02676 1.21649 0.96026 0.98532 0.85781 0.95878 0.96051 0.90762 0.92389 0.89705 0.89396 0.91495 0.88813 0.77104 0.88386 0.90484 0.91076 0.89123 0.91174 0.91121 0.90119 0.92156 0.88665 0.91084 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.11 8.66 71.98 0.62 -5.48 16 2 C 0.03 1.50 1.79 -12.28 -0.02 1.48 16 3 H 0.04 2.17 6.74 -2.38 -0.02 2.15 16 4 C -0.52 -27.58 7.83 25.60 0.20 -27.38 16 5 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 6 C 0.03 1.51 5.29 84.65 0.45 1.96 16 7 N -0.91 -49.04 11.29 21.45 0.24 -48.80 16 8 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 9 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 C 0.53 24.48 6.74 87.66 0.59 25.08 16 13 O -0.60 -31.38 15.41 -3.03 -0.05 -31.42 16 14 N -0.61 -22.02 2.97 -818.07 -2.43 -24.45 16 15 C 0.10 3.17 5.73 86.51 0.50 3.66 16 16 C -0.15 -4.10 4.30 30.82 0.13 -3.97 16 17 C 0.15 3.55 0.69 -10.77 -0.01 3.55 16 18 O -0.56 -12.51 12.80 -148.98 -1.91 -14.42 16 19 C -0.09 -1.94 3.28 -10.27 -0.03 -1.98 16 20 C -0.14 -2.96 7.21 31.18 0.22 -2.74 16 21 C -0.14 -2.37 8.09 31.18 0.25 -2.12 16 22 C -0.13 -2.47 7.37 31.12 0.23 -2.24 16 23 C -0.15 -3.69 5.04 30.67 0.15 -3.54 16 24 C 0.10 2.99 6.01 86.36 0.52 3.51 16 25 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.02 1.11 7.69 -2.39 -0.02 1.09 16 27 H 0.07 4.03 5.94 -2.39 -0.01 4.01 16 28 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16 29 H 0.08 2.13 7.02 -2.39 -0.02 2.11 16 30 H 0.09 3.31 5.27 -2.39 -0.01 3.30 16 31 H 0.07 2.04 6.12 -2.39 -0.01 2.03 16 32 H 0.09 2.26 6.13 -2.39 -0.01 2.24 16 33 H 0.38 7.26 5.83 -74.06 -0.43 6.82 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.84 5.66 -2.39 -0.01 1.83 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.63 6.00 -2.38 -0.01 1.62 16 41 H 0.06 1.71 8.02 -2.38 -0.02 1.69 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.07 2.41 7.00 -2.39 -0.02 2.39 16 44 H 0.09 2.06 7.02 -2.39 -0.02 2.04 16 Total: -1.00 -62.44 328.85 2.27 -60.17 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.57 Total: 25.39 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 3.81 Total: -10.21 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -2.18 Total: -73.25 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.95 Total: -45.84 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -62.44 2.27 -60.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884974713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.187 kcal (2) G-P(sol) polarization free energy of solvation -62.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds