Wall clock time and date at job start Tue Mar 31 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 5 5 H 1.08001 * 120.00089 * 240.00065 * 4 2 1 6 6 C 1.37882 * 120.00151 * 59.99898 * 4 2 1 7 7 N 1.31511 * 119.99699 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99903 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47070 * 90.00340 * 8 6 4 10 10 H 1.48504 * 109.46932 * 210.00284 * 8 6 4 11 11 H 1.48499 * 109.47539 * 329.99770 * 8 6 4 12 12 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 13 13 O 1.21283 * 120.00472 * 119.99880 * 12 2 1 14 14 N 1.34777 * 119.99538 * 299.99218 * 12 2 1 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 2 16 16 H 1.08999 * 109.47480 * 35.27807 * 15 14 12 17 17 C 1.52999 * 109.47136 * 275.27771 * 15 14 12 18 18 C 1.53009 * 117.50162 * 128.74799 * 17 15 14 19 19 C 1.53004 * 117.50286 * 60.08977 * 17 15 14 20 20 C 1.52999 * 109.47493 * 155.28120 * 15 14 12 21 21 H 1.08995 * 109.52950 * 180.13002 * 20 15 14 22 22 C 1.53186 * 109.51559 * 300.31639 * 20 15 14 23 23 C 1.53181 * 109.03353 * 176.88212 * 22 20 15 24 24 C 1.53088 * 109.16540 * 303.02018 * 23 22 20 25 25 O 1.42898 * 109.41659 * 57.60862 * 24 23 22 26 26 C 1.42910 * 114.09679 * 298.84260 * 25 24 23 27 27 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 28 28 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 30 30 H 0.97004 * 119.99534 * 179.97438 * 7 6 4 31 31 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 32 32 H 1.08997 * 115.55354 * 274.41685 * 17 15 14 33 33 H 1.08999 * 117.49124 * 0.02562 * 18 17 15 34 34 H 1.09001 * 117.50171 * 145.01715 * 18 17 15 35 35 H 1.08993 * 117.50276 * 214.98380 * 19 17 15 36 36 H 1.09005 * 117.49316 * 359.97364 * 19 17 15 37 37 H 1.09003 * 109.54188 * 296.74787 * 22 20 15 38 38 H 1.08994 * 109.54720 * 57.02026 * 22 20 15 39 39 H 1.09002 * 109.52173 * 183.11077 * 23 22 20 40 40 H 1.09002 * 109.51818 * 62.92383 * 23 22 20 41 41 H 1.09003 * 109.47621 * 297.62401 * 24 23 22 42 42 H 1.09003 * 109.48063 * 177.59406 * 24 23 22 43 43 H 1.08999 * 109.47904 * 301.17714 * 26 25 24 44 44 H 1.08995 * 109.48999 * 181.14872 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3222 -1.1192 -4.0081 9 1 1.3445 -2.1611 -4.4126 10 1 2.4870 -0.1398 -5.1121 11 1 3.6306 -1.7563 -3.7123 12 6 2.0324 -0.7106 1.2303 13 8 2.7296 -1.6967 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 2.1902 -0.9445 3.6505 16 1 3.1900 -1.3366 3.4639 17 6 1.2443 -2.0989 3.9874 18 6 1.8649 -3.4806 4.2040 19 6 1.0612 -3.1928 2.9334 20 6 2.2376 0.0352 4.8248 21 1 2.5993 -0.4799 5.7146 22 6 3.1783 1.1956 4.4856 23 6 3.1574 2.2080 5.6349 24 6 1.7182 2.6755 5.8668 25 8 0.8907 1.5447 6.1468 26 6 0.8339 0.5867 5.0879 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.7085 1.1615 -3.4843 31 1 1.1490 0.5383 2.5436 32 1 0.3785 -1.8353 4.5948 33 1 2.9471 -3.5669 4.1069 34 1 1.4072 -4.1260 4.9536 35 1 0.0750 -3.6490 2.8476 36 1 1.6143 -3.0897 1.9998 37 1 4.1915 0.8165 4.3519 38 1 2.8445 1.6793 3.5676 39 1 3.7815 3.0639 5.3778 40 1 3.5382 1.7376 6.5415 41 1 1.3521 3.1816 4.9735 42 1 1.6913 3.3638 6.7116 43 1 0.4562 1.0655 4.1845 44 1 0.1699 -0.2298 5.3714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885490352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:33 Heat of formation + Delta-G solvation = -75.029137 kcal Electronic energy + Delta-G solvation = -23494.639990 eV Core-core repulsion = 20219.145184 eV Total energy + Delta-G solvation = -3275.494806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21802 -38.67076 -36.85801 -34.59734 -33.70942 -32.89156 -31.33551 -30.11583 -26.46576 -25.19471 -25.10744 -22.98880 -22.55753 -21.94702 -20.34796 -19.78533 -19.25327 -16.58003 -16.39172 -16.13249 -15.84467 -15.65754 -15.02396 -14.67473 -14.49295 -14.38281 -13.95210 -13.54186 -13.11844 -12.87684 -12.73029 -12.40056 -12.13725 -11.62935 -11.53980 -11.41893 -11.18735 -11.11102 -10.99357 -10.75114 -10.71475 -10.65454 -10.35623 -10.23080 -10.05126 -9.94812 -9.81273 -9.49039 -8.96593 -8.57635 -8.37056 -8.27593 -6.02618 -4.05499 3.33769 3.39620 3.46018 3.64371 3.76089 3.79713 4.29489 4.48857 4.55399 4.65590 4.75372 4.83471 5.00326 5.14360 5.17567 5.30233 5.32168 5.33815 5.37217 5.47387 5.60681 5.65894 5.71953 5.86686 5.87526 5.91674 5.94790 6.10811 6.19736 6.25021 6.30565 6.42084 6.62914 6.76153 6.85166 6.94289 7.07092 7.14816 7.48613 7.76634 8.00055 8.16539 8.46680 9.03554 9.27488 9.60205 11.04975 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.004941 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.725300 B = 5665.183114 C = 6412.791999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.049 0.951 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.524 3.476 13 O -0.543 6.543 14 N -0.738 5.738 15 C 0.182 3.818 16 H 0.086 0.914 17 C -0.172 4.172 18 C -0.176 4.176 19 C -0.177 4.177 20 C -0.123 4.123 21 H 0.089 0.911 22 C -0.119 4.119 23 C -0.154 4.154 24 C 0.058 3.942 25 O -0.383 6.383 26 C 0.063 3.937 27 H 0.092 0.908 28 H 0.031 0.969 29 H 0.010 0.990 30 H 0.260 0.740 31 H 0.392 0.608 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 1.865 16.771 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.067 0.933 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.314 3.686 13 O -0.420 6.420 14 N -0.392 5.392 15 C 0.077 3.923 16 H 0.104 0.896 17 C -0.192 4.192 18 C -0.214 4.214 19 C -0.214 4.214 20 C -0.142 4.142 21 H 0.107 0.893 22 C -0.157 4.157 23 C -0.192 4.192 24 C -0.019 4.019 25 O -0.302 6.302 26 C -0.013 4.013 27 H 0.110 0.890 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.227 0.773 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.431 1.249 16.696 16.748 hybrid contribution 0.092 -0.022 -0.994 0.999 sum 0.523 1.227 15.702 15.758 Atomic orbital electron populations 1.21727 0.96587 0.99805 1.00767 1.18859 0.94071 0.96751 0.89538 0.93282 1.21137 1.30844 1.12726 0.88978 0.90794 1.24948 0.95163 0.95057 0.99101 1.69873 1.37201 1.23120 1.23473 0.86473 0.79444 0.79249 0.82162 1.20704 1.21353 1.19782 1.21894 0.78074 0.84156 0.84449 1.90453 1.38093 1.26761 1.86673 1.46428 1.55344 1.32045 1.05401 1.20307 0.97474 0.90194 0.84352 0.89559 1.22750 1.01669 0.90282 1.04479 1.22889 0.99790 0.97910 1.00799 1.23338 1.01364 1.00994 0.95712 1.22000 0.96870 0.96537 0.98783 0.89307 1.21644 1.00031 0.95612 0.98374 1.22188 0.97692 0.99834 0.99501 1.22595 0.89791 0.88228 1.01292 1.87925 1.68142 1.32637 1.41480 1.22720 0.96167 0.91836 0.90608 0.88952 0.94975 0.97101 0.93020 0.77316 0.88215 0.89024 0.89496 0.89842 0.85619 0.91281 0.91028 0.90887 0.91242 0.93012 0.89141 0.92958 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.87 37.16 0.33 -2.63 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.50 -13.90 8.37 -34.44 -0.29 -14.19 16 5 H 0.07 2.18 6.75 -52.49 -0.35 1.82 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.02 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.52 11.31 6.48 -10.99 -0.07 11.24 16 13 O -0.54 -13.24 12.47 5.55 0.07 -13.17 16 14 N -0.74 -12.13 4.13 -53.81 -0.22 -12.36 16 15 C 0.18 2.59 2.03 -67.93 -0.14 2.45 16 16 H 0.09 1.41 7.34 -51.93 -0.38 1.03 16 17 C -0.17 -2.37 5.15 -90.61 -0.47 -2.84 16 18 C -0.18 -2.35 10.18 -26.69 -0.27 -2.63 16 19 C -0.18 -2.85 9.73 -26.69 -0.26 -3.11 16 20 C -0.12 -1.41 2.25 -90.48 -0.20 -1.61 16 21 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 22 C -0.12 -1.33 5.19 -26.54 -0.14 -1.47 16 23 C -0.15 -1.45 6.14 -26.59 -0.16 -1.61 16 24 C 0.06 0.56 6.84 37.20 0.25 0.81 16 25 O -0.38 -4.54 10.77 -35.23 -0.38 -4.92 16 26 C 0.06 0.71 5.69 37.20 0.21 0.92 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.01 0.19 7.56 -51.93 -0.39 -0.20 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 5.82 6.03 -40.82 -0.25 5.57 16 32 H 0.10 1.22 6.13 -51.93 -0.32 0.90 16 33 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.13 2.52 5.00 -51.93 -0.26 2.26 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.88 7.35 -51.93 -0.38 0.50 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 44 H 0.10 1.03 6.26 -51.93 -0.33 0.71 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -29.76 337.12 -8.48 -38.24 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.09 Total: 7.51 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -1.54 Total: -12.70 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.40 Total: -36.75 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.31 Total: -18.09 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.76 -8.48 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885490352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.786 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds