Wall clock time and date at job start Tue Mar 31 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 5 5 H 1.08001 * 120.00089 * 240.00065 * 4 2 1 6 6 C 1.37882 * 120.00151 * 59.99898 * 4 2 1 7 7 N 1.31511 * 119.99699 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99903 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47070 * 90.00340 * 8 6 4 10 10 H 1.48504 * 109.46932 * 210.00284 * 8 6 4 11 11 H 1.48499 * 109.47539 * 329.99770 * 8 6 4 12 12 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 13 13 O 1.21283 * 120.00472 * 119.99880 * 12 2 1 14 14 N 1.34777 * 119.99538 * 299.99218 * 12 2 1 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 2 16 16 H 1.08999 * 109.47480 * 35.27807 * 15 14 12 17 17 C 1.52999 * 109.47136 * 275.27771 * 15 14 12 18 18 C 1.53009 * 117.50162 * 128.74799 * 17 15 14 19 19 C 1.53004 * 117.50286 * 60.08977 * 17 15 14 20 20 C 1.52999 * 109.47493 * 155.28120 * 15 14 12 21 21 H 1.08995 * 109.52950 * 180.13002 * 20 15 14 22 22 C 1.53186 * 109.51559 * 300.31639 * 20 15 14 23 23 C 1.53181 * 109.03353 * 176.88212 * 22 20 15 24 24 C 1.53088 * 109.16540 * 303.02018 * 23 22 20 25 25 O 1.42898 * 109.41659 * 57.60862 * 24 23 22 26 26 C 1.42910 * 114.09679 * 298.84260 * 25 24 23 27 27 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 28 28 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 30 30 H 0.97004 * 119.99534 * 179.97438 * 7 6 4 31 31 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 32 32 H 1.08997 * 115.55354 * 274.41685 * 17 15 14 33 33 H 1.08999 * 117.49124 * 0.02562 * 18 17 15 34 34 H 1.09001 * 117.50171 * 145.01715 * 18 17 15 35 35 H 1.08993 * 117.50276 * 214.98380 * 19 17 15 36 36 H 1.09005 * 117.49316 * 359.97364 * 19 17 15 37 37 H 1.09003 * 109.54188 * 296.74787 * 22 20 15 38 38 H 1.08994 * 109.54720 * 57.02026 * 22 20 15 39 39 H 1.09002 * 109.52173 * 183.11077 * 23 22 20 40 40 H 1.09002 * 109.51818 * 62.92383 * 23 22 20 41 41 H 1.09003 * 109.47621 * 297.62401 * 24 23 22 42 42 H 1.09003 * 109.48063 * 177.59406 * 24 23 22 43 43 H 1.08999 * 109.47904 * 301.17714 * 26 25 24 44 44 H 1.08995 * 109.48999 * 181.14872 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3222 -1.1192 -4.0081 9 1 1.3445 -2.1611 -4.4126 10 1 2.4870 -0.1398 -5.1121 11 1 3.6306 -1.7563 -3.7123 12 6 2.0324 -0.7106 1.2303 13 8 2.7296 -1.6967 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 2.1902 -0.9445 3.6505 16 1 3.1900 -1.3366 3.4639 17 6 1.2443 -2.0989 3.9874 18 6 1.8649 -3.4806 4.2040 19 6 1.0612 -3.1928 2.9334 20 6 2.2376 0.0352 4.8248 21 1 2.5993 -0.4799 5.7146 22 6 3.1783 1.1956 4.4856 23 6 3.1574 2.2080 5.6349 24 6 1.7182 2.6755 5.8668 25 8 0.8907 1.5447 6.1468 26 6 0.8339 0.5867 5.0879 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.7085 1.1615 -3.4843 31 1 1.1490 0.5383 2.5436 32 1 0.3785 -1.8353 4.5948 33 1 2.9471 -3.5669 4.1069 34 1 1.4072 -4.1260 4.9536 35 1 0.0750 -3.6490 2.8476 36 1 1.6143 -3.0897 1.9998 37 1 4.1915 0.8165 4.3519 38 1 2.8445 1.6793 3.5676 39 1 3.7815 3.0639 5.3778 40 1 3.5382 1.7376 6.5415 41 1 1.3521 3.1816 4.9735 42 1 1.6913 3.3638 6.7116 43 1 0.4562 1.0655 4.1845 44 1 0.1699 -0.2298 5.3714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885490352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:32 Heat of formation + Delta-G solvation = -92.779174 kcal Electronic energy + Delta-G solvation = -23495.409689 eV Core-core repulsion = 20219.145184 eV Total energy + Delta-G solvation = -3276.264506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.42754 -39.94233 -38.16052 -35.76055 -35.71438 -34.03088 -32.73414 -31.73453 -27.63883 -27.15297 -26.05957 -24.51183 -23.71006 -23.13397 -21.39216 -21.28232 -20.50283 -18.34654 -17.85901 -17.32933 -17.22124 -16.80405 -16.38582 -16.17404 -15.74863 -15.51125 -15.13193 -14.87311 -14.61672 -14.42009 -13.97554 -13.58505 -13.47663 -13.14351 -12.97758 -12.74287 -12.68538 -12.53815 -12.40156 -12.33695 -12.10254 -12.05848 -11.96778 -11.63640 -11.29655 -11.12613 -11.03692 -10.94865 -10.56362 -10.36929 -10.20539 -9.80258 -8.14338 -6.23977 1.39820 1.40786 1.52234 1.98692 2.31960 2.49082 2.91569 3.09978 3.15578 3.53332 3.72888 3.82028 4.03071 4.07794 4.11667 4.18577 4.21494 4.30168 4.45951 4.50954 4.53746 4.73871 4.75897 4.80690 4.80948 4.84488 4.95620 4.95851 5.01219 5.04345 5.08977 5.10269 5.20674 5.29704 5.38226 5.44896 5.51578 5.70270 5.77562 5.95690 6.23319 6.26053 6.76891 6.89488 7.42255 7.62921 8.91429 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.004941 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.725300 B = 5665.183114 C = 6412.791999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 H 0.036 0.964 4 C -0.523 4.523 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.527 3.473 13 O -0.576 6.576 14 N -0.717 5.717 15 C 0.183 3.817 16 H 0.063 0.937 17 C -0.163 4.163 18 C -0.157 4.157 19 C -0.205 4.205 20 C -0.110 4.110 21 H 0.101 0.899 22 C -0.122 4.122 23 C -0.147 4.147 24 C 0.052 3.948 25 O -0.394 6.394 26 C 0.064 3.936 27 H 0.068 0.932 28 H 0.022 0.978 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.110 0.890 43 H 0.050 0.950 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 2.332 18.709 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.003 3.997 3 H 0.054 0.946 4 C -0.562 4.562 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.204 1.204 12 C 0.317 3.683 13 O -0.455 6.455 14 N -0.370 5.370 15 C 0.079 3.921 16 H 0.081 0.919 17 C -0.182 4.182 18 C -0.194 4.194 19 C -0.242 4.242 20 C -0.129 4.129 21 H 0.120 0.880 22 C -0.160 4.160 23 C -0.185 4.185 24 C -0.024 4.024 25 O -0.313 6.313 26 C -0.012 4.012 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.239 0.761 32 H 0.143 0.857 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.068 0.932 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.188 1.748 18.667 18.750 hybrid contribution 0.309 -0.140 -1.568 1.604 sum 0.121 1.608 17.099 17.175 Atomic orbital electron populations 1.21523 0.95270 0.99294 1.01402 1.18784 0.95134 0.95772 0.90046 0.94608 1.21278 1.31292 1.12557 0.91065 0.93311 1.25575 0.95293 0.95740 1.01373 1.69952 1.37376 1.23629 1.24178 0.85636 0.78616 0.78536 0.79331 1.20090 1.20097 1.20414 1.21332 0.78039 0.83593 0.85359 1.90451 1.39679 1.28097 1.87307 1.46121 1.54334 1.31914 1.04660 1.20423 0.96406 0.91161 0.84154 0.91902 1.22828 1.02201 0.89868 1.03316 1.22957 0.99316 0.97785 0.99371 1.23167 1.01940 1.04007 0.95128 1.21913 0.97595 0.95883 0.97546 0.88039 1.21659 0.99540 0.96035 0.98756 1.22147 0.97950 0.99673 0.98737 1.22778 0.89467 0.87947 1.02254 1.87919 1.68617 1.33122 1.41610 1.22720 0.95686 0.92192 0.90627 0.91304 0.95900 0.93340 0.92712 0.76051 0.85654 0.89731 0.86581 0.88962 0.89864 0.91922 0.92369 0.89662 0.90631 0.92972 0.87224 0.93224 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.87 71.98 0.64 -4.67 16 2 C 0.02 1.19 2.64 -12.29 -0.03 1.15 16 3 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 4 C -0.52 -30.15 8.37 25.60 0.21 -29.94 16 5 H 0.05 3.01 6.75 -2.91 -0.02 2.99 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -51.26 11.32 21.45 0.24 -51.02 16 8 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 C 0.53 23.34 6.48 87.66 0.57 23.91 16 13 O -0.58 -29.30 12.47 -3.04 -0.04 -29.34 16 14 N -0.72 -23.33 4.13 -442.54 -1.83 -25.16 16 15 C 0.18 5.04 2.03 44.99 0.09 5.13 16 16 H 0.06 2.07 7.34 -2.39 -0.02 2.06 16 17 C -0.16 -4.19 5.15 -10.79 -0.06 -4.24 16 18 C -0.16 -3.92 10.18 30.62 0.31 -3.61 16 19 C -0.21 -6.55 9.73 30.62 0.30 -6.25 16 20 C -0.11 -2.30 2.25 -10.70 -0.02 -2.32 16 21 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 22 C -0.12 -2.56 5.19 30.72 0.16 -2.40 16 23 C -0.15 -2.40 6.14 30.68 0.19 -2.21 16 24 C 0.05 0.86 6.84 72.01 0.49 1.35 16 25 O -0.39 -8.16 10.77 -148.98 -1.60 -9.76 16 26 C 0.06 1.27 5.69 72.01 0.41 1.68 16 27 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 28 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.78 7.56 -2.39 -0.02 1.76 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.40 11.47 6.03 -92.71 -0.56 10.91 16 32 H 0.13 2.62 6.13 -2.39 -0.01 2.60 16 33 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16 34 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.08 3.48 5.00 -2.38 -0.01 3.46 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.37 7.35 -2.39 -0.02 1.35 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.00 6.43 -2.39 -0.02 0.98 16 44 H 0.11 1.89 6.26 -2.39 -0.01 1.88 16 Total: -1.00 -65.81 337.12 2.94 -62.87 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.43 Total: 26.17 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 3.71 Total: -20.89 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -1.59 Total: -76.18 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.64 Total: -39.10 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.81 2.94 -62.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885490352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.905 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds