Wall clock time and date at job start Tue Mar 31 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50698 * 109.47177 * 240.00279 * 2 1 3 5 5 H 1.08001 * 120.00262 * 240.00171 * 4 2 1 6 6 C 1.37878 * 120.00084 * 59.99379 * 4 2 1 7 7 N 1.31513 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47198 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47470 * 120.00079 * 8 6 4 11 11 H 1.48501 * 109.47057 * 240.00285 * 8 6 4 12 12 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 13 13 O 1.21283 * 120.00363 * 120.00014 * 12 2 1 14 14 N 1.34784 * 119.99988 * 300.00132 * 12 2 1 15 15 C 1.46493 * 119.99864 * 179.72721 * 14 12 2 16 16 H 1.08999 * 109.47597 * 34.99540 * 15 14 12 17 17 C 1.53000 * 109.47099 * 274.99655 * 15 14 12 18 18 C 1.53005 * 117.49884 * 128.74861 * 17 15 14 19 19 C 1.53000 * 117.49822 * 60.08799 * 17 15 14 20 20 C 1.52996 * 109.47222 * 155.00033 * 15 14 12 21 21 H 1.08997 * 109.52626 * 59.87059 * 20 15 14 22 22 C 1.53181 * 109.52383 * 299.68112 * 20 15 14 23 23 C 1.53173 * 109.04220 * 183.11111 * 22 20 15 24 24 C 1.53096 * 109.16072 * 56.98070 * 23 22 20 25 25 O 1.42907 * 109.41476 * 302.39357 * 24 23 22 26 26 C 1.42899 * 114.09804 * 61.15618 * 25 24 23 27 27 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 28 28 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 30 30 H 0.97003 * 119.99629 * 180.02562 * 7 6 4 31 31 H 0.97000 * 119.99339 * 0.02562 * 14 12 2 32 32 H 1.08995 * 115.55397 * 274.41982 * 17 15 14 33 33 H 1.08999 * 117.49876 * 0.02562 * 18 17 15 34 34 H 1.09005 * 117.49821 * 145.02588 * 18 17 15 35 35 H 1.08994 * 117.50175 * 214.97903 * 19 17 15 36 36 H 1.08999 * 117.49665 * 0.02562 * 19 17 15 37 37 H 1.08994 * 109.54280 * 302.98590 * 22 20 15 38 38 H 1.09002 * 109.53974 * 63.24527 * 22 20 15 39 39 H 1.09009 * 109.52159 * 297.07995 * 23 22 20 40 40 H 1.08998 * 109.52704 * 176.88616 * 23 22 20 41 41 H 1.08997 * 109.48127 * 182.41267 * 24 23 22 42 42 H 1.08999 * 109.48939 * 62.38388 * 24 23 22 43 43 H 1.09000 * 109.48125 * 178.85749 * 26 25 24 44 44 H 1.09007 * 109.49129 * 58.83369 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1466 -2.2869 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1902 -0.9440 3.6506 16 1 3.1880 -1.3403 3.4625 17 6 1.2406 -2.0942 3.9916 18 6 1.8564 -3.4779 4.2092 19 6 1.0509 -3.1890 2.9399 20 6 2.2440 0.0375 4.8231 21 1 1.2470 0.4360 5.0106 22 6 3.2005 1.1855 4.4862 23 6 3.3061 2.1193 5.6957 24 6 3.7701 1.3147 6.9128 25 8 2.8535 0.2448 7.1525 26 6 2.7490 -0.6866 6.0738 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7087 1.1613 -3.4844 31 1 1.1488 0.5385 2.5435 32 1 0.3772 -1.8263 4.6005 33 1 2.9381 -3.5686 4.1097 34 1 1.3978 -4.1203 4.9609 35 1 0.0628 -3.6416 2.8572 36 1 1.6029 -3.0901 2.0052 37 1 4.1851 0.7823 4.2498 38 1 2.8170 1.7401 3.6298 39 1 2.3308 2.5608 5.9013 40 1 4.0272 2.9089 5.4846 41 1 3.8058 1.9653 7.7865 42 1 4.7629 0.9071 6.7222 43 1 2.0493 -1.4778 6.3432 44 1 3.7284 -1.1208 5.8720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885490353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:36 Heat of formation + Delta-G solvation = -78.905064 kcal Electronic energy + Delta-G solvation = -23295.014536 eV Core-core repulsion = 20019.351657 eV Total energy + Delta-G solvation = -3275.662879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10065 -38.74748 -36.86825 -34.58255 -33.70382 -32.80431 -31.49392 -30.19968 -26.41661 -25.13776 -25.01106 -22.90141 -22.40247 -21.98053 -20.32337 -20.05774 -19.26716 -16.54583 -16.45808 -16.07565 -15.77772 -15.57688 -15.12616 -14.72893 -14.65269 -14.39432 -13.76388 -13.61411 -13.07942 -12.77094 -12.66418 -12.37735 -12.32892 -11.73968 -11.48079 -11.33816 -11.12370 -11.07361 -10.99116 -10.83268 -10.69375 -10.65242 -10.39313 -10.21338 -10.07290 -9.94543 -9.82000 -9.59910 -8.94874 -8.56679 -8.36580 -8.27202 -6.02417 -4.05212 3.32290 3.39991 3.47635 3.63143 3.71127 3.83540 4.27011 4.48607 4.52772 4.67485 4.76875 4.91746 4.97688 5.15477 5.18244 5.29001 5.30866 5.31553 5.44309 5.51042 5.56968 5.62484 5.67031 5.78401 5.85751 5.89627 6.01874 6.09472 6.20707 6.23841 6.29843 6.43387 6.64137 6.75817 6.86081 6.95146 7.05296 7.15665 7.49528 7.77341 8.00773 8.17646 8.48170 9.04263 9.28263 9.60564 11.05205 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.004473 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.801134 B = 6258.326234 C = 6911.227182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.050 0.950 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.524 3.476 13 O -0.544 6.544 14 N -0.737 5.737 15 C 0.183 3.817 16 H 0.084 0.916 17 C -0.170 4.170 18 C -0.178 4.178 19 C -0.177 4.177 20 C -0.124 4.124 21 H 0.082 0.918 22 C -0.118 4.118 23 C -0.155 4.155 24 C 0.059 3.941 25 O -0.384 6.384 26 C 0.071 3.929 27 H 0.092 0.908 28 H 0.031 0.969 29 H 0.011 0.989 30 H 0.259 0.741 31 H 0.394 0.606 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.098 0.902 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 0.871 17.560 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.067 0.933 4 C -0.536 4.536 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.315 3.685 13 O -0.421 6.421 14 N -0.389 5.389 15 C 0.077 3.923 16 H 0.102 0.898 17 C -0.189 4.189 18 C -0.216 4.216 19 C -0.214 4.214 20 C -0.143 4.143 21 H 0.101 0.899 22 C -0.155 4.155 23 C -0.193 4.193 24 C -0.018 4.018 25 O -0.302 6.302 26 C -0.006 4.006 27 H 0.110 0.890 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.228 0.772 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.143 0.857 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.116 0.884 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.867 0.248 17.484 17.585 hybrid contribution 0.006 0.058 -1.059 1.061 sum 1.873 0.306 16.425 16.534 Atomic orbital electron populations 1.21722 0.96570 0.99770 1.00800 1.18863 0.94091 0.96763 0.89510 0.93250 1.21183 1.30748 1.12716 0.88980 0.90744 1.24949 0.95165 0.95071 0.99104 1.69884 1.37251 1.23159 1.23356 0.86430 0.78612 0.79798 0.82604 1.19582 1.21089 1.21111 1.21895 0.78075 0.84147 0.84428 1.90455 1.38170 1.26798 1.86681 1.46308 1.55259 1.32097 1.05254 1.20279 0.97267 0.90302 0.84445 0.89830 1.22695 1.01628 0.90199 1.04415 1.22916 0.99806 0.97921 1.00913 1.23325 1.01299 1.01019 0.95715 1.22010 1.00721 0.96346 0.95245 0.89936 1.21628 0.99774 0.96215 0.97924 1.22194 1.02575 0.98751 0.95763 1.22584 0.92198 0.88936 0.98093 1.87928 1.64049 1.37957 1.40288 1.22550 1.00917 0.91056 0.86043 0.88984 0.95028 0.97008 0.93082 0.77217 0.88333 0.89026 0.89433 0.89831 0.85696 0.91691 0.90733 0.91066 0.90891 0.89167 0.93294 0.88362 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.87 37.16 0.33 -2.64 16 2 C 0.03 0.70 2.64 -92.93 -0.25 0.46 16 3 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.50 -13.92 8.37 -34.44 -0.29 -14.20 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.52 11.36 6.48 -10.98 -0.07 11.29 16 13 O -0.54 -13.31 12.50 5.56 0.07 -13.24 16 14 N -0.74 -12.18 4.31 -53.81 -0.23 -12.41 16 15 C 0.18 2.59 1.86 -67.94 -0.13 2.46 16 16 H 0.08 1.36 7.33 -51.93 -0.38 0.98 16 17 C -0.17 -2.32 4.15 -90.62 -0.38 -2.70 16 18 C -0.18 -2.32 10.18 -26.69 -0.27 -2.59 16 19 C -0.18 -2.83 9.74 -26.69 -0.26 -3.09 16 20 C -0.12 -1.42 2.01 -90.48 -0.18 -1.60 16 21 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 22 C -0.12 -1.32 5.11 -26.55 -0.14 -1.46 16 23 C -0.16 -1.45 6.14 -26.59 -0.16 -1.62 16 24 C 0.06 0.55 6.84 37.21 0.25 0.80 16 25 O -0.38 -4.43 10.77 -35.23 -0.38 -4.81 16 26 C 0.07 0.77 5.84 37.20 0.22 0.99 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 28 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 5.83 7.85 -40.82 -0.32 5.51 16 32 H 0.10 1.22 8.11 -51.93 -0.42 0.80 16 33 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.13 2.51 5.03 -51.93 -0.26 2.25 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.89 7.59 -51.93 -0.39 0.50 16 39 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 1.01 7.31 -51.93 -0.38 0.63 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -29.93 342.81 -8.60 -38.54 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.42 Total: 6.88 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.41 Total: -12.40 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.40 Total: -36.85 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.31 Total: -18.05 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.93 -8.60 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885490353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.367 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds