Wall clock time and date at job start Tue Mar 31 2020 05:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46996 * 120.00312 * 8 6 4 11 11 H 1.48495 * 109.46665 * 239.99993 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.21281 * 119.99736 * 119.99813 * 12 2 1 14 14 N 1.34770 * 120.00019 * 300.00531 * 12 2 1 15 15 C 1.46512 * 119.99646 * 179.97438 * 14 12 2 16 16 H 1.08994 * 109.47002 * 324.99530 * 15 14 12 17 17 C 1.52996 * 109.46801 * 85.00197 * 15 14 12 18 18 C 1.52991 * 117.50319 * 8.61714 * 17 15 14 19 19 C 1.52995 * 60.00273 * 252.51378 * 18 17 15 20 20 C 1.53005 * 109.46718 * 204.99766 * 15 14 12 21 21 H 1.08999 * 109.51531 * 184.87657 * 20 15 14 22 22 C 1.53180 * 109.52335 * 64.68803 * 20 15 14 23 23 C 1.53171 * 109.03646 * 183.10859 * 22 20 15 24 24 C 1.53090 * 109.16093 * 56.98296 * 23 22 20 25 25 O 1.42901 * 109.41670 * 302.38806 * 24 23 22 26 26 C 1.42906 * 114.09803 * 61.15723 * 25 24 23 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 30 30 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 31 31 H 0.96992 * 120.00518 * 359.97438 * 14 12 2 32 32 H 1.09003 * 115.54761 * 154.33379 * 17 15 14 33 33 H 1.09005 * 117.50301 * 0.02562 * 18 17 15 34 34 H 1.08995 * 117.50263 * 145.02323 * 18 17 15 35 35 H 1.08998 * 117.50173 * 252.50999 * 19 18 17 36 36 H 1.09000 * 117.49968 * 107.49232 * 19 18 17 37 37 H 1.09000 * 109.54155 * 302.97890 * 22 20 15 38 38 H 1.09001 * 109.53886 * 63.24307 * 22 20 15 39 39 H 1.09002 * 109.52590 * 297.07559 * 23 22 20 40 40 H 1.09003 * 109.57217 * 176.91650 * 23 22 20 41 41 H 1.09003 * 109.48160 * 182.40693 * 24 23 22 42 42 H 1.08998 * 109.49550 * 62.38082 * 24 23 22 43 43 H 1.08994 * 109.48301 * 178.85899 * 26 25 24 44 44 H 1.09001 * 109.48719 * 58.83000 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 3.1456 -2.2874 -3.6039 10 1 1.1662 -1.5863 -4.8162 11 1 3.1467 -0.1870 -4.8165 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1947 -0.9411 3.6507 16 1 2.2310 -2.0138 3.4612 17 6 3.5974 -0.4361 3.9948 18 6 4.1249 0.7701 3.2154 19 6 4.6934 -0.6241 2.9440 20 6 1.2505 -0.6617 4.8218 21 1 1.6580 -1.1031 5.7313 22 6 -0.1242 -1.2699 4.5274 23 6 -1.0815 -0.9175 5.6700 24 6 -1.1406 0.6045 5.8247 25 8 0.1745 1.1089 6.0658 26 6 1.1014 0.8504 5.0093 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.7095 1.1620 -3.4843 31 1 1.1494 0.5388 2.5436 32 1 3.8845 -0.5234 5.0427 33 1 3.4726 1.2044 2.4577 34 1 4.7592 1.4768 3.7505 35 1 5.7016 -0.8348 3.3005 36 1 4.4152 -1.1075 2.0074 37 1 -0.5090 -0.8652 3.5913 38 1 -0.0341 -2.3533 4.4482 39 1 -0.7223 -1.3642 6.5971 40 1 -2.0769 -1.2995 5.4433 41 1 -1.7874 0.8597 6.6641 42 1 -1.5382 1.0477 4.9117 43 1 2.0697 1.2827 5.2613 44 1 0.7334 1.2966 4.0854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885490354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:38 Heat of formation + Delta-G solvation = -71.914521 kcal Electronic energy + Delta-G solvation = -23675.605368 eV Core-core repulsion = 20400.245622 eV Total energy + Delta-G solvation = -3275.359746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31391 -38.74342 -36.76655 -34.44585 -33.72908 -32.82996 -31.34956 -30.11048 -26.65755 -25.15917 -25.12930 -22.87857 -22.65134 -21.94442 -20.12965 -19.87566 -19.13277 -16.65003 -16.33512 -16.21630 -15.84953 -15.55779 -15.24294 -14.59018 -14.57977 -14.13322 -14.03371 -13.61766 -12.93077 -12.84557 -12.70714 -12.35968 -12.12443 -11.73882 -11.55729 -11.43143 -11.18259 -11.11306 -11.00494 -10.81162 -10.68106 -10.67464 -10.39466 -10.25761 -9.96058 -9.95039 -9.72991 -9.40560 -8.97174 -8.62409 -8.38495 -8.28935 -6.03905 -4.06775 3.31678 3.39455 3.47396 3.68907 3.78515 3.82818 4.17603 4.47242 4.59635 4.66576 4.77057 4.85223 5.02948 5.16825 5.21967 5.29899 5.31093 5.35968 5.47737 5.56833 5.61670 5.67537 5.73204 5.88195 5.89560 5.97233 6.00632 6.08169 6.22232 6.26089 6.33336 6.46864 6.59168 6.77041 6.80880 6.92061 7.08634 7.13745 7.45999 7.74093 7.98570 8.14070 8.44115 9.02783 9.24869 9.59142 11.03761 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.005046 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.412314 B = 5547.320476 C = 6260.941550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.050 0.950 4 C -0.498 4.498 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.522 3.478 13 O -0.540 6.540 14 N -0.740 5.740 15 C 0.181 3.819 16 H 0.089 0.911 17 C -0.173 4.173 18 C -0.176 4.176 19 C -0.183 4.183 20 C -0.122 4.122 21 H 0.087 0.913 22 C -0.119 4.119 23 C -0.154 4.154 24 C 0.058 3.942 25 O -0.384 6.384 26 C 0.066 3.934 27 H 0.030 0.970 28 H 0.009 0.991 29 H 0.093 0.907 30 H 0.260 0.740 31 H 0.393 0.607 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.098 0.902 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 0.644 16.514 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.536 4.536 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.312 3.688 13 O -0.416 6.416 14 N -0.395 5.395 15 C 0.076 3.924 16 H 0.107 0.893 17 C -0.192 4.192 18 C -0.213 4.213 19 C -0.220 4.220 20 C -0.142 4.142 21 H 0.105 0.895 22 C -0.157 4.157 23 C -0.192 4.192 24 C -0.019 4.019 25 O -0.302 6.302 26 C -0.010 4.010 27 H 0.050 0.950 28 H 0.028 0.972 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.229 0.771 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.931 0.120 16.437 16.550 hybrid contribution -0.028 -0.169 -0.977 0.992 sum -1.958 -0.049 15.460 15.583 Atomic orbital electron populations 1.21738 0.96697 0.99732 1.00801 1.18871 0.94035 0.96781 0.89570 0.93204 1.21173 1.30792 1.12729 0.88948 0.90726 1.24947 0.95139 0.95061 0.99121 1.69878 1.37241 1.23130 1.23401 0.86423 0.78611 0.79804 0.82575 1.19572 1.21107 1.21075 1.21918 0.78259 0.84142 0.84463 1.90467 1.37642 1.26845 1.86642 1.46481 1.55068 1.32465 1.05485 1.20263 0.89908 0.97978 0.84270 0.89292 1.22743 0.95337 1.04234 0.96900 1.22920 1.03834 0.91180 1.03390 1.23362 0.96696 0.99664 1.02229 1.22024 0.96021 0.97304 0.98803 0.89465 1.21649 0.94162 1.01304 0.98581 1.22181 1.00355 0.97054 0.99594 1.22588 0.84685 0.93162 1.01468 1.87924 1.20209 1.78564 1.43524 1.22641 0.93532 0.94374 0.90485 0.95032 0.97152 0.88881 0.93056 0.77143 0.88028 0.88332 0.89752 0.89994 0.85787 0.91018 0.91320 0.91280 0.90939 0.89185 0.93037 0.88366 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.87 37.16 0.33 -2.62 16 2 C 0.03 0.69 2.64 -92.92 -0.25 0.44 16 3 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 4 C -0.50 -13.84 8.37 -34.44 -0.29 -14.12 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 11.14 5.98 -10.99 -0.07 11.07 16 13 O -0.54 -13.11 12.49 5.56 0.07 -13.04 16 14 N -0.74 -11.95 2.82 -53.80 -0.15 -12.10 16 15 C 0.18 2.56 2.13 -67.92 -0.14 2.41 16 16 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 17 C -0.17 -2.35 4.75 -90.63 -0.43 -2.78 16 18 C -0.18 -2.53 9.73 -26.74 -0.26 -2.79 16 19 C -0.18 -2.92 9.82 -26.73 -0.26 -3.18 16 20 C -0.12 -1.39 2.19 -90.48 -0.20 -1.59 16 21 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 22 C -0.12 -1.34 5.23 -26.55 -0.14 -1.48 16 23 C -0.15 -1.45 6.14 -26.60 -0.16 -1.62 16 24 C 0.06 0.57 6.84 37.20 0.25 0.82 16 25 O -0.38 -4.57 10.77 -35.23 -0.38 -4.95 16 26 C 0.07 0.75 5.72 37.20 0.21 0.96 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.01 0.18 7.56 -51.93 -0.39 -0.21 16 29 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 31 H 0.39 5.76 5.96 -40.82 -0.24 5.52 16 32 H 0.10 1.19 8.11 -51.93 -0.42 0.77 16 33 H 0.10 1.58 6.67 -51.93 -0.35 1.23 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.12 2.48 5.02 -51.93 -0.26 2.22 16 37 H 0.07 0.89 7.67 -51.93 -0.40 0.50 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 1.08 7.47 -51.93 -0.39 0.69 16 44 H 0.05 0.59 6.20 -51.93 -0.32 0.26 16 LS Contribution 336.74 15.07 5.07 5.07 Total: -1.00 -29.59 336.74 -8.47 -38.06 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.20 Total: 7.60 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.49 Total: -12.98 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.48 Total: -36.41 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.31 Total: -18.00 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.59 -8.47 -38.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885490354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.856 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds