Wall clock time and date at job start Tue Mar 31 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47476 * 2 1 4 4 C 1.50703 * 109.47290 * 240.00163 * 2 1 3 5 5 H 1.08005 * 120.00342 * 245.42295 * 4 2 1 6 6 C 1.37877 * 119.99856 * 65.14685 * 4 2 1 7 7 N 1.31512 * 120.00366 * 355.40969 * 6 4 2 8 8 Si 1.86805 * 120.00145 * 175.40462 * 6 4 2 9 9 H 1.48507 * 109.46777 * 94.99978 * 8 6 4 10 10 H 1.48494 * 109.47411 * 214.99912 * 8 6 4 11 11 H 1.48502 * 109.47031 * 335.00402 * 8 6 4 12 12 C 1.50705 * 109.47255 * 120.00461 * 2 1 3 13 13 O 1.21278 * 120.00275 * 120.00079 * 12 2 1 14 14 N 1.34775 * 119.99391 * 299.99697 * 12 2 1 15 15 C 1.46505 * 119.99689 * 179.97438 * 14 12 2 16 16 H 1.08994 * 109.46968 * 325.00455 * 15 14 12 17 17 C 1.52999 * 109.47018 * 85.00084 * 15 14 12 18 18 C 1.53001 * 117.49781 * 8.74778 * 17 15 14 19 19 C 1.52998 * 117.49980 * 300.08850 * 17 15 14 20 20 C 1.53000 * 109.47017 * 205.00244 * 15 14 12 21 21 H 1.08997 * 109.51973 * 299.99958 * 20 15 14 22 22 C 1.53173 * 109.52388 * 60.12829 * 20 15 14 23 23 C 1.53179 * 109.03457 * 176.82193 * 22 20 15 24 24 C 1.53093 * 109.21388 * 303.11557 * 23 22 20 25 25 O 1.42900 * 109.41730 * 57.57300 * 24 23 22 26 26 C 1.42908 * 114.09419 * 298.84439 * 25 24 23 27 27 H 1.08997 * 109.46764 * 174.95791 * 1 2 3 28 28 H 1.08990 * 109.46753 * 294.95952 * 1 2 3 29 29 H 1.09004 * 109.46617 * 54.95813 * 1 2 3 30 30 H 0.96997 * 120.00208 * 180.02562 * 7 6 4 31 31 H 0.96999 * 120.00559 * 0.02562 * 14 12 2 32 32 H 1.09000 * 115.54984 * 154.41551 * 17 15 14 33 33 H 1.09000 * 117.50216 * 359.97438 * 18 17 15 34 34 H 1.09001 * 117.49989 * 145.01952 * 18 17 15 35 35 H 1.09002 * 117.50102 * 214.97429 * 19 17 15 36 36 H 1.09001 * 117.49989 * 359.97438 * 19 17 15 37 37 H 1.09001 * 109.54032 * 296.75306 * 22 20 15 38 38 H 1.09002 * 109.54329 * 57.01462 * 22 20 15 39 39 H 1.09001 * 109.53003 * 183.17311 * 23 22 20 40 40 H 1.09006 * 109.51937 * 63.04672 * 23 22 20 41 41 H 1.09000 * 109.47784 * 297.59185 * 24 23 22 42 42 H 1.09000 * 109.47926 * 177.55438 * 24 23 22 43 43 H 1.08995 * 109.47769 * 301.17288 * 26 25 24 44 44 H 1.09006 * 109.48453 * 181.14429 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5792 -1.6368 -1.1339 6 6 1.7890 -0.1806 -2.4800 7 7 1.0423 0.8948 -2.6043 8 14 2.5201 -0.9904 -3.9964 9 1 1.5263 -1.9222 -4.5876 10 1 2.8744 0.0525 -4.9923 11 1 3.7405 -1.7453 -3.6146 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9410 3.6507 16 1 2.2310 -2.0138 3.4612 17 6 3.5974 -0.4362 3.9948 18 6 4.1239 0.7718 3.2174 19 6 4.6929 -0.6225 2.9431 20 6 1.2505 -0.6616 4.8218 21 1 1.2137 0.4110 5.0120 22 6 -0.1535 -1.1694 4.4798 23 6 -1.0700 -0.9565 5.6885 24 6 -0.4733 -1.6691 6.9050 25 8 0.8436 -1.1707 7.1489 26 6 1.7576 -1.3858 6.0716 27 1 -0.3633 -1.0237 -0.0903 28 1 -0.3632 0.4336 0.9316 29 1 -0.3633 0.5901 -0.8414 30 1 0.8708 1.2672 -3.4833 31 1 1.1488 0.5384 2.5436 32 1 3.8851 -0.5249 5.0424 33 1 3.4711 1.2067 2.4605 34 1 4.7582 1.4778 3.7534 35 1 5.7015 -0.8332 3.2988 36 1 4.4145 -1.1050 2.0063 37 1 -0.5425 -0.6174 3.6242 38 1 -0.1087 -2.2318 4.2400 39 1 -2.0570 -1.3663 5.4742 40 1 -1.1558 0.1100 5.8971 41 1 -0.4262 -2.7408 6.7115 42 1 -1.0994 -1.4842 7.7779 43 1 1.8338 -2.4537 5.8673 44 1 2.7388 -0.9968 6.3442 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885490355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:40 Heat of formation + Delta-G solvation = -74.176346 kcal Electronic energy + Delta-G solvation = -23407.714752 eV Core-core repulsion = 20132.256926 eV Total energy + Delta-G solvation = -3275.457826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.19674 -38.84944 -36.75954 -34.45874 -33.68676 -32.71932 -31.62162 -30.24364 -26.49426 -25.13073 -25.07441 -22.94254 -22.46440 -21.98807 -20.33765 -19.74771 -19.21984 -16.69850 -16.42899 -16.20884 -15.77733 -15.67651 -15.20719 -14.71857 -14.47983 -14.26665 -13.93961 -13.59819 -12.87867 -12.81247 -12.63298 -12.47772 -12.21293 -11.80393 -11.50009 -11.43101 -11.16208 -11.10771 -11.00307 -10.77644 -10.71388 -10.64846 -10.36688 -10.26330 -9.98337 -9.95027 -9.67272 -9.56168 -8.97793 -8.59426 -8.37834 -8.28207 -6.04023 -4.05595 3.33011 3.39619 3.46999 3.65931 3.71355 3.85426 4.17230 4.47466 4.59171 4.65977 4.77151 4.90121 5.00706 5.14949 5.18746 5.30386 5.31432 5.35642 5.42451 5.47379 5.61102 5.64256 5.68650 5.82371 5.90479 5.97248 6.02544 6.09474 6.21650 6.23247 6.37114 6.48432 6.60790 6.77233 6.81070 6.92834 7.03469 7.14044 7.46170 7.72612 7.98538 8.13447 8.45933 9.03558 9.25898 9.59901 11.04636 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.004573 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.226269 B = 6121.099815 C = 6821.547195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.029 3.971 3 H 0.053 0.947 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.522 3.478 13 O -0.541 6.541 14 N -0.738 5.738 15 C 0.183 3.817 16 H 0.086 0.914 17 C -0.176 4.176 18 C -0.174 4.174 19 C -0.184 4.184 20 C -0.124 4.124 21 H 0.083 0.917 22 C -0.117 4.117 23 C -0.155 4.155 24 C 0.059 3.941 25 O -0.383 6.383 26 C 0.068 3.932 27 H 0.033 0.967 28 H 0.011 0.989 29 H 0.085 0.915 30 H 0.260 0.740 31 H 0.395 0.605 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 -0.930 17.291 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.312 3.688 13 O -0.417 6.417 14 N -0.391 5.391 15 C 0.077 3.923 16 H 0.104 0.896 17 C -0.195 4.195 18 C -0.211 4.211 19 C -0.220 4.220 20 C -0.143 4.143 21 H 0.102 0.898 22 C -0.155 4.155 23 C -0.193 4.193 24 C -0.018 4.018 25 O -0.302 6.302 26 C -0.009 4.009 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.229 0.771 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.634 -1.453 17.214 17.352 hybrid contribution -0.002 -0.008 -1.042 1.042 sum -1.636 -1.461 16.171 16.320 Atomic orbital electron populations 1.21727 0.96767 1.00459 0.99649 1.18874 0.93932 0.96875 0.89534 0.92969 1.21118 1.34635 1.08925 0.89135 0.90816 1.24946 0.95066 0.95116 0.99068 1.69902 1.37802 1.22226 1.23618 0.86479 0.79714 0.78958 0.82318 1.20827 1.21272 1.19679 1.21926 0.78283 0.84124 0.84426 1.90464 1.37687 1.26901 1.86641 1.46342 1.55011 1.32434 1.05351 1.20220 0.89900 0.97799 0.84373 0.89618 1.22831 0.95422 1.04406 0.96890 1.22910 1.03767 0.91123 1.03345 1.23379 0.96661 0.99761 1.02213 1.21974 0.95396 1.01780 0.95151 0.89814 1.21625 0.94057 1.01912 0.97888 1.22192 0.99444 1.01874 0.95773 1.22585 0.84031 0.97070 0.98102 1.87929 1.20518 1.81579 1.40153 1.22647 0.92806 0.99184 0.86257 0.94816 0.97033 0.89642 0.93033 0.77100 0.87928 0.88310 0.89800 0.89980 0.85768 0.90697 0.91699 0.90908 0.91082 0.93277 0.89154 0.92936 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.90 37.16 0.33 -2.52 16 2 C 0.03 0.70 2.58 -92.92 -0.24 0.46 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -13.91 8.30 -34.44 -0.29 -14.19 16 5 H 0.07 2.17 6.78 -52.48 -0.36 1.82 16 6 C 0.06 1.62 5.36 -17.82 -0.10 1.53 16 7 N -0.90 -25.01 11.58 55.43 0.64 -24.37 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.52 11.17 5.99 -10.98 -0.07 11.10 16 13 O -0.54 -13.17 12.49 5.56 0.07 -13.10 16 14 N -0.74 -11.97 2.84 -53.80 -0.15 -12.13 16 15 C 0.18 2.58 2.02 -67.93 -0.14 2.44 16 16 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 17 C -0.18 -2.41 5.50 -90.62 -0.50 -2.91 16 18 C -0.17 -2.57 9.74 -26.69 -0.26 -2.83 16 19 C -0.18 -2.96 9.82 -26.69 -0.26 -3.22 16 20 C -0.12 -1.40 2.02 -90.48 -0.18 -1.59 16 21 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.12 -1.31 5.11 -26.55 -0.14 -1.44 16 23 C -0.16 -1.45 6.13 -26.59 -0.16 -1.61 16 24 C 0.06 0.55 6.84 37.21 0.25 0.80 16 25 O -0.38 -4.39 10.77 -35.23 -0.38 -4.77 16 26 C 0.07 0.73 5.83 37.20 0.22 0.94 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.01 0.20 7.42 -51.93 -0.39 -0.19 16 29 H 0.08 2.10 6.45 -51.93 -0.33 1.77 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 5.75 7.77 -40.82 -0.32 5.43 16 32 H 0.10 1.19 6.14 -51.93 -0.32 0.87 16 33 H 0.10 1.62 6.67 -51.93 -0.35 1.27 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.12 2.50 5.01 -51.93 -0.26 2.24 16 37 H 0.07 0.90 7.57 -51.93 -0.39 0.50 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.95 6.27 -51.93 -0.33 0.63 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -29.85 338.21 -8.49 -38.34 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.22 Total: 7.27 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -1.52 Total: -13.04 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.49 Total: -36.49 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.31 Total: -17.87 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.85 -8.49 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885490355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.839 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds