Wall clock time and date at job start Tue Mar 31 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47476 * 2 1 4 4 C 1.50703 * 109.47290 * 240.00163 * 2 1 3 5 5 H 1.08005 * 120.00342 * 245.42295 * 4 2 1 6 6 C 1.37877 * 119.99856 * 65.14685 * 4 2 1 7 7 N 1.31512 * 120.00366 * 355.40969 * 6 4 2 8 8 Si 1.86805 * 120.00145 * 175.40462 * 6 4 2 9 9 H 1.48507 * 109.46777 * 94.99978 * 8 6 4 10 10 H 1.48494 * 109.47411 * 214.99912 * 8 6 4 11 11 H 1.48502 * 109.47031 * 335.00402 * 8 6 4 12 12 C 1.50705 * 109.47255 * 120.00461 * 2 1 3 13 13 O 1.21278 * 120.00275 * 120.00079 * 12 2 1 14 14 N 1.34775 * 119.99391 * 299.99697 * 12 2 1 15 15 C 1.46505 * 119.99689 * 179.97438 * 14 12 2 16 16 H 1.08994 * 109.46968 * 325.00455 * 15 14 12 17 17 C 1.52999 * 109.47018 * 85.00084 * 15 14 12 18 18 C 1.53001 * 117.49781 * 8.74778 * 17 15 14 19 19 C 1.52998 * 117.49980 * 300.08850 * 17 15 14 20 20 C 1.53000 * 109.47017 * 205.00244 * 15 14 12 21 21 H 1.08997 * 109.51973 * 299.99958 * 20 15 14 22 22 C 1.53173 * 109.52388 * 60.12829 * 20 15 14 23 23 C 1.53179 * 109.03457 * 176.82193 * 22 20 15 24 24 C 1.53093 * 109.21388 * 303.11557 * 23 22 20 25 25 O 1.42900 * 109.41730 * 57.57300 * 24 23 22 26 26 C 1.42908 * 114.09419 * 298.84439 * 25 24 23 27 27 H 1.08997 * 109.46764 * 174.95791 * 1 2 3 28 28 H 1.08990 * 109.46753 * 294.95952 * 1 2 3 29 29 H 1.09004 * 109.46617 * 54.95813 * 1 2 3 30 30 H 0.96997 * 120.00208 * 180.02562 * 7 6 4 31 31 H 0.96999 * 120.00559 * 0.02562 * 14 12 2 32 32 H 1.09000 * 115.54984 * 154.41551 * 17 15 14 33 33 H 1.09000 * 117.50216 * 359.97438 * 18 17 15 34 34 H 1.09001 * 117.49989 * 145.01952 * 18 17 15 35 35 H 1.09002 * 117.50102 * 214.97429 * 19 17 15 36 36 H 1.09001 * 117.49989 * 359.97438 * 19 17 15 37 37 H 1.09001 * 109.54032 * 296.75306 * 22 20 15 38 38 H 1.09002 * 109.54329 * 57.01462 * 22 20 15 39 39 H 1.09001 * 109.53003 * 183.17311 * 23 22 20 40 40 H 1.09006 * 109.51937 * 63.04672 * 23 22 20 41 41 H 1.09000 * 109.47784 * 297.59185 * 24 23 22 42 42 H 1.09000 * 109.47926 * 177.55438 * 24 23 22 43 43 H 1.08995 * 109.47769 * 301.17288 * 26 25 24 44 44 H 1.09006 * 109.48453 * 181.14429 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5792 -1.6368 -1.1339 6 6 1.7890 -0.1806 -2.4800 7 7 1.0423 0.8948 -2.6043 8 14 2.5201 -0.9904 -3.9964 9 1 1.5263 -1.9222 -4.5876 10 1 2.8744 0.0525 -4.9923 11 1 3.7405 -1.7453 -3.6146 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9410 3.6507 16 1 2.2310 -2.0138 3.4612 17 6 3.5974 -0.4362 3.9948 18 6 4.1239 0.7718 3.2174 19 6 4.6929 -0.6225 2.9431 20 6 1.2505 -0.6616 4.8218 21 1 1.2137 0.4110 5.0120 22 6 -0.1535 -1.1694 4.4798 23 6 -1.0700 -0.9565 5.6885 24 6 -0.4733 -1.6691 6.9050 25 8 0.8436 -1.1707 7.1489 26 6 1.7576 -1.3858 6.0716 27 1 -0.3633 -1.0237 -0.0903 28 1 -0.3632 0.4336 0.9316 29 1 -0.3633 0.5901 -0.8414 30 1 0.8708 1.2672 -3.4833 31 1 1.1488 0.5384 2.5436 32 1 3.8851 -0.5249 5.0424 33 1 3.4711 1.2067 2.4605 34 1 4.7582 1.4778 3.7534 35 1 5.7015 -0.8332 3.2988 36 1 4.4145 -1.1050 2.0063 37 1 -0.5425 -0.6174 3.6242 38 1 -0.1087 -2.2318 4.2400 39 1 -2.0570 -1.3663 5.4742 40 1 -1.1558 0.1100 5.8971 41 1 -0.4262 -2.7408 6.7115 42 1 -1.0994 -1.4842 7.7779 43 1 1.8338 -2.4537 5.8673 44 1 2.7388 -0.9968 6.3442 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885490355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:40 Heat of formation + Delta-G solvation = -91.702214 kcal Electronic energy + Delta-G solvation = -23408.474731 eV Core-core repulsion = 20132.256926 eV Total energy + Delta-G solvation = -3276.217805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44136 -40.02239 -38.13161 -35.71145 -35.55025 -33.95346 -32.81992 -31.96475 -27.63832 -27.15056 -26.01120 -24.26713 -23.79339 -23.20652 -21.43822 -20.94374 -20.69896 -18.38048 -17.90902 -17.37962 -17.13526 -16.90206 -16.54950 -16.17694 -15.60034 -15.55395 -15.07138 -14.91319 -14.60705 -14.31362 -13.82326 -13.59952 -13.37163 -13.24045 -13.04313 -12.88998 -12.74505 -12.57268 -12.37533 -12.26925 -12.14300 -12.02847 -11.99222 -11.59297 -11.21218 -11.18736 -11.04222 -10.79324 -10.58395 -10.46378 -10.18007 -9.80999 -8.16017 -6.24111 1.38650 1.40267 1.52497 1.98698 2.32962 2.50494 2.91394 3.00306 3.15216 3.58159 3.76132 3.88125 4.06504 4.08831 4.13180 4.15890 4.24883 4.36226 4.45668 4.51671 4.54315 4.71791 4.73793 4.76478 4.83332 4.86514 4.92479 4.96824 5.00500 5.07405 5.10579 5.12712 5.24362 5.28209 5.40001 5.44441 5.49822 5.70190 5.77955 5.91975 6.21136 6.26440 6.77232 6.89792 7.41841 7.62320 8.90942 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.004573 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.226269 B = 6121.099815 C = 6821.547195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.024 3.976 3 H 0.038 0.962 4 C -0.524 4.524 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.527 3.473 13 O -0.575 6.575 14 N -0.717 5.717 15 C 0.183 3.817 16 H 0.064 0.936 17 C -0.157 4.157 18 C -0.171 4.171 19 C -0.207 4.207 20 C -0.111 4.111 21 H 0.092 0.908 22 C -0.120 4.120 23 C -0.149 4.149 24 C 0.054 3.946 25 O -0.395 6.395 26 C 0.070 3.930 27 H 0.022 0.978 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.264 0.736 31 H 0.406 0.594 32 H 0.136 0.864 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.109 0.891 43 H 0.052 0.948 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -0.384 19.299 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.003 3.997 3 H 0.056 0.944 4 C -0.563 4.563 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.205 1.205 12 C 0.317 3.683 13 O -0.454 6.454 14 N -0.369 5.369 15 C 0.078 3.922 16 H 0.082 0.918 17 C -0.176 4.176 18 C -0.208 4.208 19 C -0.244 4.244 20 C -0.130 4.130 21 H 0.110 0.890 22 C -0.158 4.158 23 C -0.187 4.187 24 C -0.023 4.023 25 O -0.314 6.314 26 C -0.007 4.007 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.242 0.758 32 H 0.154 0.846 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.127 0.873 43 H 0.071 0.929 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.116 -0.880 19.253 19.389 hybrid contribution 0.129 -0.180 -1.642 1.657 sum -1.988 -1.061 17.611 17.755 Atomic orbital electron populations 1.21523 0.95300 0.99632 1.00749 1.18787 0.95086 0.95810 0.90003 0.94442 1.21260 1.35135 1.08614 0.91242 0.93377 1.25572 0.95329 0.95724 1.01317 1.69976 1.38047 1.22760 1.24310 0.85644 0.78757 0.78385 0.79475 1.20048 1.20078 1.20455 1.21338 0.78088 0.83590 0.85328 1.90462 1.39229 1.28438 1.87290 1.46022 1.54026 1.32275 1.04599 1.20351 0.91297 0.96332 0.84224 0.91769 1.22932 0.93989 1.02800 0.97885 1.22927 1.03641 0.91084 1.03131 1.23263 0.98534 1.01035 1.01578 1.21876 0.94668 1.02411 0.94080 0.88963 1.21637 0.94422 1.01097 0.98613 1.22154 0.99520 1.02207 0.94769 1.22761 0.83438 0.97240 0.98828 1.87922 1.21367 1.81808 1.40258 1.22654 0.93302 0.99154 0.85634 0.95842 0.93027 0.91936 0.92729 0.75779 0.84618 0.90398 0.87178 0.88167 0.90062 0.91606 0.92714 0.89686 0.90774 0.92928 0.87296 0.92925 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.10 8.90 71.98 0.64 -4.46 16 2 C 0.02 1.21 2.58 -12.28 -0.03 1.17 16 3 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.52 -30.17 8.30 25.60 0.21 -29.96 16 5 H 0.05 2.97 6.78 -2.91 -0.02 2.95 16 6 C 0.02 1.11 5.36 84.65 0.45 1.56 16 7 N -0.91 -51.36 11.58 21.45 0.25 -51.11 16 8 Si 0.95 45.17 29.54 68.60 2.03 47.20 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 12 C 0.53 23.14 5.99 87.66 0.52 23.66 16 13 O -0.57 -29.25 12.49 -3.02 -0.04 -29.29 16 14 N -0.72 -23.01 2.84 -442.53 -1.26 -24.27 16 15 C 0.18 4.97 2.02 44.99 0.09 5.06 16 16 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 17 C -0.16 -4.01 5.50 -10.79 -0.06 -4.07 16 18 C -0.17 -4.78 9.74 30.62 0.30 -4.49 16 19 C -0.21 -6.64 9.82 30.62 0.30 -6.33 16 20 C -0.11 -2.27 2.02 -10.71 -0.02 -2.29 16 21 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 22 C -0.12 -2.46 5.11 30.71 0.16 -2.31 16 23 C -0.15 -2.39 6.13 30.69 0.19 -2.20 16 24 C 0.05 0.85 6.84 72.01 0.49 1.34 16 25 O -0.39 -7.86 10.77 -148.98 -1.60 -9.47 16 26 C 0.07 1.29 5.83 72.01 0.42 1.71 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.83 7.42 -2.39 -0.02 1.81 16 29 H 0.06 3.10 6.45 -2.38 -0.02 3.08 16 30 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.41 11.31 7.77 -92.71 -0.72 10.59 16 32 H 0.14 2.62 6.14 -2.39 -0.01 2.61 16 33 H 0.08 2.52 6.67 -2.39 -0.02 2.50 16 34 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.08 3.41 5.01 -2.39 -0.01 3.40 16 37 H 0.07 1.46 7.57 -2.39 -0.02 1.44 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.11 1.75 6.27 -2.38 -0.01 1.73 16 Total: -1.00 -66.33 338.21 3.31 -63.02 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.27 Total: 25.52 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 3.67 Total: -21.60 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -1.01 Total: -75.38 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.64 Total: -38.76 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -66.33 3.31 -63.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885490355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.687 kcal (2) G-P(sol) polarization free energy of solvation -66.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds