Wall clock time and date at job start Tue Mar 31 2020 05:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47238 * 2 1 4 4 C 1.50700 * 109.47447 * 239.99563 * 2 1 3 5 5 H 1.08002 * 119.99933 * 240.00644 * 4 2 1 6 6 C 1.37876 * 120.00056 * 59.99841 * 4 2 1 7 7 N 1.31520 * 119.99676 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00047 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47129 * 59.99962 * 8 6 4 10 10 H 1.48498 * 109.47060 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46895 * 300.00106 * 8 6 4 12 12 C 1.50697 * 109.46904 * 119.99209 * 2 1 3 13 13 O 1.21290 * 119.99755 * 120.00422 * 12 2 1 14 14 N 1.34774 * 120.00439 * 300.00018 * 12 2 1 15 15 C 1.46500 * 120.00307 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47303 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47492 * 180.02562 * 16 15 14 18 18 H 1.09002 * 109.94151 * 306.01341 * 17 16 15 19 19 C 1.54166 * 109.86139 * 184.99944 * 17 16 15 20 20 C 1.55000 * 104.26861 * 238.76499 * 19 17 16 21 21 C 1.53896 * 101.94971 * 340.17838 * 20 19 17 22 22 C 1.52645 * 115.53876 * 266.04505 * 21 20 19 23 23 C 1.53994 * 86.73472 * 217.56540 * 22 21 20 24 24 C 1.52644 * 115.55763 * 165.02739 * 21 20 19 25 25 O 1.43196 * 105.06428 * 35.49648 * 21 20 19 26 26 H 1.08996 * 109.47345 * 300.00643 * 1 2 3 27 27 H 1.08999 * 109.46648 * 60.00633 * 1 2 3 28 28 H 1.09000 * 109.46777 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99606 * 180.02562 * 7 6 4 30 30 H 0.96999 * 119.99857 * 0.02562 * 14 12 2 31 31 H 1.08997 * 109.47160 * 60.00481 * 15 14 12 32 32 H 1.09000 * 109.47460 * 300.00554 * 15 14 12 33 33 H 1.08998 * 109.47372 * 60.00184 * 16 15 14 34 34 H 1.09002 * 109.46833 * 299.99986 * 16 15 14 35 35 H 1.09000 * 110.47344 * 120.06267 * 19 17 16 36 36 H 1.09003 * 110.57720 * 357.51456 * 19 17 16 37 37 H 1.09002 * 110.94333 * 98.35447 * 20 19 17 38 38 H 1.08997 * 110.93889 * 222.00955 * 20 19 17 39 39 H 1.08998 * 113.67649 * 332.02630 * 22 21 20 40 40 H 1.09004 * 113.67236 * 103.10679 * 22 21 20 41 41 H 1.08993 * 113.58223 * 269.97952 * 23 22 21 42 42 H 1.09002 * 113.64705 * 139.19543 * 23 22 21 43 43 H 1.08996 * 113.66459 * 256.87173 * 24 21 20 44 44 H 1.08992 * 113.66915 * 27.95242 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3216 -1.1207 -4.0078 9 1 1.8261 -2.5206 -4.0075 10 1 1.8262 -0.4211 -5.2204 11 1 3.8065 -1.1212 -4.0079 12 6 2.0323 -0.7102 1.2306 13 8 2.7297 -1.6964 1.1194 14 7 1.7067 -0.2497 2.4546 15 6 2.1946 -0.9405 3.6509 16 6 1.6841 -0.2194 4.9000 17 6 2.1941 -0.9405 6.1494 18 1 1.9257 -1.9960 6.1051 19 6 1.5842 -0.2975 7.4109 20 6 2.8122 0.1678 8.2343 21 6 3.9409 -0.6901 7.6357 22 6 4.2338 -1.9966 8.3687 23 6 5.7198 -1.7327 8.0626 24 6 5.3599 -0.2383 7.9708 25 8 3.6242 -0.8032 6.2438 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.7090 1.1611 -3.4845 30 1 1.1488 0.5388 2.5435 31 1 3.2845 -0.9409 3.6511 32 1 1.8309 -1.9680 3.6508 33 1 0.5942 -0.2194 4.8997 34 1 2.0476 0.8082 4.9003 35 1 1.0054 -1.0318 7.9712 36 1 0.9598 0.5548 7.1428 37 1 3.0056 1.2293 8.0794 38 1 2.6765 -0.0509 9.2934 39 1 3.9937 -1.9656 9.4314 40 1 3.8338 -2.8785 7.8681 41 1 6.0527 -2.1601 7.1169 42 1 6.3859 -1.9706 8.8920 43 1 5.8580 0.2822 7.1528 44 1 5.4380 0.2899 8.9210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886048636.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:04 Heat of formation + Delta-G solvation = -79.205102 kcal Electronic energy + Delta-G solvation = -22148.108335 eV Core-core repulsion = 18872.432446 eV Total energy + Delta-G solvation = -3275.675890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79544 -38.69872 -36.91265 -34.49625 -33.64948 -32.49599 -31.19979 -30.01372 -26.79234 -25.96186 -25.07382 -23.66773 -22.39864 -21.54774 -21.26989 -19.48476 -19.17304 -16.65540 -16.20145 -16.06466 -15.97799 -15.44382 -15.30975 -14.86262 -14.45158 -14.29811 -13.84749 -13.24088 -13.08567 -12.86000 -12.80525 -12.55830 -12.36600 -12.02201 -11.93635 -11.51475 -11.35523 -11.22411 -11.10837 -10.95422 -10.85074 -10.67720 -10.64519 -10.62919 -10.34785 -10.18082 -9.90135 -9.66881 -8.92352 -8.52613 -8.31478 -8.24939 -5.97752 -4.00449 3.40405 3.42135 3.43230 3.48242 3.85148 3.95515 4.18146 4.26971 4.46153 4.52286 4.55162 4.67603 4.73050 4.85421 5.04878 5.12346 5.21167 5.30849 5.35182 5.35427 5.47250 5.50932 5.59618 5.63613 5.65997 5.67257 5.80945 5.87497 5.98892 6.04964 6.13546 6.25985 6.45580 6.67470 6.88660 6.89427 6.99229 7.20418 7.54271 7.81562 8.05641 8.22716 8.54798 9.08589 9.35448 9.64976 11.09984 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033356 B = 0.002966 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.231472 B = 9439.147372 C = 9950.064779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.547 6.547 14 N -0.748 5.748 15 C 0.123 3.877 16 C -0.128 4.128 17 C 0.082 3.918 18 H 0.072 0.928 19 C -0.150 4.150 20 C -0.139 4.139 21 C 0.082 3.918 22 C -0.156 4.156 23 C -0.136 4.136 24 C -0.129 4.129 25 O -0.341 6.341 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.394 0.606 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 0.399 25.034 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.307 3.693 13 O -0.423 6.423 14 N -0.403 5.403 15 C -0.001 4.001 16 C -0.166 4.166 17 C 0.024 3.976 18 H 0.090 0.910 19 C -0.188 4.188 20 C -0.177 4.177 21 C 0.042 3.958 22 C -0.194 4.194 23 C -0.174 4.174 24 C -0.167 4.167 25 O -0.260 6.260 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.228 0.772 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.084 -0.224 24.608 24.697 hybrid contribution -0.210 -0.052 -0.580 0.619 sum 1.874 -0.276 24.028 24.103 Atomic orbital electron populations 1.21735 0.96626 0.99743 1.00849 1.18861 0.94089 0.96815 0.89468 0.93075 1.21133 1.30861 1.12769 0.89080 0.90853 1.24952 0.95167 0.95089 0.99085 1.69869 1.37246 1.23143 1.23546 0.86506 0.79300 0.79706 0.81621 1.20220 1.21412 1.20187 1.21947 0.78494 0.84302 0.84537 1.90528 1.37981 1.26994 1.86839 1.46287 1.55517 1.32652 1.05798 1.21121 0.99641 0.95799 0.83578 1.22005 1.00869 1.00503 0.93245 1.22738 0.81026 0.99232 0.94595 0.91035 1.22994 0.98311 1.01402 0.96062 1.22900 0.94361 1.00576 0.99842 1.22642 0.95115 0.95250 0.82841 1.23295 0.97228 0.98312 1.00525 1.22853 0.96154 0.96141 1.02228 1.22873 0.94315 0.97347 1.02136 1.88780 1.21591 1.93742 1.21879 0.96960 0.88892 0.95059 0.92976 0.77246 0.91592 0.92535 0.90148 0.90558 0.90640 0.90181 0.90352 0.90321 0.89430 0.90789 0.89674 0.91409 0.90301 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.87 37.16 0.33 -2.76 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 4 C -0.50 -14.65 8.37 -34.44 -0.29 -14.94 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.73 11.32 55.43 0.63 -25.10 16 8 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.52 12.41 7.15 -10.99 -0.08 12.33 16 13 O -0.55 -15.09 15.46 5.55 0.09 -15.01 16 14 N -0.75 -13.71 5.45 -60.30 -0.33 -14.04 16 15 C 0.12 1.96 5.59 -4.04 -0.02 1.94 16 16 C -0.13 -1.47 4.82 -26.73 -0.13 -1.60 16 17 C 0.08 0.87 3.43 -26.12 -0.09 0.78 16 18 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.15 -1.19 6.65 -25.07 -0.17 -1.36 16 20 C -0.14 -1.07 6.48 -25.21 -0.16 -1.23 16 21 C 0.08 0.77 1.12 -90.53 -0.10 0.67 16 22 C -0.16 -1.29 7.63 -26.39 -0.20 -1.49 16 23 C -0.14 -1.15 8.09 -25.71 -0.21 -1.35 16 24 C -0.13 -1.10 7.65 -26.40 -0.20 -1.30 16 25 O -0.34 -4.28 10.64 -35.23 -0.38 -4.66 16 26 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.39 6.15 7.89 -40.82 -0.32 5.83 16 31 H 0.07 1.19 7.90 -51.93 -0.41 0.78 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.58 7.70 -51.93 -0.40 0.18 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.48 7.96 -51.93 -0.41 0.06 16 39 H 0.09 0.57 8.01 -51.93 -0.42 0.15 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -32.87 351.52 -9.03 -41.90 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.66 Total: 2.57 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.66 Total: -8.27 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.30 Total: -39.14 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.29 Total: -19.67 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.87 -9.03 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886048636.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.301 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds