Wall clock time and date at job start Tue Mar 31 2020 05:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47135 * 2 1 4 4 C 1.50695 * 109.46775 * 119.99909 * 2 1 3 5 5 H 1.07998 * 120.00235 * 120.00437 * 4 2 1 6 6 C 1.37879 * 120.00206 * 300.00031 * 4 2 1 7 7 N 1.31515 * 120.00172 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00153 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47167 * 59.99892 * 8 6 4 10 10 H 1.48500 * 109.46980 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47196 * 299.99916 * 8 6 4 12 12 C 1.50701 * 109.47169 * 240.00003 * 2 1 3 13 13 O 1.21287 * 119.99421 * 240.00085 * 12 2 1 14 14 N 1.34773 * 119.99995 * 60.00252 * 12 2 1 15 15 C 1.46499 * 119.99775 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47160 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47133 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.65088 * 303.55583 * 17 16 15 19 19 C 1.55041 * 110.59110 * 180.65744 * 17 16 15 20 20 C 1.54976 * 102.11780 * 204.82212 * 19 17 16 21 21 C 1.53511 * 103.89337 * 20.86490 * 20 19 17 22 22 C 1.53140 * 114.90635 * 131.93018 * 21 20 19 23 23 C 1.53895 * 86.90228 * 91.39913 * 22 21 20 24 24 C 1.53158 * 114.89235 * 231.54993 * 21 20 19 25 25 O 1.43065 * 108.05831 * 1.71590 * 21 20 19 26 26 H 1.08997 * 109.47056 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47521 * 300.00205 * 1 2 3 28 28 H 1.09005 * 109.47048 * 60.00126 * 1 2 3 29 29 H 0.96999 * 120.00416 * 180.02562 * 7 6 4 30 30 H 0.96994 * 119.99798 * 359.97438 * 14 12 2 31 31 H 1.08995 * 109.47255 * 59.99792 * 15 14 12 32 32 H 1.09004 * 109.47158 * 300.00119 * 15 14 12 33 33 H 1.09004 * 109.47028 * 60.00043 * 16 15 14 34 34 H 1.08995 * 109.47236 * 300.00102 * 16 15 14 35 35 H 1.09003 * 110.87439 * 86.66444 * 19 17 16 36 36 H 1.09003 * 111.05490 * 323.05907 * 19 17 16 37 37 H 1.08997 * 110.54153 * 262.26083 * 20 19 17 38 38 H 1.09002 * 110.66324 * 139.52878 * 20 19 17 39 39 H 1.09001 * 113.64457 * 205.90446 * 22 21 20 40 40 H 1.09004 * 113.64407 * 336.89463 * 22 21 20 41 41 H 1.08997 * 113.59972 * 270.38750 * 23 22 21 42 42 H 1.09000 * 113.59363 * 139.53860 * 23 22 21 43 43 H 1.08999 * 113.64035 * 23.08378 * 24 21 20 44 44 H 1.08994 * 113.64543 * 154.07980 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8277 -0.4191 5.2205 11 1 1.8278 -2.5198 4.0082 12 6 2.0324 -0.7104 -1.2305 13 8 2.7297 -1.6965 -1.1191 14 7 1.7068 -0.2499 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 6 1.6844 -0.2200 -4.8999 17 6 2.1945 -0.9412 -6.1492 18 1 3.2824 -1.0072 -6.1377 19 6 1.7054 -0.2215 -7.4323 20 6 1.7329 -1.3654 -8.4776 21 6 1.6924 -2.6428 -7.6272 22 6 0.6658 -3.6856 -8.0783 23 6 1.7863 -4.2937 -8.9403 24 6 2.7842 -3.6672 -7.9503 25 8 1.6063 -2.2575 -6.2520 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7086 1.1613 3.4844 30 1 1.1489 0.5385 -2.5435 31 1 1.8310 -1.9684 -3.6505 32 1 3.2848 -0.9414 -3.6508 33 1 2.0478 0.8077 -4.9003 34 1 0.5945 -0.2199 -4.8996 35 1 2.3902 0.5785 -7.7139 36 1 0.6936 0.1632 -7.3041 37 1 2.6506 -1.3253 -9.0643 38 1 0.8608 -1.3119 -9.1293 39 1 0.3268 -4.3410 -7.2760 40 1 -0.1554 -3.2673 -8.6605 41 1 1.8432 -3.8713 -9.9434 42 1 1.7957 -5.3837 -8.9380 43 1 3.6619 -3.2339 -8.4298 44 1 3.0354 -4.3173 -7.1124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886048638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:09 Heat of formation + Delta-G solvation = -81.067619 kcal Electronic energy + Delta-G solvation = -22090.729034 eV Core-core repulsion = 18814.972379 eV Total energy + Delta-G solvation = -3275.756654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.72399 -38.70284 -37.00958 -34.54095 -33.64806 -32.41534 -31.16875 -29.98248 -26.46979 -26.03637 -25.06800 -23.69292 -22.63413 -21.68970 -21.17797 -19.22320 -19.11598 -16.96814 -16.31167 -16.15657 -15.90261 -15.36653 -15.18801 -14.80745 -14.45681 -14.32729 -13.87130 -13.34470 -13.03279 -12.84453 -12.59206 -12.49086 -12.35704 -11.98833 -11.87639 -11.47844 -11.44709 -11.15186 -11.09007 -10.99573 -10.93384 -10.75871 -10.64737 -10.62395 -10.57150 -10.17716 -9.90050 -9.63318 -8.92052 -8.52701 -8.31580 -8.24852 -5.97611 -4.00339 3.40399 3.42163 3.48243 3.57877 3.84888 3.94301 4.17382 4.23037 4.38601 4.49076 4.52609 4.64431 4.69125 4.82709 5.05314 5.09455 5.23128 5.31608 5.35598 5.40850 5.46813 5.51750 5.54582 5.58683 5.61091 5.68132 5.74396 5.85701 5.95698 6.05444 6.13620 6.24383 6.45961 6.68715 6.89308 6.90408 7.00154 7.20318 7.54704 7.82183 8.05770 8.23008 8.54848 9.08674 9.35439 9.65067 11.10076 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035241 B = 0.002890 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.333592 B = 9686.248882 C =10060.334690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.547 6.547 14 N -0.748 5.748 15 C 0.123 3.877 16 C -0.124 4.124 17 C 0.081 3.919 18 H 0.073 0.927 19 C -0.150 4.150 20 C -0.129 4.129 21 C 0.077 3.923 22 C -0.128 4.128 23 C -0.140 4.140 24 C -0.152 4.152 25 O -0.351 6.351 26 H 0.030 0.970 27 H 0.092 0.908 28 H 0.012 0.988 29 H 0.261 0.739 30 H 0.394 0.606 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 -1.701 -25.150 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.307 3.693 13 O -0.423 6.423 14 N -0.403 5.403 15 C -0.001 4.001 16 C -0.161 4.161 17 C 0.023 3.977 18 H 0.091 0.909 19 C -0.187 4.187 20 C -0.167 4.167 21 C 0.037 3.963 22 C -0.166 4.166 23 C -0.178 4.178 24 C -0.189 4.189 25 O -0.270 6.270 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.228 0.772 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.221 -2.448 -24.735 24.857 hybrid contribution 0.119 0.093 0.553 0.573 sum -0.101 -2.355 -24.182 24.297 Atomic orbital electron populations 1.21737 0.96602 0.99798 1.00842 1.18859 0.94111 0.96777 0.89462 0.93094 1.21131 1.30863 1.12769 0.89079 0.90859 1.24952 0.95161 0.95092 0.99081 1.69864 1.37210 1.23169 1.23553 0.86511 0.79269 0.79736 0.81635 1.20216 1.21411 1.20198 1.21947 0.78501 0.84288 0.84532 1.90527 1.38060 1.26924 1.86835 1.46285 1.55551 1.32635 1.05792 1.21110 0.98656 0.96821 0.83551 1.21842 1.02239 0.99160 0.92899 1.23089 0.97390 0.82832 0.94402 0.90931 1.23206 1.02793 0.98035 0.94712 1.22645 1.03074 0.93040 0.97930 1.23122 0.97044 0.93506 0.82582 1.23118 0.96618 0.97503 0.99350 1.22708 0.96563 1.00699 0.97810 1.23453 0.97174 0.98659 0.99647 1.88894 1.80731 1.32829 1.24574 0.95033 0.88894 0.96947 0.92972 0.77226 0.91575 0.92499 0.90027 0.90463 0.90128 0.90214 0.90459 0.90262 0.89122 0.90985 0.90105 0.90825 0.91280 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.87 37.16 0.33 -2.79 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.63 8.37 -34.44 -0.29 -14.92 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.71 11.32 55.43 0.63 -25.09 16 8 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.52 12.39 7.15 -10.99 -0.08 12.31 16 13 O -0.55 -15.07 15.46 5.55 0.09 -14.98 16 14 N -0.75 -13.67 5.45 -60.29 -0.33 -14.00 16 15 C 0.12 1.96 5.59 -4.04 -0.02 1.93 16 16 C -0.12 -1.41 5.10 -26.73 -0.14 -1.54 16 17 C 0.08 0.86 3.34 -25.65 -0.09 0.77 16 18 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 19 C -0.15 -1.19 6.59 -24.61 -0.16 -1.36 16 20 C -0.13 -0.98 6.28 -25.42 -0.16 -1.14 16 21 C 0.08 0.75 1.53 -90.20 -0.14 0.61 16 22 C -0.13 -1.11 7.58 -26.19 -0.20 -1.31 16 23 C -0.14 -1.01 7.90 -25.80 -0.20 -1.22 16 24 C -0.15 -1.33 7.57 -26.18 -0.20 -1.53 16 25 O -0.35 -4.47 10.65 -35.23 -0.38 -4.85 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 28 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.39 6.13 7.89 -40.82 -0.32 5.81 16 31 H 0.07 1.20 7.92 -51.93 -0.41 0.78 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 37 H 0.08 0.50 7.74 -51.93 -0.40 0.10 16 38 H 0.08 0.52 7.75 -51.93 -0.40 0.12 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.54 7.86 -51.93 -0.41 0.13 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.54 7.86 -51.93 -0.41 0.13 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 350.89 15.07 5.29 5.29 Total: -1.00 -32.90 350.89 -9.03 -41.92 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.62 Total: 2.55 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.68 Total: -8.14 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.30 Total: -39.08 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.29 Total: -19.83 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.90 -9.03 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886048638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.144 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds