Wall clock time and date at job start Tue Mar 31 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47028 * 2 1 4 4 C 1.50702 * 109.46859 * 239.99559 * 2 1 3 5 5 H 1.08007 * 119.99701 * 245.46375 * 4 2 1 6 6 C 1.37878 * 119.99909 * 65.47014 * 4 2 1 7 7 N 1.31507 * 120.00272 * 9.64392 * 6 4 2 8 8 Si 1.86803 * 119.99702 * 189.64970 * 6 4 2 9 9 H 1.48499 * 109.47150 * 84.99094 * 8 6 4 10 10 H 1.48493 * 109.46785 * 204.99344 * 8 6 4 11 11 H 1.48499 * 109.46880 * 324.99120 * 8 6 4 12 12 C 1.50701 * 109.47081 * 119.99676 * 2 1 3 13 13 O 1.21277 * 120.00241 * 120.00088 * 12 2 1 14 14 N 1.34777 * 120.00083 * 300.00002 * 12 2 1 15 15 C 1.46498 * 120.00330 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47049 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46724 * 180.02562 * 16 15 14 18 18 H 1.08994 * 109.85093 * 54.04850 * 17 16 15 19 19 C 1.54163 * 109.85373 * 175.00495 * 17 16 15 20 20 C 1.55004 * 104.27046 * 121.24276 * 19 17 16 21 21 C 1.53899 * 101.92029 * 19.78263 * 20 19 17 22 22 C 1.52638 * 115.55309 * 195.01064 * 21 20 19 23 23 C 1.53988 * 86.73755 * 217.58429 * 22 21 20 24 24 C 1.52655 * 115.53855 * 93.99553 * 21 20 19 25 25 O 1.43095 * 105.11469 * 324.52075 * 21 20 19 26 26 H 1.09004 * 109.47079 * 183.69893 * 1 2 3 27 27 H 1.08999 * 109.47524 * 303.69767 * 1 2 3 28 28 H 1.08997 * 109.47503 * 63.69873 * 1 2 3 29 29 H 0.96993 * 120.00384 * 179.97438 * 7 6 4 30 30 H 0.97004 * 119.99966 * 359.97438 * 14 12 2 31 31 H 1.08998 * 109.46933 * 300.00448 * 15 14 12 32 32 H 1.09008 * 109.46605 * 59.99980 * 15 14 12 33 33 H 1.08997 * 109.47339 * 300.00188 * 16 15 14 34 34 H 1.08996 * 109.46824 * 60.00867 * 16 15 14 35 35 H 1.09010 * 110.47309 * 239.93448 * 19 17 16 36 36 H 1.09000 * 110.47674 * 2.41009 * 19 17 16 37 37 H 1.09000 * 110.94527 * 137.94616 * 20 19 17 38 38 H 1.09007 * 110.93759 * 261.63433 * 20 19 17 39 39 H 1.08993 * 113.67581 * 332.04516 * 22 21 20 40 40 H 1.09000 * 113.66511 * 103.12761 * 22 21 20 41 41 H 1.09007 * 113.58430 * 269.98972 * 23 22 21 42 42 H 1.08999 * 113.58312 * 139.19296 * 23 22 21 43 43 H 1.08988 * 113.67088 * 256.88886 * 24 21 20 44 44 H 1.08994 * 113.66848 * 27.97496 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5785 -1.6373 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.3011 1.0362 -2.5936 8 14 2.1736 -1.1793 -4.0101 9 1 1.0200 -2.0605 -4.3230 10 1 2.4211 -0.2634 -5.1524 11 1 3.3809 -2.0103 -3.7713 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.6851 -0.2188 4.9000 17 6 2.1952 -0.9400 6.1493 18 1 3.2798 -1.0370 6.1037 19 6 1.7925 -0.1505 7.4107 20 6 0.9447 -1.1530 8.2345 21 6 1.3770 -2.5028 7.6349 22 6 0.4778 -3.6900 7.9692 23 6 1.7665 -4.5279 8.0604 24 6 2.5111 -3.2153 8.3674 25 8 1.5889 -2.2425 6.2439 26 1 -0.3633 -1.0256 0.0663 27 1 -0.3634 0.5701 0.8550 28 1 -0.3634 0.4553 -0.9212 29 1 1.1343 1.4113 -3.4724 30 1 1.1493 0.5391 2.5436 31 1 1.8309 -1.9682 3.6507 32 1 3.2846 -0.9410 3.6509 33 1 2.0492 0.8086 4.8999 34 1 0.5952 -0.2181 4.9001 35 1 2.6779 0.1505 7.9709 36 1 1.1984 0.7226 7.1406 37 1 1.1969 -1.0985 9.2936 38 1 -0.1206 -0.9815 8.0799 39 1 -0.0462 -3.5883 8.9195 40 1 -0.1791 -3.9854 7.1510 41 1 2.0583 -4.9836 7.1142 42 1 1.7691 -5.2350 8.8900 43 1 3.4757 -3.1321 7.8669 44 1 2.5618 -2.9794 9.4303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886048639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:11 Heat of formation + Delta-G solvation = -80.579048 kcal Electronic energy + Delta-G solvation = -22159.524264 eV Core-core repulsion = 18883.788796 eV Total energy + Delta-G solvation = -3275.735468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80404 -38.70183 -36.91392 -34.49629 -33.61290 -32.50091 -31.22246 -30.08962 -26.80121 -25.96414 -25.04510 -23.68657 -22.42100 -21.56440 -21.27341 -19.48507 -19.18356 -16.65739 -16.17410 -16.08163 -15.99278 -15.49437 -15.26621 -14.86979 -14.44926 -14.26797 -13.85493 -13.24704 -13.09807 -12.85382 -12.78753 -12.56801 -12.36554 -12.00019 -11.96509 -11.60705 -11.35767 -11.23386 -11.13657 -10.94877 -10.87126 -10.77729 -10.66196 -10.57957 -10.34820 -10.21837 -9.89434 -9.66821 -8.97220 -8.44030 -8.32876 -8.28554 -6.01025 -3.99069 3.38471 3.43319 3.43354 3.50064 3.84859 3.95470 4.18087 4.26895 4.46217 4.52656 4.55197 4.67526 4.72867 4.85387 5.04737 5.12304 5.21012 5.30685 5.34522 5.35136 5.47193 5.50777 5.59582 5.63546 5.65915 5.67137 5.80864 5.87403 5.98768 6.04856 6.12538 6.25300 6.44023 6.60390 6.84606 6.89372 6.93012 7.19825 7.49805 7.70715 8.02796 8.18337 8.54807 9.10200 9.35272 9.65012 11.09744 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033761 B = 0.002965 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.150981 B = 9442.821591 C = 9834.355007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.027 3.973 3 H 0.058 0.942 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.547 6.547 14 N -0.749 5.749 15 C 0.123 3.877 16 C -0.129 4.129 17 C 0.082 3.918 18 H 0.072 0.928 19 C -0.150 4.150 20 C -0.139 4.139 21 C 0.082 3.918 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.156 4.156 25 O -0.341 6.341 26 H 0.032 0.968 27 H 0.017 0.983 28 H 0.075 0.925 29 H 0.260 0.740 30 H 0.394 0.606 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 -2.006 25.141 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.006 3.994 3 H 0.076 0.924 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.307 3.693 13 O -0.422 6.422 14 N -0.403 5.403 15 C -0.001 4.001 16 C -0.166 4.166 17 C 0.024 3.976 18 H 0.090 0.910 19 C -0.188 4.188 20 C -0.177 4.177 21 C 0.042 3.958 22 C -0.167 4.167 23 C -0.174 4.174 24 C -0.194 4.194 25 O -0.260 6.260 26 H 0.052 0.948 27 H 0.036 0.964 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.227 0.773 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.564 -2.747 24.721 24.922 hybrid contribution -0.029 0.143 -0.621 0.638 sum -1.593 -2.604 24.099 24.292 Atomic orbital electron populations 1.21669 0.97020 0.99127 1.00549 1.18874 0.93618 0.97365 0.89556 0.92405 1.21123 1.35086 1.08668 0.89159 0.90808 1.24943 0.95350 0.94719 0.99081 1.69957 1.45753 1.13992 1.23809 0.86529 0.78930 0.80034 0.82116 1.20567 1.21427 1.19777 1.21929 0.78580 0.84252 0.84498 1.90527 1.37998 1.26906 1.86816 1.46299 1.55581 1.32600 1.05805 1.21125 0.98660 0.96786 0.83577 1.22008 1.02192 0.99178 0.93254 1.22741 0.97324 0.82943 0.94603 0.91022 1.22997 1.00592 0.99130 0.96056 1.22902 1.00724 0.94206 0.99837 1.22626 0.96314 0.94046 0.82859 1.22873 0.97014 0.94652 1.02136 1.22855 0.96071 0.96230 1.02218 1.23297 0.98696 0.96857 1.00528 1.88764 1.81361 1.33959 1.21873 0.94848 0.96443 0.90655 0.93005 0.77263 0.91605 0.92512 0.90147 0.90562 0.90639 0.90179 0.90314 0.90355 0.88975 0.90308 0.89668 0.91410 0.90788 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.94 37.16 0.33 -2.57 16 2 C 0.03 0.69 2.50 -92.92 -0.23 0.46 16 3 H 0.06 1.54 8.09 -51.93 -0.42 1.12 16 4 C -0.50 -14.68 8.28 -34.44 -0.29 -14.96 16 5 H 0.07 2.29 6.79 -52.48 -0.36 1.93 16 6 C 0.06 1.71 5.17 -17.82 -0.09 1.62 16 7 N -0.90 -25.84 12.17 55.43 0.67 -25.17 16 8 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.52 12.36 7.15 -10.98 -0.08 12.29 16 13 O -0.55 -15.04 15.47 5.56 0.09 -14.95 16 14 N -0.75 -13.63 5.46 -60.29 -0.33 -13.96 16 15 C 0.12 1.95 5.59 -4.04 -0.02 1.93 16 16 C -0.13 -1.46 4.81 -26.73 -0.13 -1.59 16 17 C 0.08 0.86 3.43 -26.12 -0.09 0.77 16 18 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.15 -1.19 6.65 -25.06 -0.17 -1.35 16 20 C -0.14 -1.07 6.48 -25.20 -0.16 -1.23 16 21 C 0.08 0.77 1.12 -90.53 -0.10 0.67 16 22 C -0.13 -1.09 7.64 -26.40 -0.20 -1.30 16 23 C -0.14 -1.14 8.09 -25.72 -0.21 -1.35 16 24 C -0.16 -1.29 7.63 -26.39 -0.20 -1.49 16 25 O -0.34 -4.26 10.64 -35.23 -0.37 -4.64 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.33 7.67 -51.93 -0.40 -0.07 16 28 H 0.07 1.90 6.83 -51.93 -0.35 1.54 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.39 6.10 7.96 -40.82 -0.32 5.77 16 31 H 0.07 1.19 7.90 -51.93 -0.41 0.77 16 32 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.08 0.58 7.70 -51.93 -0.40 0.18 16 37 H 0.08 0.48 7.96 -51.93 -0.41 0.06 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.67 8.14 -51.94 -0.42 0.25 16 44 H 0.09 0.57 8.01 -51.93 -0.42 0.15 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -33.04 353.01 -8.99 -42.03 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.70 Total: 2.22 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.64 Total: -8.11 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.35 Total: -39.13 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.29 Total: -19.59 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.04 -8.99 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886048639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.551 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds