Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47028 * 2 1 4 4 C 1.50702 * 109.46859 * 239.99559 * 2 1 3 5 5 H 1.08007 * 119.99701 * 245.46375 * 4 2 1 6 6 C 1.37878 * 119.99909 * 65.47014 * 4 2 1 7 7 N 1.31507 * 120.00272 * 9.64392 * 6 4 2 8 8 Si 1.86803 * 119.99702 * 189.64970 * 6 4 2 9 9 H 1.48499 * 109.47150 * 84.99094 * 8 6 4 10 10 H 1.48493 * 109.46785 * 204.99344 * 8 6 4 11 11 H 1.48499 * 109.46880 * 324.99120 * 8 6 4 12 12 C 1.50701 * 109.47081 * 119.99676 * 2 1 3 13 13 O 1.21277 * 120.00241 * 120.00088 * 12 2 1 14 14 N 1.34777 * 120.00083 * 300.00002 * 12 2 1 15 15 C 1.46498 * 120.00330 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47049 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46724 * 180.02562 * 16 15 14 18 18 H 1.08994 * 109.85093 * 54.04850 * 17 16 15 19 19 C 1.54163 * 109.85373 * 175.00495 * 17 16 15 20 20 C 1.55004 * 104.27046 * 121.24276 * 19 17 16 21 21 C 1.53899 * 101.92029 * 19.78263 * 20 19 17 22 22 C 1.52638 * 115.55309 * 195.01064 * 21 20 19 23 23 C 1.53988 * 86.73755 * 217.58429 * 22 21 20 24 24 C 1.52655 * 115.53855 * 93.99553 * 21 20 19 25 25 O 1.43095 * 105.11469 * 324.52075 * 21 20 19 26 26 H 1.09004 * 109.47079 * 183.69893 * 1 2 3 27 27 H 1.08999 * 109.47524 * 303.69767 * 1 2 3 28 28 H 1.08997 * 109.47503 * 63.69873 * 1 2 3 29 29 H 0.96993 * 120.00384 * 179.97438 * 7 6 4 30 30 H 0.97004 * 119.99966 * 359.97438 * 14 12 2 31 31 H 1.08998 * 109.46933 * 300.00448 * 15 14 12 32 32 H 1.09008 * 109.46605 * 59.99980 * 15 14 12 33 33 H 1.08997 * 109.47339 * 300.00188 * 16 15 14 34 34 H 1.08996 * 109.46824 * 60.00867 * 16 15 14 35 35 H 1.09010 * 110.47309 * 239.93448 * 19 17 16 36 36 H 1.09000 * 110.47674 * 2.41009 * 19 17 16 37 37 H 1.09000 * 110.94527 * 137.94616 * 20 19 17 38 38 H 1.09007 * 110.93759 * 261.63433 * 20 19 17 39 39 H 1.08993 * 113.67581 * 332.04516 * 22 21 20 40 40 H 1.09000 * 113.66511 * 103.12761 * 22 21 20 41 41 H 1.09007 * 113.58430 * 269.98972 * 23 22 21 42 42 H 1.08999 * 113.58312 * 139.19296 * 23 22 21 43 43 H 1.08988 * 113.67088 * 256.88886 * 24 21 20 44 44 H 1.08994 * 113.66848 * 27.97496 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5785 -1.6373 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.3011 1.0362 -2.5936 8 14 2.1736 -1.1793 -4.0101 9 1 1.0200 -2.0605 -4.3230 10 1 2.4211 -0.2634 -5.1524 11 1 3.3809 -2.0103 -3.7713 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.6851 -0.2188 4.9000 17 6 2.1952 -0.9400 6.1493 18 1 3.2798 -1.0370 6.1037 19 6 1.7925 -0.1505 7.4107 20 6 0.9447 -1.1530 8.2345 21 6 1.3770 -2.5028 7.6349 22 6 0.4778 -3.6900 7.9692 23 6 1.7665 -4.5279 8.0604 24 6 2.5111 -3.2153 8.3674 25 8 1.5889 -2.2425 6.2439 26 1 -0.3633 -1.0256 0.0663 27 1 -0.3634 0.5701 0.8550 28 1 -0.3634 0.4553 -0.9212 29 1 1.1343 1.4113 -3.4724 30 1 1.1493 0.5391 2.5436 31 1 1.8309 -1.9682 3.6507 32 1 3.2846 -0.9410 3.6509 33 1 2.0492 0.8086 4.8999 34 1 0.5952 -0.2181 4.9001 35 1 2.6779 0.1505 7.9709 36 1 1.1984 0.7226 7.1406 37 1 1.1969 -1.0985 9.2936 38 1 -0.1206 -0.9815 8.0799 39 1 -0.0462 -3.5883 8.9195 40 1 -0.1791 -3.9854 7.1510 41 1 2.0583 -4.9836 7.1142 42 1 1.7691 -5.2350 8.8900 43 1 3.4757 -3.1321 7.8669 44 1 2.5618 -2.9794 9.4303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886048639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = -101.968726 kcal Electronic energy + Delta-G solvation = -22160.451790 eV Core-core repulsion = 18883.788796 eV Total energy + Delta-G solvation = -3276.662994 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52488 -40.52827 -37.76400 -35.96151 -35.70608 -33.38351 -32.80909 -31.57487 -27.78650 -27.15323 -26.65309 -24.94143 -23.73082 -22.67413 -22.12131 -20.97283 -20.15077 -18.39208 -17.81410 -17.37569 -16.88779 -16.74126 -16.33502 -16.10052 -16.08818 -15.75521 -14.91209 -14.65711 -14.52604 -14.24568 -13.74318 -13.60468 -13.52434 -13.20875 -12.96711 -12.93772 -12.81129 -12.69330 -12.58414 -12.33855 -12.17274 -12.09582 -11.99147 -11.89986 -11.59674 -11.33204 -11.09431 -10.99917 -10.54527 -10.44609 -10.31370 -9.96860 -8.20080 -6.25276 1.39783 1.40566 1.51753 1.93053 2.35195 2.53278 2.73615 3.12245 3.52060 3.61925 3.77584 3.84938 3.92231 4.01929 4.07488 4.16010 4.30286 4.36603 4.40220 4.57284 4.70447 4.72016 4.74528 4.78917 4.83366 4.91468 4.96091 4.97062 5.01278 5.02492 5.07942 5.08622 5.18820 5.25189 5.35619 5.43848 5.47403 5.59773 5.72257 5.83769 6.16426 6.18056 6.75315 6.87434 7.38933 7.55292 8.89594 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033761 B = 0.002965 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.150981 B = 9442.821591 C = 9834.355007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.024 3.976 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.517 3.483 13 O -0.592 6.592 14 N -0.725 5.725 15 C 0.125 3.875 16 C -0.116 4.116 17 C 0.076 3.924 18 H 0.066 0.934 19 C -0.144 4.144 20 C -0.134 4.134 21 C 0.066 3.934 22 C -0.128 4.128 23 C -0.141 4.141 24 C -0.150 4.150 25 O -0.376 6.376 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.266 0.734 30 H 0.411 0.589 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.802 -0.885 27.144 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.002 3.998 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.306 3.694 13 O -0.472 6.472 14 N -0.378 5.378 15 C 0.001 3.999 16 C -0.153 4.153 17 C 0.019 3.981 18 H 0.084 0.916 19 C -0.181 4.181 20 C -0.171 4.171 21 C 0.027 3.973 22 C -0.165 4.165 23 C -0.178 4.178 24 C -0.188 4.188 25 O -0.295 6.295 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.248 0.752 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.408 -1.584 26.763 26.918 hybrid contribution 0.237 -0.219 -1.210 1.253 sum -2.171 -1.802 25.553 25.708 Atomic orbital electron populations 1.21502 0.95053 0.99280 1.01305 1.18812 0.95159 0.96280 0.89509 0.93543 1.21262 1.36122 1.08377 0.91420 0.93601 1.25577 0.95044 0.95639 1.01411 1.70010 1.45665 1.14621 1.24730 0.85663 0.78585 0.78879 0.79113 1.19675 1.19893 1.20512 1.21631 0.78277 0.83651 0.85814 1.90504 1.40165 1.28891 1.87642 1.46016 1.54396 1.32538 1.04875 1.21223 0.98145 0.96093 0.84435 1.21968 1.02425 0.99860 0.91061 1.22824 0.96981 0.82865 0.95476 0.91576 1.22983 1.01473 0.99032 0.94636 1.22912 1.00684 0.92633 1.00900 1.22905 0.97116 0.95489 0.81820 1.22945 0.96663 0.94264 1.02668 1.22845 0.96367 0.96863 1.01744 1.23314 0.97555 0.96264 1.01647 1.88736 1.81636 1.35044 1.24122 0.95382 0.92251 0.92738 0.92507 0.75235 0.94075 0.93442 0.87684 0.89972 0.89121 0.89011 0.88090 0.90291 0.86464 0.92126 0.92021 0.89645 0.92166 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.18 8.94 71.98 0.64 -4.54 16 2 C 0.02 1.23 2.50 -12.29 -0.03 1.20 16 3 H 0.05 2.50 8.09 -2.39 -0.02 2.48 16 4 C -0.53 -32.00 8.28 25.60 0.21 -31.78 16 5 H 0.05 2.96 6.79 -2.91 -0.02 2.94 16 6 C 0.02 1.31 5.17 84.66 0.44 1.75 16 7 N -0.91 -52.45 12.17 21.45 0.26 -52.19 16 8 Si 0.95 45.96 29.55 68.60 2.03 47.98 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 12 C 0.52 25.09 7.15 87.66 0.63 25.72 16 13 O -0.59 -33.80 15.47 -3.02 -0.05 -33.85 16 14 N -0.72 -25.95 5.46 -463.05 -2.53 -28.48 16 15 C 0.12 3.96 5.59 86.38 0.48 4.44 16 16 C -0.12 -2.42 4.81 30.60 0.15 -2.27 16 17 C 0.08 1.51 3.43 30.99 0.11 1.61 16 18 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 19 C -0.14 -1.83 6.65 31.67 0.21 -1.62 16 20 C -0.13 -1.65 6.48 31.58 0.20 -1.45 16 21 C 0.07 1.16 1.12 -10.74 -0.01 1.15 16 22 C -0.13 -2.02 7.64 30.81 0.24 -1.79 16 23 C -0.14 -2.28 8.09 31.25 0.25 -2.03 16 24 C -0.15 -2.26 7.63 30.81 0.24 -2.02 16 25 O -0.38 -9.33 10.64 -148.98 -1.59 -10.92 16 26 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.06 2.16 7.67 -2.39 -0.02 2.14 16 28 H 0.05 2.72 6.83 -2.39 -0.02 2.70 16 29 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.41 11.88 7.96 -92.71 -0.74 11.14 16 31 H 0.04 1.53 7.90 -2.39 -0.02 1.51 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.09 0.98 7.70 -2.39 -0.02 0.96 16 37 H 0.10 0.81 7.96 -2.39 -0.02 0.79 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.11 1.11 8.01 -2.39 -0.02 1.09 16 Total: -1.00 -73.61 353.01 2.11 -71.50 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.23 Total: 17.58 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 3.75 Total: -11.63 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -2.27 Total: -80.67 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -1.63 Total: -44.77 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -73.61 2.11 -71.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886048639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.469 kcal (2) G-P(sol) polarization free energy of solvation -73.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds