Wall clock time and date at job start Tue Mar 31 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00149 * 2 1 4 4 O 1.20818 * 120.00048 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99861 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.46906 * 180.02562 * 5 3 2 7 7 N 1.46505 * 109.47038 * 179.97438 * 6 5 3 8 8 C 1.36934 * 119.99925 * 265.78846 * 7 6 5 9 9 H 1.08004 * 119.99488 * 146.21342 * 8 7 6 10 10 C 1.38810 * 120.00391 * 326.22570 * 8 7 6 11 11 N 1.31617 * 119.99894 * 337.66765 * 10 8 7 12 12 Si 1.86804 * 120.00090 * 157.68104 * 10 8 7 13 13 H 1.48498 * 109.47009 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47159 * 119.99485 * 12 10 8 15 15 H 1.48501 * 109.46703 * 239.99600 * 12 10 8 16 16 C 1.46496 * 119.99715 * 85.79462 * 7 6 5 17 17 C 1.53007 * 109.47168 * 89.99946 * 16 7 6 18 18 C 1.53005 * 109.46799 * 179.97438 * 17 16 7 19 19 H 1.09000 * 115.55971 * 29.31774 * 18 17 16 20 20 C 1.52997 * 117.50060 * 243.61879 * 18 17 16 21 21 C 1.52999 * 60.00356 * 252.51752 * 20 18 17 22 22 H 1.08995 * 117.49787 * 107.48728 * 21 20 18 23 23 C 1.52998 * 117.51643 * 252.52318 * 21 20 18 24 24 C 1.53003 * 117.49738 * 197.25119 * 23 21 20 25 25 C 1.53000 * 117.50223 * 128.62843 * 23 21 20 26 26 H 1.08998 * 109.46979 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46974 * 300.00055 * 1 2 3 28 28 H 1.08994 * 109.46948 * 60.00061 * 1 2 3 29 29 H 1.09000 * 109.47180 * 59.99722 * 5 3 2 30 30 H 1.08999 * 109.46738 * 299.99807 * 5 3 2 31 31 H 1.09000 * 109.47448 * 59.99862 * 6 5 3 32 32 H 1.08995 * 109.47378 * 299.99958 * 6 5 3 33 33 H 0.96997 * 120.00138 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.47394 * 329.99863 * 16 7 6 35 35 H 1.09005 * 109.46830 * 209.99767 * 16 7 6 36 36 H 1.09003 * 109.46969 * 60.00466 * 17 16 7 37 37 H 1.08996 * 109.47177 * 299.99902 * 17 16 7 38 38 H 1.09000 * 117.49956 * 0.02562 * 20 18 17 39 39 H 1.09000 * 117.49753 * 145.02414 * 20 18 17 40 40 H 1.08998 * 115.55285 * 342.95254 * 23 21 20 41 41 H 1.09002 * 117.49787 * 359.97438 * 24 23 21 42 42 H 1.08998 * 117.50340 * 145.01785 * 24 23 21 43 43 H 1.08997 * 117.49971 * 214.98157 * 25 23 21 44 44 H 1.09002 * 117.49702 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7419 0.0002 7 7 5.4633 2.8185 0.0002 8 6 6.1424 2.9407 1.1830 9 1 7.1112 2.4777 1.2996 10 6 5.5857 3.6593 2.2321 11 7 4.6637 4.5673 1.9916 12 14 6.1454 3.3380 3.9851 13 1 7.1838 2.2764 3.9864 14 1 6.7107 4.5847 4.5606 15 1 4.9862 2.8970 4.8017 16 6 6.1995 2.7646 -1.2651 17 6 6.3806 4.1826 -1.8107 18 6 7.1502 4.1262 -3.1319 19 1 7.0162 3.2155 -3.7157 20 6 8.5229 4.8002 -3.1793 21 6 7.3327 5.4371 -3.8995 22 1 6.9047 6.3396 -3.4632 23 6 7.3127 5.3694 -5.4279 24 6 6.3737 6.3262 -6.1652 25 6 6.0442 4.8338 -6.0948 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 3.9558 0.7808 -0.8908 30 1 3.9564 0.7805 0.8892 31 1 3.6109 3.2355 0.8906 32 1 3.6102 3.2366 -0.8893 33 1 4.2750 5.0697 2.7246 34 1 5.6410 2.1668 -1.9853 35 1 7.1770 2.3121 -1.0976 36 1 6.9393 4.7804 -1.0905 37 1 5.4032 4.6350 -1.9781 38 1 8.8779 5.2835 -2.2691 39 1 9.2920 4.3330 -3.7942 40 1 8.2667 5.1362 -5.9007 41 1 5.7698 7.0037 -5.5613 42 1 6.7098 6.7228 -7.1232 43 1 6.1636 4.2484 -7.0065 44 1 5.2240 4.5292 -5.4447 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886308559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:37 Heat of formation + Delta-G solvation = -30.523003 kcal Electronic energy + Delta-G solvation = -22084.949489 eV Core-core repulsion = 18811.384613 eV Total energy + Delta-G solvation = -3273.564875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.91801 -38.55882 -36.48997 -35.86977 -35.03786 -31.71125 -31.12392 -28.56564 -27.27532 -24.58402 -23.74480 -23.09833 -22.37296 -20.99393 -20.19428 -19.52142 -19.46617 -17.26107 -16.44289 -16.11802 -15.96762 -15.64970 -14.99560 -14.80220 -14.10470 -13.99415 -13.49348 -13.30108 -13.01929 -12.74105 -12.39462 -12.19490 -11.92491 -11.72572 -11.56943 -11.32224 -11.17504 -11.01308 -10.84254 -10.65655 -10.60177 -10.50072 -10.47538 -10.27374 -10.10018 -9.90921 -9.86257 -9.67819 -9.43275 -9.05250 -8.49231 -6.66042 -5.79981 -3.34463 2.77215 3.18486 3.36186 3.44951 3.46713 3.72378 4.18993 4.47565 4.69856 4.94662 5.02705 5.18792 5.25877 5.29469 5.34176 5.36019 5.37406 5.50243 5.59618 5.64251 5.65808 5.76603 5.90586 5.91523 5.96931 6.11795 6.15154 6.16736 6.22640 6.30933 6.37591 6.46516 6.51053 6.63172 6.73343 6.83528 7.03318 7.07157 7.26306 7.75779 7.83851 8.28127 8.49475 9.16140 9.80144 10.35747 11.20884 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.004928 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.479728 B = 5680.329252 C = 7700.058015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.460 3.540 4 O -0.507 6.507 5 C -0.131 4.131 6 C 0.156 3.844 7 N -0.582 5.582 8 C -0.263 4.263 9 H 0.065 0.935 10 C 0.010 3.990 11 N -0.882 5.882 12 Si 0.894 3.106 13 H -0.275 1.275 14 H -0.290 1.290 15 H -0.288 1.288 16 C 0.150 3.850 17 C -0.105 4.105 18 C -0.130 4.130 19 H 0.097 0.903 20 C -0.174 4.174 21 C -0.133 4.133 22 H 0.102 0.898 23 C -0.119 4.119 24 C -0.181 4.181 25 C -0.178 4.178 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.031 0.969 33 H 0.255 0.745 34 H 0.033 0.967 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 -4.069 -11.257 11.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.288 6.288 3 C 0.303 3.697 4 O -0.394 6.394 5 C -0.172 4.172 6 C 0.028 3.972 7 N -0.301 5.301 8 C -0.392 4.392 9 H 0.083 0.917 10 C -0.190 4.190 11 N -0.524 5.524 12 Si 0.723 3.277 13 H -0.200 1.200 14 H -0.217 1.217 15 H -0.215 1.215 16 C 0.024 3.976 17 C -0.145 4.145 18 C -0.149 4.149 19 H 0.115 0.885 20 C -0.211 4.211 21 C -0.151 4.151 22 H 0.120 0.880 23 C -0.137 4.137 24 C -0.217 4.217 25 C -0.215 4.215 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.455 -3.650 -11.134 11.726 hybrid contribution -0.028 0.001 0.883 0.883 sum -0.483 -3.650 -10.251 10.892 Atomic orbital electron populations 1.23130 0.77823 1.02818 1.02199 1.86571 1.22466 1.34977 1.84753 1.24531 0.92851 0.80700 0.71583 1.90636 1.67360 1.36269 1.45103 1.22423 0.84487 1.05957 1.04302 1.20802 0.84095 0.88629 1.03640 1.43880 1.01023 1.83733 1.01459 1.19119 1.03565 1.27007 0.89535 0.91728 1.25132 0.99415 0.95298 0.99191 1.69992 1.30071 1.21527 1.30794 0.86374 0.78184 0.77840 0.85301 1.20005 1.21653 1.21466 1.20915 0.95635 0.93247 0.87799 1.21809 0.98878 1.01340 0.92464 1.22559 0.98229 0.95115 0.98951 0.88454 1.23098 0.91477 1.04330 1.02168 1.21844 1.04156 0.98105 0.90974 0.88013 1.21734 0.94466 1.04562 0.92917 1.22959 1.03834 0.93139 1.01817 1.22957 0.99804 0.96327 1.02419 0.88831 0.92264 0.92368 0.89657 0.88161 0.87257 0.95022 0.93472 0.94860 0.93700 0.91585 0.92581 0.88842 0.89574 0.88193 0.88801 0.89235 0.89251 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.11 10.56 -39.25 -0.41 -6.53 16 3 C 0.46 8.88 7.96 36.01 0.29 9.17 16 4 O -0.51 -11.19 15.73 -18.74 -0.29 -11.48 16 5 C -0.13 -2.56 6.14 -27.88 -0.17 -2.73 16 6 C 0.16 3.65 4.54 -4.04 -0.02 3.63 16 7 N -0.58 -13.85 2.45 -173.24 -0.43 -14.28 16 8 C -0.26 -6.89 9.49 -15.06 -0.14 -7.03 16 9 H 0.07 1.69 7.92 -52.48 -0.42 1.27 16 10 C 0.01 0.27 4.93 -17.43 -0.09 0.19 16 11 N -0.88 -25.24 11.32 55.49 0.63 -24.61 16 12 Si 0.89 21.19 29.61 -169.99 -5.03 16.16 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 16 C 0.15 3.01 5.65 -4.04 -0.02 2.99 16 17 C -0.11 -2.01 5.82 -26.73 -0.16 -2.16 16 18 C -0.13 -1.98 5.38 -90.62 -0.49 -2.47 16 19 H 0.10 1.41 8.07 -51.93 -0.42 1.00 16 20 C -0.17 -2.42 9.90 -26.73 -0.26 -2.68 16 21 C -0.13 -1.84 5.59 -90.62 -0.51 -2.35 16 22 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 23 C -0.12 -1.41 5.87 -90.62 -0.53 -1.94 16 24 C -0.18 -1.96 10.25 -26.73 -0.27 -2.24 16 25 C -0.18 -2.01 10.18 -26.73 -0.27 -2.28 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.10 1.98 8.14 -51.93 -0.42 1.55 16 31 H 0.11 2.99 5.27 -51.93 -0.27 2.72 16 32 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 35 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.07 1.42 7.87 -51.93 -0.41 1.02 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.36 8.03 -51.93 -0.42 0.94 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -29.45 368.72 -9.38 -38.83 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.82 Total: 4.76 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.58 Total: -8.41 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.20 Total: -38.89 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.71 Total: -18.01 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.45 -9.38 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886308559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.310 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds