Wall clock time and date at job start Tue Mar 31 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34236 * 116.99601 * 2 1 4 4 O 1.20820 * 119.99833 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99898 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.43033 * 298.91382 * 5 3 2 7 7 C 1.54893 * 110.48415 * 61.45245 * 5 3 2 8 8 C 1.54892 * 102.74566 * 156.75537 * 7 5 3 9 9 C 1.54265 * 104.19370 * 322.05318 * 8 7 5 10 10 H 1.08994 * 110.03653 * 264.28025 * 9 8 7 11 11 N 1.46900 * 110.02890 * 142.89571 * 9 8 7 12 12 C 1.46900 * 111.00006 * 86.45559 * 11 9 8 13 13 H 1.09002 * 110.01632 * 325.70236 * 12 11 9 14 14 C 1.53873 * 110.03223 * 87.09116 * 12 11 9 15 15 C 1.54269 * 106.59646 * 119.33513 * 14 12 11 16 16 C 1.54882 * 104.19831 * 23.61137 * 15 14 12 17 17 H 1.08994 * 110.75597 * 80.55637 * 16 15 14 18 18 C 1.50702 * 110.75854 * 203.74430 * 16 15 14 19 19 H 1.08003 * 120.00527 * 118.54176 * 18 16 15 20 20 C 1.37878 * 119.99656 * 298.54724 * 18 16 15 21 21 N 1.31513 * 119.99799 * 179.97438 * 20 18 16 22 22 Si 1.86799 * 119.99995 * 359.97438 * 20 18 16 23 23 H 1.48499 * 109.47064 * 90.00432 * 22 20 18 24 24 H 1.48510 * 109.46924 * 209.99865 * 22 20 18 25 25 H 1.48492 * 109.47390 * 330.00174 * 22 20 18 26 26 C 1.54273 * 110.07457 * 204.28180 * 12 11 9 27 27 C 1.53878 * 106.59925 * 23.61481 * 9 8 7 28 28 H 1.09003 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47493 * 299.99929 * 1 2 3 30 30 H 1.09007 * 109.47233 * 60.00428 * 1 2 3 31 31 H 1.08999 * 110.75507 * 38.43687 * 7 5 3 32 32 H 1.09002 * 110.75577 * 275.06453 * 7 5 3 33 33 H 1.09004 * 110.48364 * 203.37803 * 8 7 5 34 34 H 1.08994 * 110.60035 * 80.78949 * 8 7 5 35 35 H 1.00899 * 111.00490 * 210.40987 * 11 9 8 36 36 H 1.08996 * 110.03511 * 238.61751 * 14 12 11 37 37 H 1.09002 * 110.03347 * 0.04826 * 14 12 11 38 38 H 1.09000 * 110.48429 * 142.29450 * 15 14 12 39 39 H 1.09001 * 110.48672 * 264.92943 * 15 14 12 40 40 H 0.97004 * 119.99778 * 180.02562 * 21 20 18 41 41 H 1.09001 * 110.48533 * 335.76457 * 26 12 11 42 42 H 1.08999 * 110.48202 * 98.40384 * 26 12 11 43 43 H 1.09000 * 110.03316 * 119.27903 * 27 9 8 44 44 H 1.08998 * 110.03078 * 240.71025 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9718 0.8020 0.8949 7 6 4.1444 0.6107 -1.2736 8 6 5.5309 1.2872 -1.4126 9 6 5.2819 2.7502 -0.9915 10 1 5.1053 3.3674 -1.8723 11 7 6.4374 3.2617 -0.2424 12 6 7.4565 3.8030 -1.1516 13 1 7.4770 3.2249 -2.0755 14 6 7.1560 5.2801 -1.4607 15 6 8.3698 6.0906 -0.9611 16 6 9.5330 5.0680 -0.9553 17 1 9.9430 4.9436 -1.9575 18 6 10.6097 5.4892 0.0114 19 1 10.8604 4.8563 0.8499 20 6 11.2746 6.6826 -0.1745 21 7 12.2138 7.0505 0.6693 22 14 10.8414 7.7770 -1.6251 23 1 9.7678 8.7231 -1.2281 24 1 12.0437 8.5408 -2.0453 25 1 10.3685 6.9374 -2.7548 26 6 8.8424 3.7675 -0.4750 27 6 4.0328 2.7425 -0.0929 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 3.5198 0.8283 -2.1400 32 1 4.2518 -0.4649 -1.1337 33 1 5.8760 1.2410 -2.4456 34 1 6.2554 0.8169 -0.7479 35 1 6.1523 3.9538 0.4341 36 1 7.0308 5.4189 -2.5345 37 1 6.2545 5.5956 -0.9354 38 1 8.5872 6.9119 -1.6439 39 1 8.1885 6.4679 0.0454 40 1 12.6814 7.8903 0.5387 41 1 8.7374 3.7695 0.6100 42 1 9.4047 2.8933 -0.8031 43 1 4.2840 3.1182 0.8990 44 1 3.2492 3.3558 -0.5376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886617601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:10 Heat of formation + Delta-G solvation = -102.361259 kcal Electronic energy + Delta-G solvation = -22281.721679 eV Core-core repulsion = 19005.041663 eV Total energy + Delta-G solvation = -3276.680016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.92971 -38.89632 -37.36206 -36.55644 -33.58174 -31.94705 -29.50266 -28.79822 -28.25653 -27.58443 -25.79777 -23.23767 -22.78591 -20.73217 -19.91343 -19.55847 -19.05517 -18.03468 -17.04565 -16.69523 -16.63900 -15.89869 -15.18765 -14.91875 -14.45414 -14.09435 -13.84682 -13.72819 -13.34988 -12.82540 -12.68990 -12.55873 -12.47561 -12.15464 -11.84044 -11.66297 -11.43837 -11.17794 -11.13744 -11.04786 -10.93457 -10.83419 -10.67994 -10.55385 -10.26499 -9.97622 -9.81087 -9.69475 -9.32261 -8.95157 -8.49907 -8.08514 -6.02633 -4.00564 1.92684 2.41691 3.31140 3.40172 3.42220 4.17961 4.27423 4.36377 4.45910 4.55754 4.75593 4.82685 4.97869 5.13687 5.19233 5.24273 5.25440 5.30226 5.34771 5.40307 5.47215 5.56673 5.63242 5.68597 5.82877 5.93639 6.00198 6.08922 6.11600 6.23779 6.29998 6.42082 6.49140 6.59201 6.75716 6.87770 6.94604 7.21446 7.43160 7.46382 7.64661 7.66974 7.83949 8.59447 9.02602 9.61052 11.10923 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.045098 B = 0.002983 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.727946 B = 9382.860036 C = 9525.229451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.508 6.508 5 C -0.083 4.083 6 H 0.117 0.883 7 C -0.109 4.109 8 C -0.113 4.113 9 C 0.081 3.919 10 H 0.048 0.952 11 N -0.676 5.676 12 C 0.082 3.918 13 H 0.069 0.931 14 C -0.150 4.150 15 C -0.128 4.128 16 C 0.011 3.989 17 H 0.029 0.971 18 C -0.506 4.506 19 H 0.074 0.926 20 C 0.068 3.932 21 N -0.904 5.904 22 Si 0.883 3.117 23 H -0.280 1.280 24 H -0.297 1.297 25 H -0.266 1.266 26 C -0.090 4.090 27 C -0.115 4.115 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.342 0.658 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.262 0.738 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.380 -14.026 -3.864 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.395 6.395 5 C -0.102 4.102 6 H 0.135 0.865 7 C -0.147 4.147 8 C -0.152 4.152 9 C -0.029 4.029 10 H 0.066 0.934 11 N -0.307 5.307 12 C -0.028 4.028 13 H 0.087 0.913 14 C -0.190 4.190 15 C -0.166 4.166 16 C -0.008 4.008 17 H 0.047 0.953 18 C -0.544 4.544 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.543 5.543 22 Si 0.713 3.287 23 H -0.206 1.206 24 H -0.224 1.224 25 H -0.191 1.191 26 C -0.128 4.128 27 C -0.153 4.153 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.162 0.838 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.190 -14.204 -3.764 25.786 hybrid contribution -0.921 1.752 -1.009 2.222 sum -22.111 -12.452 -4.774 25.821 Atomic orbital electron populations 1.23267 0.76537 1.03656 1.02528 1.86530 1.23276 1.33578 1.84066 1.23878 0.92199 0.81169 0.71730 1.90658 1.67175 1.36422 1.45275 1.21893 0.86113 0.99681 1.02506 0.86515 1.22466 0.96874 1.00232 0.95132 1.22458 0.96160 0.94734 1.01812 1.22138 0.89416 0.96125 0.95218 0.93370 1.60875 1.10965 1.42059 1.16819 1.22379 0.93046 0.92547 0.94797 0.91279 1.22897 0.98863 0.97109 1.00102 1.22767 0.95467 0.98277 1.00102 1.20100 0.92792 0.91011 0.96938 0.95258 1.21031 1.17014 1.05250 1.11079 0.90817 1.25011 0.94674 0.97716 0.95842 1.69910 1.24574 1.22976 1.36828 0.86888 0.77020 0.80844 0.83962 1.20628 1.22381 1.19129 1.22252 0.91854 0.98271 1.00466 1.22360 0.97580 0.93796 1.01538 0.88098 0.91923 0.91963 0.91321 0.90117 0.91554 0.89547 0.83840 0.93028 0.93041 0.93952 0.91567 0.92799 0.91280 0.92973 0.90091 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.35 10.54 -39.27 -0.41 -3.76 16 3 C 0.47 4.99 7.26 36.01 0.26 5.25 16 4 O -0.51 -6.81 15.22 -18.75 -0.29 -7.10 16 5 C -0.08 -0.77 3.36 -90.11 -0.30 -1.07 16 6 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 7 C -0.11 -0.91 6.30 -24.73 -0.16 -1.07 16 8 C -0.11 -1.13 6.35 -25.07 -0.16 -1.29 16 9 C 0.08 0.92 3.06 -66.59 -0.20 0.72 16 10 H 0.05 0.58 7.79 -51.93 -0.40 0.18 16 11 N -0.68 -9.17 5.96 -97.40 -0.58 -9.75 16 12 C 0.08 1.31 3.05 -66.59 -0.20 1.10 16 13 H 0.07 1.06 7.76 -51.93 -0.40 0.65 16 14 C -0.15 -2.53 6.32 -25.61 -0.16 -2.70 16 15 C -0.13 -2.71 5.07 -25.07 -0.13 -2.84 16 16 C 0.01 0.25 2.30 -89.78 -0.21 0.04 16 17 H 0.03 0.70 7.37 -51.93 -0.38 0.32 16 18 C -0.51 -14.16 9.12 -34.44 -0.31 -14.48 16 19 H 0.07 2.24 8.03 -52.48 -0.42 1.82 16 20 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 21 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 22 Si 0.88 22.07 24.46 -169.99 -4.16 17.91 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.27 -6.37 6.48 56.52 0.37 -6.01 16 26 C -0.09 -1.76 5.95 -25.07 -0.15 -1.91 16 27 C -0.11 -1.21 5.84 -25.61 -0.15 -1.36 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.13 -51.92 -0.42 -0.01 16 31 H 0.07 0.57 8.05 -51.93 -0.42 0.16 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.34 4.63 7.49 -39.29 -0.29 4.33 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.79 7.58 -51.93 -0.39 0.40 16 38 H 0.04 0.92 4.91 -51.93 -0.25 0.67 16 39 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.07 1.41 7.95 -51.93 -0.41 1.00 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 0.85 7.49 -51.93 -0.39 0.46 16 44 H 0.08 0.95 6.92 -51.93 -0.36 0.59 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -31.39 341.67 -7.94 -39.33 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.52 Total: 1.71 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.90 Total: -16.40 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.19 Total: -36.84 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.70 Total: -10.86 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.16 Total: 17.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.39 -7.94 -39.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886617601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.033 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds