Wall clock time and date at job start Tue Mar 31 2020 06:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34236 * 116.99601 * 2 1 4 4 O 1.20820 * 119.99833 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99898 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.43033 * 298.91382 * 5 3 2 7 7 C 1.54893 * 110.48415 * 61.45245 * 5 3 2 8 8 C 1.54892 * 102.74566 * 156.75537 * 7 5 3 9 9 C 1.54265 * 104.19370 * 322.05318 * 8 7 5 10 10 H 1.08994 * 110.03653 * 264.28025 * 9 8 7 11 11 N 1.46900 * 110.02890 * 142.89571 * 9 8 7 12 12 C 1.46900 * 111.00006 * 86.45559 * 11 9 8 13 13 H 1.09002 * 110.01632 * 325.70236 * 12 11 9 14 14 C 1.53873 * 110.03223 * 87.09116 * 12 11 9 15 15 C 1.54269 * 106.59646 * 119.33513 * 14 12 11 16 16 C 1.54882 * 104.19831 * 23.61137 * 15 14 12 17 17 H 1.08994 * 110.75597 * 80.55637 * 16 15 14 18 18 C 1.50702 * 110.75854 * 203.74430 * 16 15 14 19 19 H 1.08003 * 120.00527 * 118.54176 * 18 16 15 20 20 C 1.37878 * 119.99656 * 298.54724 * 18 16 15 21 21 N 1.31513 * 119.99799 * 179.97438 * 20 18 16 22 22 Si 1.86799 * 119.99995 * 359.97438 * 20 18 16 23 23 H 1.48499 * 109.47064 * 90.00432 * 22 20 18 24 24 H 1.48510 * 109.46924 * 209.99865 * 22 20 18 25 25 H 1.48492 * 109.47390 * 330.00174 * 22 20 18 26 26 C 1.54273 * 110.07457 * 204.28180 * 12 11 9 27 27 C 1.53878 * 106.59925 * 23.61481 * 9 8 7 28 28 H 1.09003 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47493 * 299.99929 * 1 2 3 30 30 H 1.09007 * 109.47233 * 60.00428 * 1 2 3 31 31 H 1.08999 * 110.75507 * 38.43687 * 7 5 3 32 32 H 1.09002 * 110.75577 * 275.06453 * 7 5 3 33 33 H 1.09004 * 110.48364 * 203.37803 * 8 7 5 34 34 H 1.08994 * 110.60035 * 80.78949 * 8 7 5 35 35 H 1.00899 * 111.00490 * 210.40987 * 11 9 8 36 36 H 1.08996 * 110.03511 * 238.61751 * 14 12 11 37 37 H 1.09002 * 110.03347 * 0.04826 * 14 12 11 38 38 H 1.09000 * 110.48429 * 142.29450 * 15 14 12 39 39 H 1.09001 * 110.48672 * 264.92943 * 15 14 12 40 40 H 0.97004 * 119.99778 * 180.02562 * 21 20 18 41 41 H 1.09001 * 110.48533 * 335.76457 * 26 12 11 42 42 H 1.08999 * 110.48202 * 98.40384 * 26 12 11 43 43 H 1.09000 * 110.03316 * 119.27903 * 27 9 8 44 44 H 1.08998 * 110.03078 * 240.71025 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9718 0.8020 0.8949 7 6 4.1444 0.6107 -1.2736 8 6 5.5309 1.2872 -1.4126 9 6 5.2819 2.7502 -0.9915 10 1 5.1053 3.3674 -1.8723 11 7 6.4374 3.2617 -0.2424 12 6 7.4565 3.8030 -1.1516 13 1 7.4770 3.2249 -2.0755 14 6 7.1560 5.2801 -1.4607 15 6 8.3698 6.0906 -0.9611 16 6 9.5330 5.0680 -0.9553 17 1 9.9430 4.9436 -1.9575 18 6 10.6097 5.4892 0.0114 19 1 10.8604 4.8563 0.8499 20 6 11.2746 6.6826 -0.1745 21 7 12.2138 7.0505 0.6693 22 14 10.8414 7.7770 -1.6251 23 1 9.7678 8.7231 -1.2281 24 1 12.0437 8.5408 -2.0453 25 1 10.3685 6.9374 -2.7548 26 6 8.8424 3.7675 -0.4750 27 6 4.0328 2.7425 -0.0929 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 3.5198 0.8283 -2.1400 32 1 4.2518 -0.4649 -1.1337 33 1 5.8760 1.2410 -2.4456 34 1 6.2554 0.8169 -0.7479 35 1 6.1523 3.9538 0.4341 36 1 7.0308 5.4189 -2.5345 37 1 6.2545 5.5956 -0.9354 38 1 8.5872 6.9119 -1.6439 39 1 8.1885 6.4679 0.0454 40 1 12.6814 7.8903 0.5387 41 1 8.7374 3.7695 0.6100 42 1 9.4047 2.8933 -0.8031 43 1 4.2840 3.1182 0.8990 44 1 3.2492 3.3558 -0.5376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886617601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:09 Heat of formation + Delta-G solvation = -122.197477 kcal Electronic energy + Delta-G solvation = -22282.581842 eV Core-core repulsion = 19005.041663 eV Total energy + Delta-G solvation = -3277.540179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.72065 -40.00585 -38.52214 -37.42216 -35.13036 -33.74188 -30.42713 -29.99399 -29.64285 -28.46963 -27.03420 -25.01818 -23.54844 -21.66701 -21.11542 -20.83977 -20.45112 -18.87980 -18.65615 -17.78404 -17.40450 -17.05733 -16.77294 -15.95990 -15.71557 -15.31731 -14.93864 -14.76809 -14.55214 -14.27265 -14.08208 -13.97307 -13.49307 -13.13530 -13.01700 -12.82829 -12.64443 -12.49374 -12.16874 -12.05965 -11.99872 -11.82961 -11.75092 -11.65700 -11.51894 -11.47680 -11.40447 -11.35211 -11.07876 -11.00789 -10.68021 -9.19679 -8.27193 -6.29460 1.12982 1.32241 1.35664 1.46393 1.74506 2.35124 3.08443 3.24758 3.47389 3.52508 3.81982 3.95271 3.99278 4.15987 4.26276 4.31353 4.33168 4.40918 4.46210 4.53794 4.58114 4.69008 4.71048 4.74313 4.80043 4.90920 4.91904 4.97229 5.02330 5.09376 5.12132 5.14725 5.19594 5.26428 5.35963 5.39332 5.50047 5.56148 5.68911 5.83612 6.31146 6.37401 6.57849 6.69338 6.77884 7.35765 8.90081 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.045098 B = 0.002983 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.727946 B = 9382.860036 C = 9525.229451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.470 3.530 4 O -0.541 6.541 5 C -0.081 4.081 6 H 0.130 0.870 7 C -0.100 4.100 8 C -0.111 4.111 9 C 0.082 3.918 10 H 0.048 0.952 11 N -0.677 5.677 12 C 0.096 3.904 13 H 0.086 0.914 14 C -0.141 4.141 15 C -0.128 4.128 16 C 0.003 3.997 17 H 0.028 0.972 18 C -0.510 4.510 19 H 0.031 0.969 20 C 0.008 3.992 21 N -0.954 5.954 22 Si 0.947 3.053 23 H -0.269 1.269 24 H -0.298 1.298 25 H -0.245 1.245 26 C -0.086 4.086 27 C -0.111 4.111 28 H 0.132 0.868 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.342 0.658 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.038 0.962 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.669 -15.133 -5.765 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.315 3.685 4 O -0.431 6.431 5 C -0.100 4.100 6 H 0.148 0.852 7 C -0.137 4.137 8 C -0.149 4.149 9 C -0.027 4.027 10 H 0.066 0.934 11 N -0.309 5.309 12 C -0.014 4.014 13 H 0.104 0.896 14 C -0.180 4.180 15 C -0.166 4.166 16 C -0.016 4.016 17 H 0.047 0.953 18 C -0.548 4.548 19 H 0.049 0.951 20 C -0.188 4.188 21 N -0.595 5.595 22 Si 0.774 3.226 23 H -0.195 1.195 24 H -0.225 1.225 25 H -0.169 1.169 26 C -0.124 4.124 27 C -0.149 4.149 28 H 0.150 0.850 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.162 0.838 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.507 -15.353 -5.670 28.643 hybrid contribution -0.204 1.999 -0.308 2.033 sum -23.711 -13.354 -5.978 27.862 Atomic orbital electron populations 1.23542 0.75075 1.05687 1.02362 1.86520 1.24751 1.32745 1.83553 1.24103 0.92642 0.81043 0.70759 1.90648 1.67960 1.37506 1.46986 1.21923 0.85389 0.99006 1.03679 0.85202 1.22431 0.95719 1.01005 0.94593 1.22426 0.96872 0.93644 1.01941 1.22198 0.88672 0.96902 0.94977 0.93390 1.60807 1.11644 1.41773 1.16629 1.22132 0.91493 0.92577 0.95185 0.89628 1.22846 0.97358 0.96562 1.01246 1.22633 0.96519 0.98037 0.99408 1.20084 0.92385 0.93736 0.95374 0.95340 1.21369 1.18238 1.04522 1.10689 0.95084 1.25897 0.94570 0.99456 0.98864 1.70067 1.26349 1.23836 1.39290 0.85849 0.76890 0.79047 0.80861 1.19492 1.22545 1.16875 1.22131 0.94131 0.96477 0.99637 1.22267 0.96845 0.94635 1.01142 0.85014 0.92185 0.92109 0.91084 0.88427 0.90921 0.90207 0.83827 0.91263 0.91285 0.94299 0.93246 0.92741 0.93052 0.92716 0.90267 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.97 10.54 -51.48 -0.54 -6.51 16 3 C 0.47 9.25 7.26 71.24 0.52 9.77 16 4 O -0.54 -14.00 15.22 21.98 0.33 -13.66 16 5 C -0.08 -1.32 3.36 -10.46 -0.04 -1.35 16 6 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 7 C -0.10 -1.37 6.30 31.89 0.20 -1.17 16 8 C -0.11 -1.87 6.35 31.67 0.20 -1.67 16 9 C 0.08 1.65 3.06 45.64 0.14 1.79 16 10 H 0.05 1.00 7.79 -2.39 -0.02 0.98 16 11 N -0.68 -16.87 5.96 -462.06 -2.75 -19.63 16 12 C 0.10 2.82 3.05 45.64 0.14 2.96 16 13 H 0.09 2.30 7.76 -2.39 -0.02 2.28 16 14 C -0.14 -4.31 6.32 31.32 0.20 -4.11 16 15 C -0.13 -5.20 5.07 31.67 0.16 -5.04 16 16 C 0.00 0.15 2.30 -10.25 -0.02 0.13 16 17 H 0.03 1.32 7.37 -2.39 -0.02 1.30 16 18 C -0.51 -29.43 9.12 25.60 0.23 -29.19 16 19 H 0.03 1.99 8.03 -2.91 -0.02 1.96 16 20 C 0.01 0.49 5.46 84.66 0.46 0.95 16 21 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 22 Si 0.95 45.49 24.46 68.60 1.68 47.17 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.24 -10.82 6.48 99.48 0.64 -10.18 16 26 C -0.09 -3.27 5.95 31.67 0.19 -3.08 16 27 C -0.11 -2.12 5.84 31.32 0.18 -1.94 16 28 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 30 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 31 H 0.07 0.97 8.05 -2.39 -0.02 0.95 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.08 1.49 8.05 -2.39 -0.02 1.48 16 35 H 0.34 8.62 7.49 -89.69 -0.67 7.95 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.89 7.58 -2.39 -0.02 1.87 16 38 H 0.04 1.59 4.91 -2.39 -0.01 1.58 16 39 H 0.05 2.14 8.04 -2.39 -0.02 2.12 16 40 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.05 2.12 7.95 -2.39 -0.02 2.10 16 42 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.08 1.54 7.49 -2.39 -0.02 1.52 16 44 H 0.07 1.55 6.92 -2.39 -0.02 1.53 16 Total: -1.00 -69.57 341.67 3.02 -66.56 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.24 Total: 17.05 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 3.76 Total: -30.46 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.46 Total: -80.14 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.21 Total: -20.17 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.68 Total: 47.17 kcal Total: -69.57 3.02 -66.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886617601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.642 kcal (2) G-P(sol) polarization free energy of solvation -69.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds