Wall clock time and date at job start Tue Mar 31 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34223 * 116.99851 * 2 1 4 4 O 1.20827 * 120.00534 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00049 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.43328 * 57.45845 * 5 3 2 7 7 C 1.54271 * 110.48378 * 294.77300 * 5 3 2 8 8 C 1.53876 * 106.59681 * 217.70502 * 7 5 3 9 9 C 1.54269 * 106.60165 * 0.02562 * 8 7 5 10 10 H 1.08999 * 110.59632 * 264.87792 * 9 8 7 11 11 N 1.46894 * 110.48767 * 142.28432 * 9 8 7 12 12 C 1.46897 * 111.00041 * 90.22595 * 11 9 8 13 13 H 1.09000 * 110.05720 * 326.41209 * 12 11 9 14 14 C 1.53872 * 110.03302 * 87.83187 * 12 11 9 15 15 C 1.54263 * 106.59848 * 119.28587 * 14 12 11 16 16 C 1.54891 * 104.19910 * 23.61014 * 15 14 12 17 17 H 1.08996 * 110.91525 * 80.44063 * 16 15 14 18 18 C 1.50698 * 110.75545 * 203.74547 * 16 15 14 19 19 H 1.08005 * 119.99819 * 113.32816 * 18 16 15 20 20 C 1.37875 * 120.00046 * 293.32157 * 18 16 15 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 C 1.54270 * 110.03026 * 204.99879 * 12 11 9 27 27 C 1.54893 * 104.19527 * 23.60462 * 9 8 7 28 28 H 1.08993 * 109.46702 * 60.00147 * 1 2 3 29 29 H 1.08997 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47054 * 300.00393 * 1 2 3 31 31 H 1.08993 * 110.03535 * 336.99403 * 7 5 3 32 32 H 1.09004 * 110.02671 * 98.38143 * 7 5 3 33 33 H 1.08995 * 110.03595 * 240.71451 * 8 7 5 34 34 H 1.09001 * 110.02630 * 119.28500 * 8 7 5 35 35 H 1.00902 * 110.99509 * 214.18030 * 11 9 8 36 36 H 1.09006 * 110.03185 * 238.56650 * 14 12 11 37 37 H 1.09005 * 110.03316 * 0.02562 * 14 12 11 38 38 H 1.09007 * 110.48832 * 264.92875 * 15 14 12 39 39 H 1.08997 * 110.49010 * 142.28824 * 15 14 12 40 40 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 41 41 H 1.09003 * 110.48406 * 98.42716 * 26 12 11 42 42 H 1.08997 * 110.60124 * 335.83529 * 26 12 11 43 43 H 1.08998 * 110.75487 * 80.36798 * 27 9 8 44 44 H 1.08995 * 110.75798 * 203.75077 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9755 0.7460 -0.8602 7 6 4.1367 0.6987 1.3131 8 6 5.3387 1.5804 1.6945 9 6 5.4566 2.6620 0.6008 10 1 6.1731 2.3589 -0.1626 11 7 5.8490 3.9489 1.1905 12 6 7.3108 4.0902 1.2208 13 1 7.7771 3.1182 1.3818 14 6 7.8087 4.7013 -0.1007 15 6 8.5074 6.0277 0.2628 16 6 8.9227 5.8450 1.7438 17 1 9.8398 5.2610 1.8215 18 6 9.0835 7.1810 2.4221 19 1 8.4050 7.4713 3.2107 20 6 10.0968 8.0326 2.0363 21 7 10.9228 7.6792 1.0758 22 14 10.2966 9.6883 2.8776 23 1 11.4509 10.4094 2.2836 24 1 10.5355 9.4807 4.3285 25 1 9.0618 10.4915 2.6893 26 6 7.7242 5.0667 2.3413 27 6 4.0314 2.7526 0.0010 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.3810 0.7379 2.0976 32 1 4.4615 -0.3303 1.1590 33 1 6.2476 0.9796 1.7254 34 1 5.1663 2.0476 2.6641 35 1 5.4214 4.7181 0.6969 36 1 8.5167 4.0259 -0.5811 37 1 6.9656 4.8934 -0.7644 38 1 7.8154 6.8638 0.1611 39 1 9.3861 6.1803 -0.3637 40 1 10.8193 6.8192 0.6392 41 1 8.0314 4.5178 3.2315 42 1 6.9066 5.7478 2.5773 43 1 3.3844 3.3612 0.6327 44 1 4.0640 3.1473 -1.0145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886617603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:15 Heat of formation + Delta-G solvation = -113.302054 kcal Electronic energy + Delta-G solvation = -22213.786430 eV Core-core repulsion = 18936.631986 eV Total energy + Delta-G solvation = -3277.154444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91549 -38.82356 -37.33304 -36.53361 -33.78846 -31.78806 -29.46352 -28.54551 -28.06790 -27.36295 -25.31090 -23.48496 -22.76784 -20.41559 -20.27679 -19.37300 -19.17264 -17.86252 -17.12941 -16.76616 -16.60794 -15.87698 -15.46183 -14.55152 -14.34095 -13.86842 -13.71474 -13.69330 -13.38060 -12.92514 -12.70048 -12.50560 -12.29433 -11.99016 -11.84849 -11.55692 -11.40158 -11.12297 -11.10225 -10.90374 -10.82077 -10.69478 -10.61340 -10.45546 -10.26475 -10.02791 -9.89428 -9.71160 -9.31408 -8.40219 -8.28100 -8.06026 -6.26766 -3.97834 1.93427 2.40980 3.47690 3.49102 3.67680 4.11371 4.27925 4.34468 4.58726 4.71696 4.76418 4.83988 4.85793 5.16024 5.18470 5.21136 5.25495 5.33446 5.37446 5.50106 5.53055 5.57966 5.67101 5.73606 5.86855 6.01842 6.03710 6.08950 6.15029 6.27251 6.39594 6.55337 6.60608 6.70896 6.91752 6.98997 7.11554 7.40733 7.46855 7.50236 7.69195 7.76620 8.34290 8.52408 8.96621 9.73788 11.11247 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042486 B = 0.002830 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.875376 B = 9893.150840 C =10027.919563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.085 4.085 6 H 0.112 0.888 7 C -0.107 4.107 8 C -0.115 4.115 9 C 0.082 3.918 10 H 0.052 0.948 11 N -0.675 5.675 12 C 0.083 3.917 13 H 0.067 0.933 14 C -0.152 4.152 15 C -0.113 4.113 16 C 0.032 3.968 17 H 0.021 0.979 18 C -0.589 4.589 19 H 0.048 0.952 20 C 0.018 3.982 21 N -0.916 5.916 22 Si 1.065 2.935 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.289 1.289 26 C -0.094 4.094 27 C -0.111 4.111 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.342 0.658 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.271 0.729 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.609 -17.001 -3.390 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.105 4.105 6 H 0.130 0.870 7 C -0.145 4.145 8 C -0.154 4.154 9 C -0.029 4.029 10 H 0.070 0.930 11 N -0.306 5.306 12 C -0.026 4.026 13 H 0.085 0.915 14 C -0.191 4.191 15 C -0.152 4.152 16 C 0.013 3.987 17 H 0.039 0.961 18 C -0.628 4.628 19 H 0.067 0.933 20 C -0.186 4.186 21 N -0.553 5.553 22 Si 0.894 3.106 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.215 1.215 26 C -0.132 4.132 27 C -0.149 4.149 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.162 0.838 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.962 -15.556 -2.717 22.453 hybrid contribution -1.040 -1.262 -1.120 1.982 sum -17.003 -16.817 -3.837 24.221 Atomic orbital electron populations 1.23269 0.76476 1.03639 1.02595 1.86522 1.23340 1.33641 1.84140 1.23789 0.92013 0.81228 0.71946 1.90680 1.67112 1.36357 1.44903 1.21897 0.86599 1.00046 1.01948 0.87016 1.22067 0.98120 0.99755 0.94560 1.22214 0.96878 0.95916 1.00369 1.22342 0.94478 0.91482 0.94554 0.92953 1.60773 1.09291 1.02888 1.57638 1.22375 0.85772 0.98821 0.95659 0.91514 1.22933 0.99659 0.99524 0.96968 1.22512 0.98627 0.93861 1.00177 1.19741 0.92500 0.95492 0.90952 0.96130 1.21960 1.16911 1.02198 1.21704 0.93348 1.25765 0.92860 1.03685 0.96301 1.70796 1.37653 1.23880 1.22947 0.83594 0.76136 0.75318 0.75530 1.20928 1.21526 1.21546 1.22315 0.99199 0.96292 0.95439 1.22676 0.96684 0.93485 1.02088 0.91941 0.88115 0.91860 0.91348 0.90575 0.91707 0.89950 0.83841 0.93160 0.93434 0.92771 0.92950 0.91752 0.93500 0.91806 0.88946 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.45 10.57 -39.24 -0.41 -3.86 16 3 C 0.47 5.15 7.11 36.01 0.26 5.41 16 4 O -0.50 -7.00 15.47 -18.75 -0.29 -7.29 16 5 C -0.09 -0.80 3.37 -90.10 -0.30 -1.11 16 6 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 7 C -0.11 -0.95 6.36 -25.61 -0.16 -1.12 16 8 C -0.12 -1.24 6.53 -25.61 -0.17 -1.41 16 9 C 0.08 0.98 2.99 -66.05 -0.20 0.78 16 10 H 0.05 0.63 7.82 -51.93 -0.41 0.22 16 11 N -0.68 -9.96 6.02 -96.84 -0.58 -10.55 16 12 C 0.08 1.43 3.07 -66.60 -0.20 1.23 16 13 H 0.07 1.11 7.86 -51.93 -0.41 0.70 16 14 C -0.15 -2.72 6.38 -25.62 -0.16 -2.89 16 15 C -0.11 -2.57 5.69 -25.07 -0.14 -2.71 16 16 C 0.03 0.79 2.38 -89.78 -0.21 0.58 16 17 H 0.02 0.55 7.91 -51.93 -0.41 0.14 16 18 C -0.59 -16.57 8.49 -34.44 -0.29 -16.86 16 19 H 0.05 1.36 7.77 -52.48 -0.41 0.96 16 20 C 0.02 0.51 5.36 -17.82 -0.10 0.41 16 21 N -0.92 -27.59 13.49 55.43 0.75 -26.84 16 22 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.09 -1.97 5.95 -25.07 -0.15 -2.12 16 27 C -0.11 -1.22 5.30 -24.72 -0.13 -1.36 16 28 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 31 H 0.07 0.63 7.83 -51.93 -0.41 0.22 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 35 H 0.34 5.08 7.84 -39.29 -0.31 4.77 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.78 7.56 -51.93 -0.39 0.39 16 38 H 0.05 1.29 8.04 -51.93 -0.42 0.87 16 39 H 0.05 1.27 6.66 -51.93 -0.35 0.92 16 40 H 0.27 8.05 5.56 -40.82 -0.23 7.82 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.39 7.94 -51.93 -0.41 0.98 16 43 H 0.09 1.18 7.46 -51.93 -0.39 0.79 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -31.33 347.86 -8.83 -40.16 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.55 Total: 2.69 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -0.90 Total: -19.87 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.16 Total: -37.38 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.70 Total: -11.16 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.33 -8.83 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886617603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.143 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds