Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20763 * 119.99987 * 2 1 4 4 C 1.50707 * 120.00168 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.46831 * 34.99283 * 4 2 1 6 6 C 1.52999 * 109.47195 * 154.99659 * 4 2 1 7 7 C 1.52998 * 109.46921 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.47344 * 300.00334 * 7 6 4 9 9 H 1.09007 * 109.46427 * 300.00201 * 8 7 6 10 10 N 1.46497 * 109.47036 * 179.97438 * 8 7 6 11 11 C 1.34777 * 119.99525 * 154.99621 * 10 8 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 8 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.52997 * 109.47000 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46940 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00043 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00213 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00201 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00100 * 20 18 16 22 22 H 1.48491 * 109.47340 * 210.00006 * 20 18 16 23 23 H 1.48499 * 109.47078 * 330.00388 * 20 18 16 24 24 C 1.53001 * 109.47065 * 59.99768 * 8 7 6 25 25 C 1.52998 * 109.47229 * 300.00303 * 24 8 7 26 26 H 1.08996 * 109.47173 * 269.99629 * 1 2 3 27 27 H 1.08997 * 109.47413 * 29.99953 * 1 2 3 28 28 H 1.09001 * 109.47088 * 150.00074 * 1 2 3 29 29 H 1.09002 * 109.46828 * 60.00213 * 6 4 2 30 30 H 1.08998 * 109.46936 * 299.99930 * 6 4 2 31 31 H 1.09001 * 109.47069 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47122 * 60.00484 * 7 6 4 33 33 H 0.97000 * 120.00580 * 335.00367 * 10 8 7 34 34 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 35 35 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 36 36 H 1.09000 * 109.46887 * 300.00372 * 14 13 11 37 37 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 38 38 H 1.08995 * 109.47672 * 299.99669 * 15 14 13 39 39 H 1.09001 * 109.47109 * 60.00906 * 15 14 13 40 40 H 0.97000 * 120.00572 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.46839 * 60.00194 * 24 8 7 42 42 H 1.08998 * 109.46617 * 180.02562 * 24 8 7 43 43 H 1.09002 * 109.47122 * 299.99718 * 25 24 8 44 44 H 1.09001 * 109.47069 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 1 1.7131 -2.0404 -0.5903 6 6 3.6477 -1.0929 -0.6102 7 6 4.4129 -2.4177 -0.6102 8 6 4.5591 -2.9224 0.8269 9 1 5.1063 -2.1866 1.4163 10 7 5.2912 -4.1912 0.8268 11 6 5.9739 -4.5753 1.9235 12 8 5.9818 -3.8707 2.9107 13 6 6.7220 -5.8835 1.9256 14 6 7.3999 -6.0813 3.2830 15 6 8.1588 -7.4098 3.2852 16 6 8.8269 -7.6043 4.6220 17 1 8.7205 -6.8555 5.3930 18 6 9.5741 -8.7381 4.8608 19 7 9.7042 -9.6498 3.9219 20 14 10.4017 -8.9796 6.5180 21 1 9.4777 -9.6967 7.4329 22 1 11.6412 -9.7778 6.3407 23 1 10.7440 -7.6560 7.0978 24 6 3.1718 -3.1346 1.4364 25 6 2.4066 -1.8097 1.4364 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 4.1951 -0.3575 -0.0204 30 1 3.5435 -0.7330 -1.6338 31 1 5.4013 -2.2664 -1.0440 32 1 3.8657 -3.1534 -1.1997 33 1 5.2848 -4.7549 0.0374 34 1 6.0243 -6.7014 1.7453 35 1 7.4780 -5.8711 1.1404 36 1 8.0975 -5.2634 3.4633 37 1 6.6439 -6.0937 4.0681 38 1 7.4609 -8.2273 3.1052 39 1 8.9148 -7.3976 2.5001 40 1 10.2302 -10.4473 4.0897 41 1 2.6247 -3.8702 0.8469 42 1 3.2760 -3.4936 2.4603 43 1 2.9538 -1.0740 2.0259 44 1 1.4182 -1.9610 1.8703 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887248354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = -120.164756 kcal Electronic energy + Delta-G solvation = -21559.054894 eV Core-core repulsion = 18281.602861 eV Total energy + Delta-G solvation = -3277.452033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56172 -39.53219 -37.70617 -34.32515 -34.05731 -32.05558 -31.44798 -30.91512 -29.38957 -27.59466 -24.28304 -23.11476 -23.01184 -20.61972 -20.52829 -19.78265 -19.51869 -16.97697 -16.54410 -16.13173 -16.06576 -15.63817 -15.38244 -15.22687 -14.44492 -14.42056 -14.12686 -13.75917 -13.47035 -13.27318 -12.88642 -12.73420 -12.55197 -12.37201 -12.24559 -12.01961 -11.70159 -11.57990 -11.49929 -11.30677 -10.84832 -10.78478 -10.60608 -10.56940 -10.51848 -9.87098 -9.65625 -9.62404 -9.23720 -8.99684 -8.97269 -8.30681 -5.96363 -3.97620 1.56957 2.95275 3.25588 3.35724 3.41476 3.46575 3.63699 4.24935 4.31944 4.50432 4.56607 4.69830 4.81303 4.85208 4.97118 4.99158 5.05824 5.12916 5.13121 5.22304 5.37055 5.39654 5.44623 5.53972 5.65602 5.70494 5.74196 5.74782 5.81730 5.84088 6.01042 6.08502 6.29632 6.55818 6.75132 6.95718 7.12835 7.18532 7.64229 7.72919 7.85605 8.04506 8.48115 8.50289 9.09507 9.66219 11.15119 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.048742 B = 0.002364 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.318429 B =11840.106578 C =12045.120346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.359 3.641 3 O -0.456 6.456 4 C -0.139 4.139 5 H 0.098 0.902 6 C -0.104 4.104 7 C -0.125 4.125 8 C 0.143 3.857 9 H 0.087 0.913 10 N -0.737 5.737 11 C 0.513 3.487 12 O -0.537 6.537 13 C -0.139 4.139 14 C -0.095 4.095 15 C 0.020 3.980 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.127 4.127 25 C -0.103 4.103 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.329 15.217 -13.558 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.234 3.766 3 O -0.329 6.329 4 C -0.158 4.158 5 H 0.116 0.884 6 C -0.142 4.142 7 C -0.163 4.163 8 C 0.038 3.962 9 H 0.105 0.895 10 N -0.390 5.390 11 C 0.301 3.699 12 O -0.413 6.413 13 C -0.179 4.179 14 C -0.133 4.133 15 C -0.017 4.017 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.166 4.166 25 C -0.141 4.141 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.894 16.121 -12.859 27.969 hybrid contribution 0.327 -0.673 0.406 0.851 sum -18.567 15.449 -12.453 27.175 Atomic orbital electron populations 1.22323 0.94497 1.04718 1.04758 1.24685 0.91925 0.90148 0.69848 1.90416 1.72053 1.35146 1.35326 1.21863 0.97749 0.96785 0.99373 0.88397 1.21380 0.94046 0.97449 1.01301 1.21799 1.01179 0.97250 0.96034 1.20919 0.92276 0.86636 0.96404 0.89497 1.46205 1.52819 1.22836 1.17123 1.21271 0.78079 0.88445 0.82120 1.90674 1.61954 1.55398 1.33294 1.21849 0.99854 0.93245 1.02939 1.21439 0.98876 1.00601 0.92366 1.19134 0.94781 0.90661 0.97131 1.21278 1.30367 1.04606 0.99288 0.92590 1.25025 0.96620 0.96076 0.96866 1.69961 1.41049 1.09780 1.32973 0.86588 0.78929 0.78167 0.84311 1.20688 1.21278 1.19845 1.21914 0.95475 0.96726 1.02471 1.21398 1.01120 0.97787 0.93772 0.88570 0.89775 0.89629 0.90614 0.91329 0.90841 0.91253 0.76782 0.89423 0.89430 0.92736 0.92757 0.96635 0.96615 0.93093 0.91505 0.90662 0.91103 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.90 10.25 36.01 0.37 -0.53 16 2 C 0.36 2.68 6.38 -29.03 -0.19 2.50 16 3 O -0.46 -5.23 16.84 6.00 0.10 -5.13 16 4 C -0.14 -0.90 2.45 -91.77 -0.22 -1.12 16 5 H 0.10 0.44 8.10 -51.93 -0.42 0.02 16 6 C -0.10 -0.78 4.74 -26.73 -0.13 -0.91 16 7 C -0.12 -0.92 5.39 -26.73 -0.14 -1.06 16 8 C 0.14 1.44 2.45 -67.93 -0.17 1.28 16 9 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 10 N -0.74 -8.24 5.08 -53.80 -0.27 -8.51 16 11 C 0.51 8.07 7.79 -10.98 -0.09 7.99 16 12 O -0.54 -10.64 15.65 5.55 0.09 -10.56 16 13 C -0.14 -2.27 5.70 -27.88 -0.16 -2.43 16 14 C -0.09 -2.06 4.44 -26.73 -0.12 -2.18 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 20 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.13 -1.16 5.49 -26.73 -0.15 -1.30 16 25 C -0.10 -0.77 5.18 -26.73 -0.14 -0.91 16 26 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.21 8.08 -51.93 -0.42 -0.21 16 29 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.40 3.31 8.60 -40.82 -0.35 2.96 16 34 H 0.09 1.30 8.14 -51.92 -0.42 0.87 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -34.91 359.85 -8.50 -43.41 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -7.87 Total: -3.14 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.68 Total: -12.17 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.46 Total: -34.96 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.19 Total: -15.68 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.91 -8.50 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887248354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.760 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds