Wall clock time and date at job start Tue Mar 31 2020 05:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47618 * 2 1 4 4 C 1.50703 * 109.47239 * 239.99668 * 2 1 3 5 5 H 1.08003 * 119.99971 * 240.00707 * 4 2 1 6 6 C 1.37872 * 119.99934 * 60.00222 * 4 2 1 7 7 N 1.31524 * 120.00003 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00267 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46777 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47162 * 119.99876 * 8 6 4 11 11 H 1.48495 * 109.46836 * 240.00024 * 8 6 4 12 12 C 1.50701 * 109.46705 * 119.99982 * 2 1 3 13 13 O 1.21286 * 119.99898 * 120.00270 * 12 2 1 14 14 N 1.34776 * 120.00500 * 299.99586 * 12 2 1 15 15 C 1.46496 * 120.00671 * 180.02562 * 14 12 2 16 16 H 1.09003 * 110.91738 * 328.61296 * 15 14 12 17 17 C 1.55345 * 110.85861 * 92.22159 * 15 14 12 18 18 C 1.54957 * 100.95758 * 152.19039 * 17 15 14 19 19 O 1.43701 * 105.14537 * 323.65244 * 18 17 15 20 20 C 1.43058 * 109.89078 * 24.37741 * 19 18 17 21 21 C 1.52815 * 110.03920 * 117.56059 * 20 19 18 22 22 C 1.53043 * 109.47859 * 62.06140 * 21 20 19 23 23 C 1.52987 * 109.46067 * 59.59367 * 22 21 20 24 24 C 1.53000 * 109.51207 * 299.76397 * 23 22 21 25 25 C 1.52818 * 110.02009 * 239.02418 * 20 19 18 26 26 H 1.08997 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46948 * 300.00378 * 1 2 3 28 28 H 1.08999 * 109.46419 * 59.99779 * 1 2 3 29 29 H 0.96994 * 119.99929 * 179.97438 * 7 6 4 30 30 H 0.96999 * 119.99323 * 0.02562 * 14 12 2 31 31 H 1.08996 * 111.11875 * 34.26111 * 17 15 14 32 32 H 1.09002 * 111.12396 * 270.11471 * 17 15 14 33 33 H 1.09004 * 110.29967 * 204.73912 * 18 17 15 34 34 H 1.08996 * 110.30763 * 82.57566 * 18 17 15 35 35 H 1.09002 * 109.47043 * 182.06354 * 21 20 19 36 36 H 1.09001 * 109.46918 * 302.06149 * 21 20 19 37 37 H 1.08994 * 109.47330 * 179.59264 * 22 21 20 38 38 H 1.08997 * 109.47119 * 299.59807 * 22 21 20 39 39 H 1.09002 * 109.46448 * 179.75157 * 23 22 21 40 40 H 1.09002 * 109.45545 * 59.77145 * 23 22 21 41 41 H 1.08997 * 109.47906 * 300.25026 * 24 23 22 42 42 H 1.09006 * 109.47653 * 180.23178 * 24 23 22 43 43 H 1.08999 * 109.47239 * 57.94474 * 25 20 19 44 44 H 1.09000 * 109.47197 * 177.94307 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5887 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 3.1465 -2.2872 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1954 -0.9402 3.6508 16 1 2.3022 -2.0093 3.4669 17 6 3.5375 -0.3255 4.1347 18 6 3.4725 -0.6334 5.6520 19 8 2.0882 -0.4820 6.0068 20 6 1.2656 -0.6802 4.8533 21 6 0.3535 -1.8884 5.0618 22 6 -0.5751 -1.6278 6.2500 23 6 -1.4196 -0.3825 5.9733 24 6 -0.5007 0.8248 5.7766 25 6 0.4279 0.5700 4.5871 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 0.7089 1.1612 -3.4844 30 1 1.1489 0.5385 2.5436 31 1 3.5656 0.7488 3.9527 32 1 4.3881 -0.8232 3.6690 33 1 4.0854 0.0757 6.2084 34 1 3.8032 -1.6538 5.8454 35 1 -0.2425 -2.0530 4.1641 36 1 0.9604 -2.7715 5.2619 37 1 -1.2305 -2.4867 6.3942 38 1 0.0206 -1.4704 7.1491 39 1 -2.0842 -0.1994 6.8177 40 1 -2.0122 -0.5386 5.0719 41 1 0.0952 0.9785 6.6763 42 1 -1.1031 1.7125 5.5836 43 1 1.0874 1.4270 4.4508 44 1 -0.1678 0.4231 3.6862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888311850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:23 Heat of formation + Delta-G solvation = -103.362485 kcal Electronic energy + Delta-G solvation = -23625.061437 eV Core-core repulsion = 20348.338004 eV Total energy + Delta-G solvation = -3276.723432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76142 -38.43339 -36.53644 -34.23359 -33.74126 -31.10266 -30.84479 -30.43271 -29.54904 -25.31843 -25.11397 -23.11468 -22.77461 -21.98695 -20.58218 -19.52403 -18.97060 -16.97282 -16.35851 -16.07468 -15.63614 -15.11435 -14.78601 -14.67669 -14.30776 -14.07478 -13.70781 -13.61026 -13.13153 -12.89333 -12.57669 -12.34652 -12.22812 -12.08832 -11.72444 -11.55355 -11.31568 -11.22986 -11.02888 -10.97395 -10.73624 -10.67221 -10.50235 -10.41453 -10.26748 -10.12770 -9.95021 -9.41791 -8.97662 -8.65025 -8.45952 -8.34111 -6.04125 -4.07171 3.31629 3.39241 3.47126 3.62497 3.67510 3.91795 4.46710 4.53299 4.61881 4.67188 4.87271 4.98751 5.10311 5.15063 5.21448 5.29317 5.35843 5.37913 5.50208 5.57948 5.63595 5.71490 5.76909 5.85269 5.94732 5.99619 6.04203 6.11166 6.14813 6.19419 6.24064 6.35942 6.42032 6.59980 6.80666 6.90363 6.98392 7.10996 7.45844 7.74203 7.97615 8.12742 8.42084 9.02319 9.21054 9.58608 11.03545 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.004500 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.496346 B = 6220.702052 C = 6738.249701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.520 3.480 13 O -0.545 6.545 14 N -0.737 5.737 15 C 0.123 3.877 16 H 0.100 0.900 17 C -0.169 4.169 18 C 0.051 3.949 19 O -0.365 6.365 20 C 0.107 3.893 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.112 4.112 25 C -0.127 4.127 26 H 0.031 0.969 27 H 0.011 0.989 28 H 0.094 0.906 29 H 0.260 0.740 30 H 0.399 0.601 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 0.328 17.853 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.310 3.690 13 O -0.420 6.420 14 N -0.394 5.394 15 C 0.016 3.984 16 H 0.118 0.882 17 C -0.208 4.208 18 C -0.026 4.026 19 O -0.284 6.284 20 C 0.067 3.933 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.149 4.149 25 C -0.165 4.165 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.236 0.764 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.984 -0.244 17.805 17.917 hybrid contribution 0.212 -0.053 -1.021 1.044 sum -1.773 -0.297 16.783 16.879 Atomic orbital electron populations 1.21745 0.96532 0.99826 1.00912 1.18882 0.94157 0.96827 0.89341 0.93035 1.21179 1.30869 1.12767 0.88961 0.90742 1.24952 0.95125 0.95075 0.99122 1.69881 1.37168 1.23146 1.23428 0.86407 0.78622 0.79791 0.82501 1.19578 1.21046 1.21058 1.22048 0.78278 0.84192 0.84478 1.90527 1.37856 1.26906 1.86745 1.46478 1.55398 1.32563 1.04927 1.22290 0.91819 0.98828 0.85460 0.88172 1.23682 0.99341 1.02465 0.95359 1.23318 0.83611 1.00870 0.94799 1.88413 1.15898 1.92290 1.31801 1.22001 0.90906 0.95310 0.85096 1.21824 0.97750 0.96783 0.99391 1.21442 0.97654 0.97450 0.98533 1.21544 0.97717 0.95138 1.01385 1.21424 0.97337 0.97560 0.98621 1.21848 0.98360 0.97131 0.99143 0.94965 0.97021 0.88790 0.93026 0.76358 0.90146 0.89572 0.89828 0.92202 0.90699 0.91567 0.92343 0.91395 0.92262 0.92045 0.91370 0.92139 0.91227 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.87 37.16 0.33 -2.66 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.08 8.37 -34.44 -0.29 -14.37 16 5 H 0.07 2.23 6.75 -52.48 -0.35 1.87 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.52 11.63 7.15 -10.99 -0.08 11.55 16 13 O -0.54 -13.96 15.10 5.55 0.08 -13.88 16 14 N -0.74 -12.58 4.76 -51.99 -0.25 -12.83 16 15 C 0.12 1.84 2.76 -66.06 -0.18 1.66 16 16 H 0.10 1.69 7.24 -51.93 -0.38 1.31 16 17 C -0.17 -2.26 6.85 -24.45 -0.17 -2.42 16 18 C 0.05 0.57 7.78 38.19 0.30 0.87 16 19 O -0.36 -4.62 9.59 -35.23 -0.34 -4.96 16 20 C 0.11 1.35 0.77 -90.17 -0.07 1.28 16 21 C -0.12 -1.44 4.79 -26.80 -0.13 -1.57 16 22 C -0.11 -1.19 5.80 -26.72 -0.15 -1.34 16 23 C -0.12 -1.20 5.91 -26.74 -0.16 -1.36 16 24 C -0.11 -1.16 5.80 -26.71 -0.15 -1.32 16 25 C -0.13 -1.49 3.66 -26.80 -0.10 -1.59 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.01 0.21 7.56 -51.93 -0.39 -0.19 16 28 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.40 6.06 5.24 -40.82 -0.21 5.85 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.81 7.98 -51.93 -0.41 0.40 16 44 H 0.08 0.97 6.77 -51.93 -0.35 0.61 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -30.27 337.25 -8.44 -38.71 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.43 Total: 4.85 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.19 Total: -9.30 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.38 Total: -37.22 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.25 Total: -18.84 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.27 -8.44 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888311850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.651 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds