Wall clock time and date at job start Tue Mar 31 2020 05:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47177 * 119.99571 * 2 1 3 5 5 H 1.08001 * 120.00089 * 120.00164 * 4 2 1 6 6 C 1.37882 * 120.00151 * 299.99997 * 4 2 1 7 7 N 1.31511 * 119.99699 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99903 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47331 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47191 * 120.00447 * 8 6 4 11 11 H 1.48504 * 109.47058 * 239.99997 * 8 6 4 12 12 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 13 13 O 1.21283 * 120.00472 * 240.00297 * 12 2 1 14 14 N 1.34777 * 119.99538 * 59.99635 * 12 2 1 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 2 16 16 H 1.09002 * 110.47972 * 34.57650 * 15 14 12 17 17 C 1.54615 * 110.53525 * 271.91264 * 15 14 12 18 18 C 1.54515 * 104.05772 * 241.08771 * 17 15 14 19 19 O 1.44516 * 104.88145 * 23.81985 * 18 17 15 20 20 C 1.44278 * 105.29785 * 320.05596 * 19 18 17 21 21 C 1.52464 * 110.30715 * 158.63925 * 20 19 18 22 22 C 1.53088 * 109.53840 * 63.61330 * 21 20 19 23 23 C 1.52999 * 109.42313 * 59.14749 * 22 21 20 24 24 C 1.53007 * 109.55184 * 299.58741 * 23 22 21 25 25 C 1.52472 * 110.23846 * 281.24451 * 20 19 18 26 26 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 27 27 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 28 28 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 29 29 H 0.97004 * 119.99534 * 179.97438 * 7 6 4 30 30 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 31 31 H 1.08993 * 110.51200 * 359.72982 * 17 15 14 32 32 H 1.08994 * 110.51447 * 122.30885 * 17 15 14 33 33 H 1.08993 * 110.35638 * 142.67083 * 18 17 15 34 34 H 1.09000 * 110.35301 * 264.97381 * 18 17 15 35 35 H 1.08998 * 109.45796 * 183.63231 * 21 20 19 36 36 H 1.09001 * 109.46333 * 303.58923 * 21 20 19 37 37 H 1.08998 * 109.48133 * 299.16778 * 22 21 20 38 38 H 1.08996 * 109.48879 * 179.13947 * 22 21 20 39 39 H 1.08996 * 109.46358 * 179.55891 * 23 22 21 40 40 H 1.09009 * 109.44319 * 59.59966 * 23 22 21 41 41 H 1.08994 * 109.48123 * 300.43345 * 24 23 22 42 42 H 1.09002 * 109.49040 * 180.41258 * 24 23 22 43 43 H 1.09006 * 109.45671 * 56.37906 * 25 20 19 44 44 H 1.09000 * 109.46247 * 176.35032 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9436 0.8304 2.6033 8 14 2.3214 -1.1201 4.0080 9 1 3.1454 -2.2875 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5864 4.8162 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 6 2.2000 -0.9372 -3.6506 16 1 2.2548 -2.0120 -3.4776 17 6 3.5834 -0.3830 -4.0627 18 6 3.3518 0.1890 -5.4792 19 8 1.9360 0.4729 -5.5379 20 6 1.2982 -0.6300 -4.8608 21 6 -0.0942 -0.2268 -4.3883 22 6 -0.9737 0.0921 -5.6000 23 6 -1.0598 -1.1389 -6.5044 24 6 0.3414 -1.5180 -6.9881 25 6 1.2257 -1.8432 -5.7815 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7089 1.1616 3.4844 30 1 1.1493 0.5388 -2.5436 31 1 3.8980 0.4055 -3.3791 32 1 4.3233 -1.1830 -4.0878 33 1 3.9280 1.1037 -5.6176 34 1 3.6222 -0.5486 -6.2348 35 1 -0.5375 -1.0469 -3.8236 36 1 -0.0204 0.6544 -3.7510 37 1 -0.5386 0.9222 -6.1566 38 1 -1.9732 0.3654 -5.2620 39 1 -1.6922 -0.9150 -7.3634 40 1 -1.4882 -1.9708 -5.9451 41 1 0.7732 -0.6837 -7.5409 42 1 0.2781 -2.3906 -7.6382 43 1 2.2282 -2.0993 -6.1244 44 1 0.8013 -2.6871 -5.2375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888311851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:26 Heat of formation + Delta-G solvation = -103.183540 kcal Electronic energy + Delta-G solvation = -23609.947635 eV Core-core repulsion = 20333.231962 eV Total energy + Delta-G solvation = -3276.715673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.80480 -38.40970 -36.45944 -34.07121 -33.70758 -31.35653 -30.78675 -30.24067 -29.60191 -25.48351 -25.09975 -23.08173 -22.55211 -21.99367 -20.48649 -19.45207 -19.22578 -16.87989 -16.24199 -15.98918 -15.58601 -15.39073 -15.03325 -14.62493 -14.31244 -14.01531 -13.72602 -13.41932 -13.12929 -12.82926 -12.57099 -12.36467 -12.18560 -11.96170 -11.66727 -11.54594 -11.41329 -11.18818 -11.05630 -11.01251 -10.70310 -10.65631 -10.57583 -10.38171 -10.24082 -10.09756 -9.93357 -9.59448 -8.94860 -8.61110 -8.41917 -8.31006 -6.01948 -4.04857 3.32817 3.40358 3.48500 3.71392 3.80674 3.88617 4.48286 4.56911 4.58062 4.65268 4.85954 4.97429 5.10988 5.15242 5.21939 5.31416 5.32481 5.40889 5.44417 5.51696 5.60214 5.68247 5.71595 5.86463 5.93177 5.94759 6.05704 6.09833 6.11626 6.15396 6.24296 6.34488 6.38940 6.63769 6.84088 6.89447 6.94439 7.12772 7.49365 7.77216 8.00661 8.16767 8.46800 9.04592 9.25968 9.60771 11.05707 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028075 B = 0.004370 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.077874 B = 6406.298469 C = 6845.108306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.520 3.480 13 O -0.547 6.547 14 N -0.737 5.737 15 C 0.123 3.877 16 H 0.097 0.903 17 C -0.167 4.167 18 C 0.045 3.955 19 O -0.359 6.359 20 C 0.101 3.899 21 C -0.105 4.105 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.131 4.131 26 H 0.093 0.907 27 H 0.012 0.988 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.398 0.602 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 -0.811 -18.974 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.310 3.690 13 O -0.422 6.422 14 N -0.392 5.392 15 C 0.017 3.983 16 H 0.115 0.885 17 C -0.206 4.206 18 C -0.032 4.032 19 O -0.278 6.278 20 C 0.061 3.939 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.150 4.150 25 C -0.169 4.169 26 H 0.111 0.889 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.235 0.765 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.751 -1.244 -18.816 18.938 hybrid contribution 0.283 -0.180 0.897 0.957 sum -1.468 -1.424 -17.919 18.035 Atomic orbital electron populations 1.21732 0.96538 0.99770 1.00912 1.18875 0.94170 0.96808 0.89392 0.93086 1.21185 1.30828 1.12746 0.88991 0.90769 1.24952 0.95155 0.95074 0.99105 1.69884 1.37219 1.23118 1.23387 0.86414 0.78614 0.79787 0.82537 1.19592 1.21070 1.21066 1.22012 0.78316 0.84193 0.84498 1.90521 1.37968 1.26968 1.86777 1.46484 1.55225 1.32556 1.04955 1.22046 0.91972 0.98644 0.85647 0.88543 1.23428 0.98300 1.01846 0.97043 1.23399 0.83164 1.00558 0.96072 1.89144 1.17646 1.43167 1.77870 1.22206 0.93727 0.87484 0.90513 1.21453 0.92512 1.02474 0.97814 1.21498 0.99368 0.98182 0.96317 1.21544 0.96755 0.98228 0.99203 1.21443 0.95325 1.01216 0.97044 1.21865 1.00667 0.97277 0.97051 0.88875 0.96943 0.95018 0.93052 0.76549 0.89993 0.90273 0.89300 0.92488 0.90231 0.90882 0.91322 0.91947 0.92210 0.92111 0.91426 0.92245 0.91465 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.87 37.16 0.33 -2.68 16 2 C 0.03 0.71 2.64 -92.93 -0.25 0.47 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.20 8.37 -34.44 -0.29 -14.49 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.23 11.32 55.43 0.63 -24.60 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.52 11.78 7.15 -10.99 -0.08 11.70 16 13 O -0.55 -14.13 15.14 5.55 0.08 -14.04 16 14 N -0.74 -12.89 4.34 -52.46 -0.23 -13.12 16 15 C 0.12 1.86 2.83 -66.55 -0.19 1.67 16 16 H 0.10 1.59 7.32 -51.93 -0.38 1.21 16 17 C -0.17 -2.28 6.88 -25.09 -0.17 -2.45 16 18 C 0.05 0.51 7.21 37.95 0.27 0.78 16 19 O -0.36 -4.62 10.16 -35.23 -0.36 -4.98 16 20 C 0.10 1.25 0.65 -90.63 -0.06 1.19 16 21 C -0.10 -1.27 4.25 -26.96 -0.11 -1.39 16 22 C -0.12 -1.21 5.82 -26.69 -0.16 -1.37 16 23 C -0.12 -1.12 5.91 -26.73 -0.16 -1.28 16 24 C -0.11 -1.07 5.82 -26.68 -0.16 -1.23 16 25 C -0.13 -1.40 4.64 -26.96 -0.12 -1.53 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.40 6.36 5.81 -40.82 -0.24 6.12 16 31 H 0.08 1.24 7.97 -51.93 -0.41 0.83 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.56 7.27 -51.93 -0.38 0.18 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.93 6.16 -51.93 -0.32 0.61 16 37 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 41 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.68 6.98 -51.93 -0.36 0.32 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -30.65 335.47 -8.40 -39.05 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.33 Total: 4.86 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.23 Total: -9.08 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.40 Total: -37.72 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.27 Total: -19.02 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.65 -8.40 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888311851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.130 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds