Wall clock time and date at job start Tue Mar 31 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 O 1.21283 * 120.00011 * 120.00264 * 12 2 1 14 14 N 1.34775 * 120.00072 * 299.99711 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.47816 * 34.29933 * 15 14 12 17 17 C 1.54609 * 110.53574 * 271.63523 * 15 14 12 18 18 C 1.54509 * 104.06177 * 241.08786 * 17 15 14 19 19 O 1.44506 * 104.88047 * 23.81803 * 18 17 15 20 20 C 1.44283 * 105.30073 * 320.06067 * 19 18 17 21 21 C 1.52455 * 110.31100 * 158.64100 * 20 19 18 22 22 C 1.53098 * 109.54206 * 63.61183 * 21 20 19 23 23 C 1.53000 * 109.41929 * 59.14830 * 22 21 20 24 24 C 1.53003 * 109.55139 * 299.58907 * 23 22 21 25 25 C 1.52475 * 110.23306 * 281.24426 * 20 19 18 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 31 31 H 1.09008 * 110.50931 * 359.73082 * 17 15 14 32 32 H 1.08999 * 110.51380 * 122.30295 * 17 15 14 33 33 H 1.08996 * 110.35873 * 142.67135 * 18 17 15 34 34 H 1.09002 * 110.35270 * 264.97350 * 18 17 15 35 35 H 1.09008 * 109.45905 * 183.62966 * 21 20 19 36 36 H 1.08998 * 109.46128 * 303.58636 * 21 20 19 37 37 H 1.09006 * 109.47384 * 299.16551 * 22 21 20 38 38 H 1.08992 * 109.48895 * 179.13953 * 22 21 20 39 39 H 1.08995 * 109.45836 * 179.56201 * 23 22 21 40 40 H 1.08999 * 109.44353 * 59.60056 * 23 22 21 41 41 H 1.09001 * 109.47979 * 300.43831 * 24 23 22 42 42 H 1.09008 * 109.48931 * 180.41335 * 24 23 22 43 43 H 1.09002 * 109.45710 * 56.37908 * 25 20 19 44 44 H 1.09004 * 109.45466 * 176.34588 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1953 -0.9400 3.6509 16 1 3.1900 -1.3496 3.4752 17 6 1.2143 -2.0590 4.0702 18 6 0.7575 -1.6462 5.4873 19 8 0.9608 -0.2165 5.5409 20 6 2.2103 0.0163 4.8582 21 6 2.2914 1.4620 4.3811 22 6 2.2879 2.4012 5.5901 23 6 3.4811 2.0756 6.4907 24 6 3.3744 0.6295 6.9791 25 6 3.3822 -0.3161 5.7753 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7173 1.1669 -3.4844 30 1 1.1487 0.5387 2.5435 31 1 0.3633 -2.0955 3.3900 32 1 1.7228 -3.0228 4.0961 33 1 -0.2963 -1.8850 5.6306 34 1 1.3661 -2.1443 6.2420 35 1 3.2101 1.6057 3.8123 36 1 1.4333 1.6837 3.7465 37 1 1.3625 2.2686 6.1507 38 1 2.3612 3.4337 5.2487 39 1 3.4837 2.7491 7.3477 40 1 4.4058 2.2012 5.9274 41 1 2.4462 0.5015 7.5359 42 1 4.2211 0.4009 7.6264 43 1 3.2917 -1.3457 6.1215 44 1 4.3170 -0.1982 5.2271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888311853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:31 Heat of formation + Delta-G solvation = -103.174887 kcal Electronic energy + Delta-G solvation = -23579.545253 eV Core-core repulsion = 20302.829955 eV Total energy + Delta-G solvation = -3276.715298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80467 -38.41079 -36.45958 -34.07153 -33.70291 -31.34680 -30.80443 -30.24363 -29.59447 -25.48500 -25.10530 -23.06254 -22.52749 -22.02249 -20.51378 -19.44898 -19.20630 -16.86816 -16.29114 -15.98269 -15.55299 -15.35776 -15.06869 -14.61948 -14.26729 -14.04145 -13.82403 -13.41627 -13.02512 -12.81935 -12.56994 -12.35445 -12.25596 -11.99932 -11.67408 -11.46575 -11.41535 -11.19781 -11.07037 -11.00741 -10.70383 -10.65725 -10.57179 -10.38337 -10.25426 -10.09960 -9.93141 -9.59471 -8.95780 -8.59474 -8.43980 -8.29903 -6.01659 -4.04733 3.34457 3.40166 3.46866 3.71630 3.80035 3.88903 4.48328 4.56717 4.57993 4.65087 4.85977 4.97284 5.11146 5.15127 5.21933 5.31536 5.32396 5.40620 5.43990 5.51433 5.60154 5.68334 5.71370 5.86388 5.93018 5.94453 6.05449 6.09447 6.11802 6.15097 6.24396 6.34655 6.38692 6.64069 6.84355 6.89577 6.94654 7.12952 7.49311 7.77265 8.00701 8.16772 8.46858 9.04277 9.25984 9.60856 11.05969 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027760 B = 0.004292 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.390710 B = 6522.607210 C = 6788.547464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.547 6.547 14 N -0.737 5.737 15 C 0.123 3.877 16 H 0.097 0.903 17 C -0.167 4.167 18 C 0.045 3.955 19 O -0.359 6.359 20 C 0.101 3.899 21 C -0.105 4.105 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.131 4.131 26 H 0.093 0.907 27 H 0.030 0.970 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.398 0.602 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 1.439 18.954 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.310 3.690 13 O -0.422 6.422 14 N -0.392 5.392 15 C 0.017 3.983 16 H 0.115 0.885 17 C -0.206 4.206 18 C -0.032 4.032 19 O -0.278 6.278 20 C 0.061 3.939 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.150 4.150 25 C -0.169 4.169 26 H 0.111 0.889 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.235 0.765 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.373 0.995 18.793 18.869 hybrid contribution 0.068 -0.350 -0.889 0.958 sum 1.441 0.644 17.904 17.973 Atomic orbital electron populations 1.21736 0.96572 0.99751 1.00906 1.18870 0.94114 0.96821 0.89367 0.93045 1.21139 1.30989 1.12684 0.89008 0.90831 1.24947 0.95166 0.95048 0.99089 1.69871 1.37226 1.23029 1.23494 0.86463 0.79457 0.79226 0.82126 1.20707 1.21304 1.19776 1.22016 0.78271 0.84239 0.84503 1.90521 1.38060 1.26885 1.86781 1.46484 1.55123 1.32657 1.04953 1.22044 0.98742 0.91877 0.85648 0.88537 1.23426 1.00645 0.99518 0.97006 1.23396 1.01421 0.82278 0.96088 1.89143 1.38741 1.22296 1.77637 1.22204 0.85309 0.95936 0.90485 1.21457 1.03106 0.91902 0.97846 1.21500 0.98878 0.98635 0.96350 1.21542 0.98618 0.96358 0.99214 1.21443 1.01889 0.94637 0.97062 1.21865 0.98015 0.99896 0.97089 0.88874 0.95077 0.96947 0.92992 0.76548 0.89968 0.90298 0.89307 0.92498 0.90238 0.90874 0.91310 0.91941 0.92206 0.92107 0.91424 0.92241 0.91458 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.73 2.64 -92.92 -0.24 0.49 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16 7 N -0.90 -25.23 11.33 55.43 0.63 -24.61 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 11.78 7.15 -10.98 -0.08 11.70 16 13 O -0.55 -14.13 15.14 5.56 0.08 -14.04 16 14 N -0.74 -12.89 4.34 -52.47 -0.23 -13.12 16 15 C 0.12 1.86 2.83 -66.55 -0.19 1.67 16 16 H 0.10 1.59 7.32 -51.93 -0.38 1.21 16 17 C -0.17 -2.29 6.88 -25.09 -0.17 -2.46 16 18 C 0.05 0.51 7.21 37.95 0.27 0.79 16 19 O -0.36 -4.63 10.16 -35.23 -0.36 -4.98 16 20 C 0.10 1.25 0.65 -90.63 -0.06 1.19 16 21 C -0.11 -1.27 4.25 -26.96 -0.11 -1.39 16 22 C -0.12 -1.20 5.82 -26.68 -0.16 -1.36 16 23 C -0.12 -1.12 5.91 -26.73 -0.16 -1.27 16 24 C -0.11 -1.07 5.82 -26.69 -0.16 -1.22 16 25 C -0.13 -1.40 4.64 -26.96 -0.12 -1.52 16 26 H 0.09 2.37 6.08 -51.93 -0.32 2.06 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.40 6.36 5.81 -40.82 -0.24 6.12 16 31 H 0.08 1.26 7.97 -51.92 -0.41 0.84 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.56 7.27 -51.93 -0.38 0.18 16 35 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.07 0.92 6.16 -51.93 -0.32 0.60 16 37 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 42 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.07 0.68 6.98 -51.93 -0.36 0.32 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -30.64 335.48 -8.40 -39.04 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.33 Total: 4.88 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.23 Total: -9.10 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.40 Total: -37.73 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.27 Total: -19.03 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.64 -8.40 -39.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888311853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.137 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds