Wall clock time and date at job start Tue Mar 31 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47016 * 2 1 4 4 C 1.37103 * 120.00335 * 264.78761 * 3 2 1 5 5 H 1.08002 * 120.00054 * 146.16391 * 4 3 2 6 6 C 1.38944 * 119.99797 * 326.16672 * 4 3 2 7 7 N 1.31413 * 120.00023 * 337.71465 * 6 4 3 8 8 Si 1.86795 * 120.00077 * 157.71647 * 6 4 3 9 9 H 1.48497 * 109.47282 * 89.99367 * 8 6 4 10 10 H 1.48497 * 109.47630 * 209.99952 * 8 6 4 11 11 H 1.48508 * 109.47149 * 329.99722 * 8 6 4 12 12 C 1.34782 * 119.99609 * 84.78489 * 3 2 1 13 13 O 1.21290 * 119.99969 * 180.02562 * 12 3 2 14 14 C 1.50693 * 120.00067 * 0.27761 * 12 3 2 15 15 C 1.53000 * 109.47125 * 179.72222 * 14 12 3 16 16 H 1.08995 * 109.43141 * 55.00279 * 15 14 12 17 17 C 1.53076 * 109.43168 * 174.90777 * 15 14 12 18 18 C 1.53359 * 109.07852 * 179.48023 * 17 15 14 19 19 C 1.52849 * 108.74124 * 305.14976 * 18 17 15 20 20 C 1.53352 * 113.54528 * 282.25621 * 19 18 17 21 21 C 1.53853 * 86.95658 * 220.09333 * 20 19 18 22 22 C 1.53331 * 113.59178 * 184.27864 * 19 18 17 23 23 C 1.52750 * 112.68812 * 53.21747 * 19 18 17 24 24 O 1.42862 * 109.43591 * 295.09277 * 15 14 12 25 25 H 1.08996 * 109.47773 * 59.99976 * 1 2 3 26 26 H 1.09005 * 109.47183 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47031 * 299.98982 * 1 2 3 28 28 H 1.09006 * 109.46858 * 240.00496 * 2 1 3 29 29 H 1.09002 * 109.47515 * 120.00390 * 2 1 3 30 30 H 0.97006 * 119.99961 * 180.02562 * 7 6 4 31 31 H 1.09007 * 109.47370 * 299.72463 * 14 12 3 32 32 H 1.09000 * 109.47365 * 59.72125 * 14 12 3 33 33 H 1.08996 * 109.53784 * 299.36172 * 17 15 14 34 34 H 1.09007 * 109.53806 * 59.52649 * 17 15 14 35 35 H 1.08998 * 109.59057 * 64.92571 * 18 17 15 36 36 H 1.08996 * 109.59290 * 185.22306 * 18 17 15 37 37 H 1.09007 * 113.63317 * 334.60961 * 20 19 18 38 38 H 1.08996 * 113.63420 * 105.57245 * 20 19 18 39 39 H 1.08999 * 113.59751 * 270.54165 * 21 20 19 40 40 H 1.08996 * 113.60104 * 139.68004 * 21 20 19 41 41 H 1.08998 * 113.63618 * 254.38238 * 22 19 18 42 42 H 1.09004 * 113.63517 * 25.34941 * 22 19 18 43 43 H 1.08999 * 109.53232 * 66.27218 * 23 19 18 44 44 H 1.09005 * 109.52629 * 186.40696 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3485 1.9917 -1.1824 5 1 2.1806 3.0511 -1.3085 6 6 2.8992 1.2473 -2.2184 7 7 3.5033 0.1091 -1.9607 8 14 2.7808 1.8646 -3.9774 9 1 3.9632 2.7080 -4.2867 10 1 2.7417 0.7070 -4.9067 11 1 1.5431 2.6696 -4.1373 12 6 2.1429 2.0519 1.1625 13 8 2.5467 3.1956 1.1625 14 6 1.7858 1.3789 2.4626 15 6 2.0228 2.3496 3.6213 16 1 1.4685 3.2707 3.4418 17 6 1.5412 1.7116 4.9268 18 6 1.7944 2.6856 6.0839 19 6 3.2726 3.0745 6.0840 20 6 4.1894 1.9974 6.6765 21 6 4.9681 3.1439 7.3445 22 6 3.6718 3.9687 7.2639 23 6 3.7434 3.6011 4.7297 24 8 3.4173 2.6448 3.7164 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8881 -0.4104 -2.6840 31 1 0.7362 1.0852 2.4435 32 1 2.4082 0.4942 2.5967 33 1 0.4746 1.4984 4.8565 34 1 2.0875 0.7849 5.1028 35 1 1.1818 3.5775 5.9516 36 1 1.5406 2.2048 7.0286 37 1 3.6880 1.3384 7.3854 38 1 4.7667 1.4550 5.9278 39 1 5.7760 3.5393 6.7289 40 1 5.2816 2.9221 8.3645 41 1 3.8333 5.0106 6.9875 42 1 3.0271 3.8557 8.1356 43 1 3.2457 4.5463 4.5131 44 1 4.8223 3.7545 4.7535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888555677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:02 Heat of formation + Delta-G solvation = -68.203833 kcal Electronic energy + Delta-G solvation = -23290.509965 eV Core-core repulsion = 20015.311126 eV Total energy + Delta-G solvation = -3275.198839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41861 -38.51950 -36.85360 -34.78973 -33.01918 -31.98250 -30.58139 -29.35031 -27.23389 -25.72444 -25.08011 -24.23817 -22.59709 -21.94793 -20.67514 -18.65538 -18.38014 -16.68165 -16.12939 -15.96682 -15.52501 -15.27512 -14.89723 -14.47301 -13.94912 -13.86470 -13.70593 -13.41994 -12.93045 -12.79544 -12.53065 -12.34260 -12.20364 -11.87269 -11.77675 -11.54672 -11.33705 -11.04295 -11.00348 -10.94157 -10.81933 -10.70501 -10.33160 -10.28828 -10.21170 -10.01744 -9.89011 -9.82987 -8.98601 -8.83806 -8.20618 -7.36319 -6.22858 -3.82825 3.22745 3.30937 3.36576 4.01239 4.14837 4.25828 4.52805 4.56712 4.65211 4.80089 4.84813 5.09669 5.11615 5.21573 5.29842 5.36105 5.60182 5.61086 5.63968 5.71154 5.77676 5.78224 5.85677 5.91550 5.92334 5.98221 6.01810 6.06430 6.10203 6.17680 6.29031 6.32790 6.36139 6.41097 6.50075 6.56263 6.60442 6.96095 7.35710 7.68914 7.74030 8.35883 8.64067 9.32204 9.55167 10.17175 10.81126 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029910 B = 0.004102 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.908779 B = 6823.718322 C = 7230.203595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.447 5.447 4 C -0.303 4.303 5 H 0.090 0.910 6 C 0.033 3.967 7 N -0.872 5.872 8 Si 0.915 3.085 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.463 3.537 13 O -0.572 6.572 14 C -0.129 4.129 15 C 0.112 3.888 16 H 0.059 0.941 17 C -0.150 4.150 18 C -0.102 4.102 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.130 4.130 23 C 0.089 3.911 24 O -0.353 6.353 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.112 0.888 29 H 0.046 0.954 30 H 0.266 0.734 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 0.244 15.889 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.167 5.167 4 C -0.431 4.431 5 H 0.107 0.893 6 C -0.170 4.170 7 N -0.511 5.511 8 Si 0.741 3.259 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.251 3.749 13 O -0.455 6.455 14 C -0.169 4.169 15 C 0.054 3.946 16 H 0.077 0.923 17 C -0.187 4.187 18 C -0.140 4.140 19 C -0.118 4.118 20 C -0.164 4.164 21 C -0.180 4.180 22 C -0.168 4.168 23 C 0.011 3.989 24 O -0.271 6.271 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.130 0.870 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.934 0.573 15.630 15.913 hybrid contribution -0.247 0.119 -0.640 0.697 sum -3.181 0.693 14.990 15.339 Atomic orbital electron populations 1.22216 0.98469 1.00175 1.01355 1.21562 0.91497 0.85759 1.04050 1.43519 1.56426 1.11797 1.04956 1.19414 1.39420 0.95320 0.88932 0.89253 1.25288 0.94763 0.96586 1.00357 1.69934 1.33066 1.15407 1.32648 0.86132 0.78953 0.78280 0.82508 1.20401 1.20908 1.19532 1.20149 0.82163 0.87951 0.84633 1.90513 1.49534 1.18762 1.86693 1.21707 1.02186 0.99301 0.93753 1.21698 0.83194 0.97270 0.92433 0.92265 1.22258 1.01437 0.99524 0.95513 1.21501 0.94929 0.99176 0.98385 1.22277 0.95652 0.97810 0.96025 1.22845 0.97872 0.96080 0.99570 1.22864 0.96865 0.97620 1.00668 1.22864 0.97522 0.98513 0.97880 1.22198 1.00266 0.91603 0.84805 1.88097 1.23539 1.61168 1.54336 0.92507 0.93217 0.94060 0.86984 0.93534 0.92426 0.89376 0.89565 0.91187 0.91121 0.91933 0.91797 0.90473 0.90890 0.90147 0.91781 0.91490 0.90206 0.93241 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 10.15 37.16 0.38 -2.60 16 2 C 0.10 2.12 5.44 -4.04 -0.02 2.10 16 3 N -0.45 -11.65 2.56 -114.81 -0.29 -11.94 16 4 C -0.30 -8.65 8.98 -14.93 -0.13 -8.78 16 5 H 0.09 2.67 7.70 -52.49 -0.40 2.27 16 6 C 0.03 0.90 4.92 -17.47 -0.09 0.81 16 7 N -0.87 -24.07 11.33 55.50 0.63 -23.44 16 8 Si 0.91 21.05 29.61 -169.99 -5.03 16.02 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 12 C 0.46 11.70 7.47 -10.99 -0.08 11.62 16 13 O -0.57 -16.50 15.24 -8.99 -0.14 -16.64 16 14 C -0.13 -2.47 4.01 -27.89 -0.11 -2.59 16 15 C 0.11 1.97 2.13 -26.69 -0.06 1.91 16 16 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 17 C -0.15 -1.96 5.36 -26.51 -0.14 -2.11 16 18 C -0.10 -1.18 5.20 -26.62 -0.14 -1.32 16 19 C -0.12 -1.41 0.85 -154.36 -0.13 -1.54 16 20 C -0.13 -1.42 7.12 -26.10 -0.19 -1.60 16 21 C -0.14 -1.39 7.73 -25.84 -0.20 -1.59 16 22 C -0.13 -1.28 7.23 -26.11 -0.19 -1.47 16 23 C 0.09 1.35 5.93 37.03 0.22 1.57 16 24 O -0.35 -6.87 9.64 -49.77 -0.48 -7.35 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.69 6.62 -51.93 -0.34 0.35 16 28 H 0.11 2.76 5.34 -51.93 -0.28 2.48 16 29 H 0.05 0.95 6.65 -51.93 -0.35 0.60 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.09 1.45 6.56 -51.92 -0.34 1.11 16 32 H 0.09 1.62 7.41 -51.93 -0.38 1.23 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 37 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 38 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.08 0.79 7.64 -51.93 -0.40 0.40 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 42 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 1.27 7.34 -51.93 -0.38 0.89 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -32.18 341.06 -8.53 -40.72 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.47 Total: 3.08 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.88 Total: -5.59 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.34 Total: -35.38 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.62 Total: -23.98 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.18 -8.53 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.486 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds