Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46841 * 2 1 4 4 C 1.37094 * 120.00153 * 263.55347 * 3 2 1 5 5 H 1.07999 * 120.00810 * 188.39601 * 4 3 2 6 6 C 1.38955 * 119.99905 * 8.38894 * 4 3 2 7 7 N 1.31409 * 119.99783 * 25.16768 * 6 4 3 8 8 Si 1.86798 * 120.00469 * 205.16565 * 6 4 3 9 9 H 1.48499 * 109.46996 * 84.98657 * 8 6 4 10 10 H 1.48497 * 109.47439 * 204.99021 * 8 6 4 11 11 H 1.48506 * 109.46894 * 324.99275 * 8 6 4 12 12 C 1.34780 * 120.00172 * 83.55691 * 3 2 1 13 13 O 1.21282 * 119.99882 * 179.97438 * 12 3 2 14 14 C 1.50703 * 119.99708 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.46822 * 180.02562 * 14 12 3 16 16 H 1.09001 * 109.43353 * 304.90275 * 15 14 12 17 17 C 1.53081 * 109.43239 * 185.00160 * 15 14 12 18 18 C 1.53347 * 109.07803 * 180.56414 * 17 15 14 19 19 C 1.52849 * 108.74190 * 54.85108 * 18 17 15 20 20 C 1.53356 * 113.54614 * 77.72199 * 19 18 17 21 21 C 1.53848 * 86.95571 * 89.52418 * 20 19 18 22 22 C 1.53328 * 113.59393 * 175.69897 * 19 18 17 23 23 C 1.52750 * 112.68456 * 306.77383 * 19 18 17 24 24 O 1.42866 * 109.39529 * 64.72177 * 15 14 12 25 25 H 1.09008 * 109.46846 * 60.00232 * 1 2 3 26 26 H 1.09004 * 109.47022 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47083 * 300.00117 * 1 2 3 28 28 H 1.09001 * 109.47303 * 239.99550 * 2 1 3 29 29 H 1.09008 * 109.46846 * 119.99768 * 2 1 3 30 30 H 0.96998 * 119.99993 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47548 * 60.00036 * 14 12 3 32 32 H 1.09001 * 109.46566 * 299.99633 * 14 12 3 33 33 H 1.08994 * 109.53910 * 60.68528 * 17 15 14 34 34 H 1.09004 * 109.53357 * 300.43764 * 17 15 14 35 35 H 1.09000 * 109.59718 * 295.07472 * 18 17 15 36 36 H 1.09003 * 109.71326 * 174.69889 * 18 17 15 37 37 H 1.09007 * 113.63339 * 204.03879 * 20 19 18 38 38 H 1.09004 * 113.63704 * 335.00026 * 20 19 18 39 39 H 1.09003 * 113.60020 * 270.53974 * 21 20 19 40 40 H 1.08999 * 113.60727 * 139.68052 * 21 20 19 41 41 H 1.09004 * 113.63308 * 25.03914 * 22 19 18 42 42 H 1.09002 * 113.63701 * 155.91335 * 22 19 18 43 43 H 1.09002 * 109.53083 * 173.53230 * 23 19 18 44 44 H 1.08998 * 109.53014 * 293.67139 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9831 -1.1797 5 1 2.8580 2.9478 -1.1695 6 6 2.1068 1.3519 -2.3888 7 7 1.1284 0.4788 -2.4731 8 14 3.1404 1.7446 -3.8944 9 1 4.3646 0.9041 -3.8873 10 1 2.3538 1.4631 -5.1221 11 1 3.5247 3.1789 -3.8707 12 6 2.1194 2.0603 1.1598 13 8 2.5241 3.2036 1.1598 14 6 1.7296 1.3988 2.4566 15 6 1.9375 2.3799 3.6121 16 1 2.9661 2.7404 3.6012 17 6 1.6610 1.6694 4.9395 18 6 1.8579 2.6633 6.0906 19 6 0.9770 3.8868 5.8390 20 6 -0.5014 3.6569 6.1754 21 6 -0.1671 4.1350 7.5990 22 6 1.0085 4.9107 6.9799 23 6 1.2016 4.5006 4.4584 24 8 1.0459 3.4860 3.4616 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.9427 0.0385 -3.3172 31 1 2.3480 0.5152 2.6141 32 1 0.6807 1.1054 2.4138 33 1 2.3517 0.8344 5.0568 34 1 0.6356 1.2998 4.9485 35 1 2.9033 2.9685 6.1353 36 1 1.5731 2.1955 7.0331 37 1 -1.1799 4.3209 5.6396 38 1 -0.8035 2.6108 6.1253 39 1 0.1437 3.3319 8.2673 40 1 -0.9325 4.7771 8.0349 41 1 1.9200 4.8723 7.5765 42 1 0.7498 5.9222 6.6666 43 1 0.4725 5.2928 4.2888 44 1 2.2085 4.9142 4.4030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888555678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = -59.843906 kcal Electronic energy + Delta-G solvation = -23345.445699 eV Core-core repulsion = 20070.609373 eV Total energy + Delta-G solvation = -3274.836325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43367 -38.54413 -36.90441 -34.87666 -32.93093 -31.76624 -30.51127 -29.27493 -27.53826 -25.75871 -25.04086 -23.81652 -22.60188 -21.98577 -20.82974 -18.65682 -18.22021 -16.70841 -16.26642 -15.97280 -15.56889 -15.42090 -14.68919 -14.30979 -14.00854 -13.91451 -13.78896 -13.08935 -12.98774 -12.63716 -12.55685 -12.43250 -12.11113 -11.88903 -11.51849 -11.44228 -11.13905 -11.08814 -11.01102 -10.90778 -10.80701 -10.64486 -10.35295 -10.25182 -10.14938 -10.04621 -9.79448 -9.75048 -8.87711 -8.78514 -8.17976 -7.63530 -6.25657 -3.66169 3.22126 3.31294 3.36358 4.00004 4.13844 4.21728 4.52193 4.55520 4.65120 4.74926 4.85978 5.08062 5.16684 5.21222 5.30644 5.35172 5.54491 5.59087 5.67465 5.72483 5.77242 5.78729 5.84589 5.90152 5.95172 5.99678 6.01515 6.08518 6.15652 6.20560 6.32909 6.37746 6.47121 6.53446 6.69382 6.73691 6.84719 7.35136 7.56592 7.75387 7.83011 8.21509 8.63632 9.31391 9.57945 10.15436 10.75567 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035160 B = 0.003970 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.176948 B = 7051.537159 C = 7369.695076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.122 3.878 3 N -0.449 5.449 4 C -0.303 4.303 5 H 0.102 0.898 6 C 0.028 3.972 7 N -0.870 5.870 8 Si 0.916 3.084 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.271 1.271 12 C 0.449 3.551 13 O -0.582 6.582 14 C -0.126 4.126 15 C 0.113 3.887 16 H 0.059 0.941 17 C -0.150 4.150 18 C -0.094 4.094 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.142 4.142 22 C -0.130 4.130 23 C 0.080 3.920 24 O -0.355 6.355 25 H 0.091 0.909 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.100 0.900 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.692 0.268 16.585 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.001 4.001 3 N -0.168 5.168 4 C -0.430 4.430 5 H 0.120 0.880 6 C -0.174 4.174 7 N -0.510 5.510 8 Si 0.743 3.257 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.238 3.762 13 O -0.466 6.466 14 C -0.166 4.166 15 C 0.055 3.945 16 H 0.077 0.923 17 C -0.187 4.187 18 C -0.131 4.131 19 C -0.118 4.118 20 C -0.161 4.161 21 C -0.179 4.179 22 C -0.168 4.168 23 C 0.003 3.997 24 O -0.273 6.273 25 H 0.110 0.890 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.118 0.882 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.710 0.718 16.253 16.359 hybrid contribution 0.480 -0.088 -0.564 0.745 sum -1.231 0.630 15.690 15.750 Atomic orbital electron populations 1.22129 0.96841 0.99601 1.02104 1.21406 0.94421 0.83866 1.00448 1.43824 1.56221 1.11231 1.05568 1.19705 1.35689 1.05345 0.82298 0.87985 1.25142 0.96141 0.97406 0.98743 1.70118 1.25197 1.29224 1.26456 0.86097 0.80005 0.79080 0.80487 1.20536 1.21249 1.19605 1.19806 0.84675 0.86866 0.84892 1.90505 1.51175 1.18150 1.86797 1.21651 1.03250 0.97864 0.93827 1.21679 0.93788 0.86773 0.92259 0.92270 1.22260 1.02699 0.98440 0.95349 1.21331 0.99020 0.94514 0.98261 1.22246 0.96730 0.96665 0.96157 1.22843 0.95674 1.01703 0.95835 1.22852 0.98327 0.99894 0.96834 1.22850 0.98767 0.98069 0.97091 1.22409 1.00915 0.90603 0.85807 1.88081 1.59040 1.30458 1.49718 0.89020 0.94574 0.95663 0.88183 0.95255 0.92485 0.89596 0.89528 0.91018 0.91112 0.91699 0.91652 0.90040 0.91471 0.90465 0.91767 0.91564 0.90049 0.89488 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.64 37.16 0.36 -2.83 16 2 C 0.12 2.77 5.07 -4.04 -0.02 2.75 16 3 N -0.45 -11.70 2.64 -114.81 -0.30 -12.00 16 4 C -0.30 -8.59 9.43 -14.93 -0.14 -8.73 16 5 H 0.10 3.08 7.31 -52.49 -0.38 2.70 16 6 C 0.03 0.73 4.90 -17.47 -0.09 0.65 16 7 N -0.87 -22.69 8.64 55.50 0.48 -22.21 16 8 Si 0.92 20.89 29.62 -169.99 -5.04 15.85 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.45 11.30 7.45 -10.98 -0.08 11.22 16 13 O -0.58 -16.64 15.00 -9.19 -0.14 -16.78 16 14 C -0.13 -2.41 4.02 -27.88 -0.11 -2.52 16 15 C 0.11 1.98 2.13 -26.69 -0.06 1.92 16 16 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 17 C -0.15 -1.95 5.36 -26.51 -0.14 -2.10 16 18 C -0.09 -1.07 5.11 -26.63 -0.14 -1.21 16 19 C -0.12 -1.39 0.86 -154.36 -0.13 -1.53 16 20 C -0.12 -1.36 7.13 -26.11 -0.19 -1.55 16 21 C -0.14 -1.29 7.73 -25.85 -0.20 -1.49 16 22 C -0.13 -1.26 7.23 -26.12 -0.19 -1.45 16 23 C 0.08 1.20 6.02 37.03 0.22 1.43 16 24 O -0.35 -6.83 9.63 -49.97 -0.48 -7.31 16 25 H 0.09 2.27 6.38 -51.92 -0.33 1.93 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.02 0.51 6.45 -51.93 -0.33 0.17 16 28 H 0.10 2.44 5.83 -51.93 -0.30 2.14 16 29 H 0.03 0.57 6.71 -51.92 -0.35 0.22 16 30 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.09 1.43 7.42 -51.93 -0.39 1.04 16 32 H 0.09 1.62 6.41 -51.93 -0.33 1.29 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.92 7.66 -51.93 -0.40 0.52 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.65 7.34 -51.93 -0.38 0.26 16 37 H 0.08 0.92 8.03 -51.92 -0.42 0.50 16 38 H 0.07 0.76 7.62 -51.93 -0.40 0.36 16 39 H 0.08 0.65 7.64 -51.93 -0.40 0.26 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 42 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -30.98 334.92 -8.66 -39.64 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.33 Total: 3.20 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.90 Total: -5.43 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.18 Total: -34.22 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.62 Total: -24.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.98 -8.66 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.204 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds