Wall clock time and date at job start Tue Mar 31 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46571 * 2 1 4 4 C 1.50693 * 109.47147 * 119.99600 * 2 1 3 5 5 H 1.08001 * 120.00322 * 114.35999 * 4 2 1 6 6 C 1.37875 * 120.00267 * 294.36331 * 4 2 1 7 7 N 1.31513 * 120.00363 * 156.52728 * 6 4 2 8 8 Si 1.86805 * 120.00006 * 336.79815 * 6 4 2 9 9 H 1.48501 * 109.47300 * 179.72713 * 8 6 4 10 10 H 1.48502 * 109.47135 * 299.72898 * 8 6 4 11 11 H 1.48503 * 109.46966 * 59.72485 * 8 6 4 12 12 C 1.50695 * 109.47297 * 240.00164 * 2 1 3 13 13 O 1.21288 * 119.99944 * 240.00005 * 12 2 1 14 14 N 1.34781 * 120.00328 * 59.99447 * 12 2 1 15 15 C 1.46498 * 119.99859 * 180.02562 * 14 12 2 16 16 C 1.54038 * 113.57139 * 254.27461 * 15 14 12 17 17 C 1.52530 * 86.58097 * 221.03237 * 16 15 14 18 18 C 1.52377 * 88.58483 * 24.58128 * 17 16 15 19 19 C 1.53663 * 116.13774 * 265.92267 * 17 16 15 20 20 O 1.44637 * 103.36812 * 195.63730 * 19 17 16 21 21 C 1.43854 * 107.22703 * 38.46718 * 20 19 17 22 22 C 1.52998 * 109.88089 * 93.36573 * 21 20 19 23 23 C 1.53007 * 109.88032 * 214.36970 * 21 20 19 24 24 C 1.53483 * 116.37274 * 143.43166 * 17 16 15 25 25 H 1.09000 * 109.46622 * 173.08998 * 1 2 3 26 26 H 1.08994 * 109.47111 * 293.09227 * 1 2 3 27 27 H 1.08996 * 109.46973 * 53.09463 * 1 2 3 28 28 H 0.97005 * 119.99791 * 355.20617 * 7 6 4 29 29 H 0.96995 * 119.99846 * 0.02562 * 14 12 2 30 30 H 1.08996 * 112.81740 * 25.34207 * 15 14 12 31 31 H 1.09000 * 113.68742 * 335.44142 * 16 15 14 32 32 H 1.08996 * 113.68492 * 106.57184 * 16 15 14 33 33 H 1.09006 * 113.68510 * 220.99467 * 18 17 16 34 34 H 1.08993 * 113.78023 * 89.86764 * 18 17 16 35 35 H 1.08999 * 110.63825 * 314.10631 * 19 17 16 36 36 H 1.09004 * 110.63775 * 77.00082 * 19 17 16 37 37 H 1.08994 * 109.47508 * 61.45564 * 22 21 20 38 38 H 1.09001 * 109.46974 * 181.45697 * 22 21 20 39 39 H 1.09002 * 109.46772 * 301.45333 * 22 21 20 40 40 H 1.08996 * 109.47127 * 58.54127 * 23 21 20 41 41 H 1.09001 * 109.46940 * 178.54784 * 23 21 20 42 42 H 1.08999 * 109.46457 * 298.54240 * 23 21 20 43 43 H 1.09003 * 110.56282 * 266.98853 * 24 17 16 44 44 H 1.09000 * 110.56188 * 29.83386 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5761 -1.6385 1.1341 6 6 1.7978 -0.1753 2.4793 7 7 1.8010 -0.9537 3.5394 8 14 1.4679 1.6540 2.6650 9 1 1.2416 1.9733 4.0975 10 1 2.6372 2.4210 2.1655 11 1 0.2625 2.0217 1.8794 12 6 2.0324 -0.7103 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.1947 -0.9409 -3.6507 16 6 3.3295 -0.1921 -4.3748 17 6 2.6360 -0.5858 -5.6751 18 6 1.3284 -0.6951 -4.9005 19 6 3.1366 -1.8745 -6.3459 20 8 2.5971 -1.7858 -7.6850 21 6 2.6883 -0.4086 -8.0906 22 6 3.9935 -0.1766 -8.8546 23 6 1.4952 -0.0474 -8.9778 24 6 2.6714 0.4498 -6.8073 25 1 -0.3632 -1.0202 -0.1236 26 1 -0.3633 0.4030 0.9453 27 1 -0.3633 0.6171 -0.8217 28 1 1.8991 -1.9133 3.4362 29 1 1.1494 0.5388 -2.5436 30 1 2.4123 -1.9938 -3.4714 31 1 3.3339 0.8819 -4.1888 32 1 4.3097 -0.6504 -4.2442 33 1 0.7200 -1.5529 -5.1872 34 1 0.7604 0.2345 -4.8636 35 1 4.2260 -1.8963 -6.3712 36 1 2.7478 -2.7523 -5.8296 37 1 4.0040 -0.7950 -9.7521 38 1 4.0678 0.8738 -9.1362 39 1 4.8384 -0.4433 -8.2197 40 1 0.5691 -0.2225 -8.4302 41 1 1.5573 1.0036 -9.2600 42 1 1.5093 -0.6660 -9.8751 43 1 1.7814 1.0786 -6.7790 44 1 3.5734 1.0582 -6.7417 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889723838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:01 Heat of formation + Delta-G solvation = -79.033556 kcal Electronic energy + Delta-G solvation = -22653.047072 eV Core-core repulsion = 19377.378621 eV Total energy + Delta-G solvation = -3275.668451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09415 -38.96954 -37.31090 -33.75637 -33.35216 -33.02511 -31.01870 -28.80408 -27.72345 -26.13301 -25.90588 -24.83363 -23.34347 -21.30625 -20.47047 -19.47948 -18.57652 -17.35330 -16.39007 -16.12721 -15.97646 -15.53035 -15.34627 -14.62556 -14.21411 -13.86039 -13.66679 -13.42403 -13.18796 -13.13942 -12.72770 -12.50129 -12.48622 -12.30356 -12.11409 -11.87087 -11.79524 -11.53839 -11.46256 -11.18375 -11.01849 -10.88947 -10.53071 -10.45146 -10.26247 -10.20102 -9.85251 -9.82140 -8.93814 -8.70411 -8.52558 -8.13348 -6.45591 -4.00593 3.35870 3.42234 3.52689 3.56669 3.61132 3.80662 4.17110 4.27700 4.48293 4.51355 4.61367 4.64670 4.78339 4.88782 4.99041 5.23328 5.26035 5.28779 5.31785 5.37232 5.47663 5.52774 5.58727 5.59752 5.62049 5.69551 5.73815 5.85476 5.90336 5.94428 5.99529 6.06924 6.20350 6.29460 6.44048 6.53746 6.75485 6.91096 7.02450 7.24507 7.84595 8.30144 8.48911 9.06704 9.13926 9.65328 10.93910 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040079 B = 0.003314 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.456540 B = 8447.273784 C = 8635.883786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.004 3.996 3 H 0.042 0.958 4 C -0.596 4.596 5 H 0.075 0.925 6 C 0.036 3.964 7 N -0.898 5.898 8 Si 1.035 2.965 9 H -0.284 1.284 10 H -0.284 1.284 11 H -0.277 1.277 12 C 0.527 3.473 13 O -0.537 6.537 14 N -0.737 5.737 15 C 0.127 3.873 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.128 4.128 19 C 0.070 3.930 20 O -0.368 6.368 21 C 0.096 3.904 22 C -0.163 4.163 23 C -0.142 4.142 24 C -0.129 4.129 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.271 0.729 29 H 0.395 0.605 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 5.625 -24.611 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 H 0.060 0.940 4 C -0.634 4.634 5 H 0.093 0.907 6 C -0.170 4.170 7 N -0.531 5.531 8 Si 0.863 3.137 9 H -0.210 1.210 10 H -0.210 1.210 11 H -0.203 1.203 12 C 0.316 3.684 13 O -0.411 6.411 14 N -0.390 5.390 15 C 0.021 3.979 16 C -0.176 4.176 17 C -0.114 4.114 18 C -0.166 4.166 19 C -0.007 4.007 20 O -0.288 6.288 21 C 0.057 3.943 22 C -0.220 4.220 23 C -0.200 4.200 24 C -0.167 4.167 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.229 0.771 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.395 5.888 -23.481 24.211 hybrid contribution 0.173 -0.620 -1.107 1.280 sum -0.222 5.267 -24.587 25.146 Atomic orbital electron populations 1.22102 0.97112 1.00287 1.00204 1.19168 0.93547 0.96765 0.92332 0.93989 1.21891 1.40433 1.11426 0.89625 0.90686 1.25702 0.93597 1.05645 0.92069 1.70821 1.43867 1.06508 1.31895 0.84181 0.77001 0.76258 0.76298 1.20974 1.21018 1.20334 1.21511 0.78512 0.84227 0.84183 1.90551 1.37382 1.26609 1.86598 1.46265 1.55108 1.32152 1.05462 1.22403 0.93794 0.98167 0.83554 1.23309 0.99234 1.01580 0.93440 1.22272 0.98458 0.96241 0.94447 1.23167 0.95701 1.02818 0.94897 1.23171 0.98099 0.97112 0.82303 1.88938 1.83331 1.25624 1.30866 1.22168 0.95405 0.82333 0.94422 1.22253 0.97097 1.01894 1.00789 1.21887 0.97235 1.01275 0.99570 1.22826 1.03232 0.97735 0.92877 0.93474 0.92104 0.95555 0.91924 0.77112 0.87311 0.89363 0.90788 0.90516 0.89413 0.91774 0.88681 0.92005 0.91679 0.92287 0.91832 0.91436 0.92056 0.90192 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.77 37.16 0.33 -2.56 16 2 C 0.00 0.09 2.23 -92.93 -0.21 -0.12 16 3 H 0.04 0.95 6.72 -51.93 -0.35 0.60 16 4 C -0.60 -17.30 8.57 -34.44 -0.30 -17.59 16 5 H 0.08 2.47 7.02 -52.49 -0.37 2.11 16 6 C 0.04 1.03 5.19 -17.82 -0.09 0.94 16 7 N -0.90 -27.81 13.70 55.43 0.76 -27.05 16 8 Si 1.03 24.44 26.45 -169.99 -4.50 19.94 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -5.88 6.15 56.52 0.35 -5.54 16 12 C 0.53 11.64 7.14 -10.99 -0.08 11.56 16 13 O -0.54 -14.06 15.09 5.55 0.08 -13.98 16 14 N -0.74 -11.91 5.26 -52.79 -0.28 -12.19 16 15 C 0.13 1.75 4.11 -66.88 -0.27 1.47 16 16 C -0.14 -1.59 7.23 -26.43 -0.19 -1.78 16 17 C -0.11 -1.13 1.05 -154.51 -0.16 -1.29 16 18 C -0.13 -1.35 7.08 -26.50 -0.19 -1.54 16 19 C 0.07 0.73 6.91 37.50 0.26 0.99 16 20 O -0.37 -4.19 10.86 -35.23 -0.38 -4.57 16 21 C 0.10 0.86 1.20 -89.88 -0.11 0.75 16 22 C -0.16 -1.27 8.63 37.16 0.32 -0.95 16 23 C -0.14 -1.09 8.69 37.16 0.32 -0.77 16 24 C -0.13 -1.10 5.74 -25.74 -0.15 -1.25 16 25 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 26 H 0.06 1.32 5.48 -51.93 -0.28 1.04 16 27 H 0.03 0.43 7.76 -51.93 -0.40 0.02 16 28 H 0.27 8.45 8.73 -40.82 -0.36 8.10 16 29 H 0.40 5.28 8.27 -40.82 -0.34 4.94 16 30 H 0.11 1.73 7.50 -51.93 -0.39 1.34 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 33 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 34 H 0.09 0.82 8.01 -51.93 -0.42 0.41 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.62 7.48 -51.93 -0.39 0.23 16 44 H 0.08 0.63 7.67 -51.93 -0.40 0.23 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -33.46 346.49 -7.22 -40.68 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.61 Total: 4.08 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.52 Total: -12.13 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.48 Total: -39.24 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.30 Total: -18.55 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.50 Total: 19.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.46 -7.22 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889723838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.355 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds