Wall clock time and date at job start Tue Mar 31 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47280 * 2 1 4 4 C 1.35773 * 117.00431 * 180.02562 * 3 2 1 5 5 C 1.35121 * 125.84288 * 179.97438 * 4 3 2 6 6 C 1.41455 * 106.79117 * 179.97438 * 5 4 3 7 7 C 1.34444 * 106.89415 * 0.02562 * 6 5 4 8 8 C 1.50699 * 125.73569 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47292 * 96.00657 * 8 7 6 10 10 C 1.46893 * 111.00240 * 168.79940 * 9 8 7 11 11 C 1.50699 * 109.47278 * 189.99853 * 10 9 8 12 12 H 1.07997 * 120.00206 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99731 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00292 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99796 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47063 * 89.99758 * 15 13 11 17 17 H 1.48498 * 109.47424 * 209.99974 * 15 13 11 18 18 H 1.48504 * 109.46838 * 329.99874 * 15 13 11 19 19 C 1.46896 * 110.99895 * 292.75845 * 9 8 7 20 20 C 1.53000 * 109.47212 * 88.50948 * 19 9 8 21 21 C 1.53001 * 109.47117 * 66.01224 * 20 19 9 22 22 C 1.53006 * 109.46896 * 186.00614 * 20 19 9 23 23 O 1.34334 * 125.83689 * 0.30470 * 4 3 2 24 24 H 1.08997 * 109.46991 * 300.00141 * 1 2 3 25 25 H 1.09007 * 109.47078 * 60.00170 * 1 2 3 26 26 H 1.09001 * 109.47148 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47050 * 240.00370 * 2 1 3 28 28 H 1.08995 * 109.47219 * 120.00475 * 2 1 3 29 29 H 1.08003 * 126.60839 * 359.96425 * 5 4 3 30 30 H 1.08000 * 126.54782 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.47359 * 336.00410 * 8 7 6 32 32 H 1.09003 * 109.46623 * 216.00176 * 8 7 6 33 33 H 1.09001 * 109.47270 * 310.00526 * 10 9 8 34 34 H 1.09002 * 109.46977 * 70.00188 * 10 9 8 35 35 H 0.97006 * 119.99848 * 180.02562 * 14 13 11 36 36 H 1.08999 * 109.47027 * 208.50887 * 19 9 8 37 37 H 1.08997 * 109.47098 * 328.51174 * 19 9 8 38 38 H 1.08997 * 109.47433 * 306.00878 * 20 19 9 39 39 H 1.09002 * 109.47029 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.46834 * 299.99398 * 21 20 19 41 41 H 1.08997 * 109.47252 * 59.99543 * 21 20 19 42 42 H 1.08996 * 109.46820 * 60.00340 * 22 20 19 43 43 H 1.09002 * 109.46659 * 179.97438 * 22 20 19 44 44 H 1.08996 * 109.47557 * 299.99870 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3524 1.5252 -0.0005 5 6 3.9932 2.7148 -0.0011 6 6 5.3793 2.4323 -0.0009 7 6 5.5052 1.0938 -0.0008 8 6 6.8055 0.3320 -0.0012 9 7 7.1552 -0.0404 1.3761 10 6 8.2646 -1.0031 1.3957 11 6 8.4336 -1.5465 2.7911 12 1 7.7819 -1.2107 3.5840 13 6 9.4204 -2.4724 3.0553 14 7 10.2138 -2.8818 2.0896 15 14 9.6296 -3.1466 4.7849 16 1 8.7916 -4.3618 4.9472 17 1 11.0553 -3.4946 5.0115 18 1 9.2080 -2.1193 5.7709 19 6 7.4754 1.1482 2.1777 20 6 6.1947 1.6978 2.8091 21 6 5.6515 0.6879 3.8220 22 6 6.5021 3.0176 3.5195 23 8 4.2748 0.5487 -0.0069 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.5354 3.6930 -0.0018 30 1 6.1827 3.1540 -0.0009 31 1 7.5934 0.9584 -0.4194 32 1 6.6985 -0.5690 -0.6051 33 1 8.0468 -1.8224 0.7105 34 1 9.1833 -0.5050 1.0860 35 1 10.9078 -3.5336 2.2756 36 1 8.1806 0.8774 2.9634 37 1 7.9202 1.9096 1.5369 38 1 5.4504 1.8685 2.0313 39 1 4.7388 1.0792 4.2714 40 1 5.4325 -0.2523 3.3158 41 1 6.3957 0.5171 4.5997 42 1 6.8891 3.7370 2.7980 43 1 5.5895 3.4093 3.9690 44 1 7.2463 2.8468 4.2974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891464180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:54 Heat of formation + Delta-G solvation = -30.327355 kcal Electronic energy + Delta-G solvation = -23138.533234 eV Core-core repulsion = 19864.976843 eV Total energy + Delta-G solvation = -3273.556391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.48364 -38.57384 -37.40289 -34.00492 -32.97242 -32.56755 -31.78762 -29.55673 -26.84268 -26.53105 -25.80437 -23.86531 -23.12456 -21.57407 -20.87384 -20.10447 -19.37143 -18.52102 -16.81639 -16.41255 -15.54118 -15.14532 -14.95575 -14.61197 -14.45446 -14.05890 -13.57673 -13.44760 -13.12543 -12.88699 -12.78559 -12.64593 -12.45575 -12.23193 -12.00682 -11.74717 -11.66180 -11.47735 -11.19212 -10.98482 -10.95221 -10.79349 -10.64923 -10.37561 -10.22392 -9.96651 -9.76392 -9.32451 -9.12520 -8.45215 -7.62783 -7.28960 -6.03792 -4.04336 2.02838 2.59929 2.85735 3.31680 3.37747 3.38104 3.41713 4.42307 4.76041 4.79704 4.92600 5.10992 5.15013 5.23849 5.32321 5.36848 5.52280 5.57085 5.58215 5.69718 5.76421 5.83572 5.86533 5.98032 6.05307 6.08726 6.18734 6.23371 6.38823 6.41724 6.55640 6.60851 6.70920 6.72208 7.01682 7.05413 7.09386 7.27118 7.31819 7.51884 7.81141 8.05760 8.17953 8.50957 9.04059 9.59753 11.07055 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.004605 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.242572 B = 6079.078974 C = 6398.695234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.272 6.272 4 C 0.170 3.830 5 C -0.231 4.231 6 C -0.187 4.187 7 C 0.018 3.982 8 C 0.129 3.871 9 N -0.530 5.530 10 C 0.194 3.806 11 C -0.504 4.504 12 H 0.067 0.933 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.067 3.933 20 C -0.103 4.103 21 C -0.131 4.131 22 C -0.142 4.142 23 O -0.192 6.192 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.031 0.969 34 H -0.007 1.007 35 H 0.261 0.739 36 H 0.083 0.917 37 H 0.021 0.979 38 H 0.079 0.921 39 H 0.031 0.969 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.724 9.296 -4.142 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.187 6.187 4 C 0.076 3.924 5 C -0.251 4.251 6 C -0.207 4.207 7 C -0.032 4.032 8 C 0.000 4.000 9 N -0.255 5.255 10 C 0.069 3.931 11 C -0.543 4.543 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.062 4.062 20 C -0.122 4.122 21 C -0.189 4.189 22 C -0.200 4.200 23 O -0.092 6.092 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.011 0.989 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.040 0.960 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.172 8.750 -3.966 17.121 hybrid contribution 0.867 -0.151 0.581 1.054 sum -13.306 8.598 -3.385 16.200 Atomic orbital electron populations 1.21778 0.92442 1.03091 1.03423 1.22783 0.95913 0.81217 1.02619 1.86409 1.12689 1.29292 1.90351 1.20247 0.80557 0.87040 1.04526 1.20649 0.92568 0.96020 1.15908 1.21234 0.95967 0.94863 1.08638 1.22252 0.83197 0.92209 1.05515 1.20581 0.87440 0.98339 0.93601 1.62050 1.43331 1.13031 1.07063 1.19774 0.85548 0.89484 0.98263 1.21178 1.15194 1.23338 0.94589 0.91468 1.24965 0.95808 0.96579 0.97161 1.69956 1.19935 1.32085 1.31913 0.86536 0.77090 0.79389 0.84649 1.20680 1.21365 1.19824 1.22125 0.96255 0.90398 0.97386 1.21428 0.98604 0.93873 0.98305 1.21652 0.98787 0.99955 0.98456 1.21784 1.00689 0.97440 1.00082 1.83966 1.15659 1.36503 1.73110 0.91425 0.91556 0.90121 0.91654 0.91301 0.83434 0.83439 0.92203 0.89754 0.95126 0.98934 0.92957 0.89836 0.96033 0.90257 0.95018 0.91408 0.93381 0.93496 0.93490 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.55 6.41 37.16 0.24 0.79 16 3 O -0.27 -3.77 10.21 -42.16 -0.43 -4.20 16 4 C 0.17 2.63 7.87 29.62 0.23 2.86 16 5 C -0.23 -3.34 10.78 -39.47 -0.43 -3.77 16 6 C -0.19 -2.77 8.50 -39.70 -0.34 -3.10 16 7 C 0.02 0.29 4.97 -35.65 -0.18 0.12 16 8 C 0.13 2.28 5.42 -4.98 -0.03 2.26 16 9 N -0.53 -11.05 3.91 -237.53 -0.93 -11.98 16 10 C 0.19 4.86 4.68 -4.98 -0.02 4.83 16 11 C -0.50 -13.73 8.13 -34.44 -0.28 -14.01 16 12 H 0.07 1.82 7.35 -52.49 -0.39 1.43 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 15 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 C 0.07 1.28 3.97 -3.83 -0.02 1.26 16 20 C -0.10 -1.77 2.69 -90.62 -0.24 -2.01 16 21 C -0.13 -2.38 8.93 37.16 0.33 -2.04 16 22 C -0.14 -2.07 9.19 37.16 0.34 -1.73 16 23 O -0.19 -3.28 10.16 -18.24 -0.19 -3.47 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.15 1.82 8.06 -52.48 -0.42 1.40 16 30 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.06 0.98 7.86 -51.93 -0.41 0.57 16 32 H 0.08 1.49 7.91 -51.93 -0.41 1.08 16 33 H 0.03 0.82 7.92 -51.93 -0.41 0.41 16 34 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.08 1.81 6.65 -51.93 -0.35 1.46 16 37 H 0.02 0.38 7.63 -51.93 -0.40 -0.01 16 38 H 0.08 1.38 3.76 -51.93 -0.20 1.18 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.38 7.78 -51.93 -0.40 0.97 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -29.39 356.53 -8.14 -37.53 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.59 Total: -0.29 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -0.10 Total: -13.91 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.19 Total: -37.48 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.62 Total: -7.67 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.39 -8.14 -37.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891464180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.204 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds