Wall clock time and date at job start Tue Mar 31 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47280 * 2 1 4 4 C 1.35773 * 117.00431 * 180.02562 * 3 2 1 5 5 C 1.35121 * 125.84288 * 179.97438 * 4 3 2 6 6 C 1.41455 * 106.79117 * 179.97438 * 5 4 3 7 7 C 1.34444 * 106.89415 * 0.02562 * 6 5 4 8 8 C 1.50699 * 125.73569 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47292 * 96.00657 * 8 7 6 10 10 C 1.46893 * 111.00240 * 168.79940 * 9 8 7 11 11 C 1.50699 * 109.47278 * 189.99853 * 10 9 8 12 12 H 1.07997 * 120.00206 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99731 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00292 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99796 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47063 * 89.99758 * 15 13 11 17 17 H 1.48498 * 109.47424 * 209.99974 * 15 13 11 18 18 H 1.48504 * 109.46838 * 329.99874 * 15 13 11 19 19 C 1.46896 * 110.99895 * 292.75845 * 9 8 7 20 20 C 1.53000 * 109.47212 * 88.50948 * 19 9 8 21 21 C 1.53001 * 109.47117 * 66.01224 * 20 19 9 22 22 C 1.53006 * 109.46896 * 186.00614 * 20 19 9 23 23 O 1.34334 * 125.83689 * 0.30470 * 4 3 2 24 24 H 1.08997 * 109.46991 * 300.00141 * 1 2 3 25 25 H 1.09007 * 109.47078 * 60.00170 * 1 2 3 26 26 H 1.09001 * 109.47148 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47050 * 240.00370 * 2 1 3 28 28 H 1.08995 * 109.47219 * 120.00475 * 2 1 3 29 29 H 1.08003 * 126.60839 * 359.96425 * 5 4 3 30 30 H 1.08000 * 126.54782 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.47359 * 336.00410 * 8 7 6 32 32 H 1.09003 * 109.46623 * 216.00176 * 8 7 6 33 33 H 1.09001 * 109.47270 * 310.00526 * 10 9 8 34 34 H 1.09002 * 109.46977 * 70.00188 * 10 9 8 35 35 H 0.97006 * 119.99848 * 180.02562 * 14 13 11 36 36 H 1.08999 * 109.47027 * 208.50887 * 19 9 8 37 37 H 1.08997 * 109.47098 * 328.51174 * 19 9 8 38 38 H 1.08997 * 109.47433 * 306.00878 * 20 19 9 39 39 H 1.09002 * 109.47029 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.46834 * 299.99398 * 21 20 19 41 41 H 1.08997 * 109.47252 * 59.99543 * 21 20 19 42 42 H 1.08996 * 109.46820 * 60.00340 * 22 20 19 43 43 H 1.09002 * 109.46659 * 179.97438 * 22 20 19 44 44 H 1.08996 * 109.47557 * 299.99870 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3524 1.5252 -0.0005 5 6 3.9932 2.7148 -0.0011 6 6 5.3793 2.4323 -0.0009 7 6 5.5052 1.0938 -0.0008 8 6 6.8055 0.3320 -0.0012 9 7 7.1552 -0.0404 1.3761 10 6 8.2646 -1.0031 1.3957 11 6 8.4336 -1.5465 2.7911 12 1 7.7819 -1.2107 3.5840 13 6 9.4204 -2.4724 3.0553 14 7 10.2138 -2.8818 2.0896 15 14 9.6296 -3.1466 4.7849 16 1 8.7916 -4.3618 4.9472 17 1 11.0553 -3.4946 5.0115 18 1 9.2080 -2.1193 5.7709 19 6 7.4754 1.1482 2.1777 20 6 6.1947 1.6978 2.8091 21 6 5.6515 0.6879 3.8220 22 6 6.5021 3.0176 3.5195 23 8 4.2748 0.5487 -0.0069 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.5354 3.6930 -0.0018 30 1 6.1827 3.1540 -0.0009 31 1 7.5934 0.9584 -0.4194 32 1 6.6985 -0.5690 -0.6051 33 1 8.0468 -1.8224 0.7105 34 1 9.1833 -0.5050 1.0860 35 1 10.9078 -3.5336 2.2756 36 1 8.1806 0.8774 2.9634 37 1 7.9202 1.9096 1.5369 38 1 5.4504 1.8685 2.0313 39 1 4.7388 1.0792 4.2714 40 1 5.4325 -0.2523 3.3158 41 1 6.3957 0.5171 4.5997 42 1 6.8891 3.7370 2.7980 43 1 5.5895 3.4093 3.9690 44 1 7.2463 2.8468 4.2974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891464180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:54 Heat of formation + Delta-G solvation = -46.151559 kcal Electronic energy + Delta-G solvation = -23139.219423 eV Core-core repulsion = 19864.976843 eV Total energy + Delta-G solvation = -3274.242580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.69492 -39.67526 -38.92441 -35.57809 -34.58320 -34.06771 -32.74167 -30.99357 -28.66773 -27.85656 -27.19670 -25.43550 -24.21547 -22.80642 -22.47783 -21.35988 -20.81360 -19.63322 -18.46122 -17.95733 -17.03498 -16.44402 -16.36672 -16.14808 -15.71065 -15.58586 -15.01299 -14.85628 -14.31247 -14.23903 -14.04022 -13.73778 -13.67473 -13.59256 -13.34536 -13.18979 -12.95639 -12.85032 -12.72717 -12.57672 -12.40318 -12.35549 -11.98941 -11.86204 -11.70402 -11.55188 -11.40448 -11.27672 -10.59428 -10.41908 -9.02657 -8.79932 -8.17920 -6.25970 0.79478 1.40807 1.41398 1.47701 1.52373 1.69820 2.30730 2.41557 3.14789 3.35792 3.93052 3.94984 4.01752 4.05955 4.10446 4.19900 4.29260 4.34599 4.45071 4.51717 4.59769 4.70919 4.85002 4.88255 4.89029 4.93754 4.98303 4.99467 5.06077 5.11372 5.17087 5.17697 5.25606 5.28173 5.38146 5.55993 5.61590 5.66649 5.71818 5.88414 6.08626 6.34807 6.40574 6.62995 6.90270 7.42761 8.92731 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.004605 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.242572 B = 6079.078974 C = 6398.695234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 O -0.275 6.275 4 C 0.162 3.838 5 C -0.230 4.230 6 C -0.167 4.167 7 C -0.009 4.009 8 C 0.130 3.870 9 N -0.538 5.538 10 C 0.209 3.791 11 C -0.514 4.514 12 H 0.064 0.936 13 C 0.005 3.995 14 N -0.934 5.934 15 Si 0.960 3.040 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.071 3.929 20 C -0.097 4.097 21 C -0.127 4.127 22 C -0.137 4.137 23 O -0.212 6.212 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.004 0.996 34 H -0.030 1.030 35 H 0.263 0.737 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.147 11.026 -3.454 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 O -0.191 6.191 4 C 0.068 3.932 5 C -0.250 4.250 6 C -0.187 4.187 7 C -0.057 4.057 8 C 0.002 3.998 9 N -0.262 5.262 10 C 0.084 3.916 11 C -0.553 4.553 12 H 0.082 0.918 13 C -0.193 4.193 14 N -0.575 5.575 15 Si 0.785 3.215 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.057 4.057 20 C -0.116 4.116 21 C -0.184 4.184 22 C -0.195 4.195 23 O -0.113 6.113 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.118 0.882 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.190 0.810 30 H 0.186 0.814 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.023 0.977 34 H -0.012 1.012 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.616 10.497 -3.280 19.100 hybrid contribution 1.225 -0.678 0.304 1.433 sum -14.391 9.819 -2.976 17.674 Atomic orbital electron populations 1.21797 0.89788 1.04545 1.03873 1.23026 0.97990 0.80089 1.02137 1.86419 1.11820 1.30733 1.90136 1.20644 0.81037 0.87176 1.04326 1.20989 0.92263 0.96704 1.15038 1.21493 0.96842 0.94168 1.06207 1.21971 0.82608 0.92767 1.08390 1.20526 0.88960 0.98618 0.91660 1.61965 1.41227 1.13611 1.09415 1.19400 0.85992 0.89603 0.96633 1.21455 1.15042 1.23351 0.95425 0.91758 1.25794 0.95516 0.96894 1.01090 1.70073 1.20603 1.32796 1.33988 0.85516 0.77187 0.78778 0.79972 1.20193 1.20782 1.18996 1.22103 0.97021 0.89969 0.96600 1.21388 0.97227 0.94809 0.98132 1.21591 0.99480 0.99105 0.98240 1.21739 1.01508 0.96036 1.00203 1.83925 1.16134 1.37606 1.73644 0.91182 0.90845 0.88165 0.91679 0.92321 0.80968 0.81370 0.90677 0.90698 0.97743 1.01214 0.92809 0.92732 0.94489 0.89985 0.92942 0.94342 0.94424 0.91849 0.91878 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.04 0.90 6.41 71.98 0.46 1.36 16 3 O -0.28 -7.26 10.21 -68.88 -0.70 -7.97 16 4 C 0.16 4.78 7.87 67.10 0.53 5.31 16 5 C -0.23 -6.03 10.78 22.34 0.24 -5.79 16 6 C -0.17 -4.54 8.50 22.19 0.19 -4.35 16 7 C -0.01 -0.28 4.97 24.82 0.12 -0.16 16 8 C 0.13 4.68 5.42 85.56 0.46 5.14 16 9 N -0.54 -22.94 3.91 -905.40 -3.54 -26.48 16 10 C 0.21 10.95 4.68 85.56 0.40 11.35 16 11 C -0.51 -28.80 8.13 25.60 0.21 -28.59 16 12 H 0.06 3.57 7.35 -2.91 -0.02 3.55 16 13 C 0.00 0.28 5.46 84.65 0.46 0.74 16 14 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 15 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 C 0.07 2.71 3.97 86.30 0.34 3.05 16 20 C -0.10 -3.17 2.69 -10.79 -0.03 -3.20 16 21 C -0.13 -4.52 8.93 71.98 0.64 -3.88 16 22 C -0.14 -3.61 9.19 71.98 0.66 -2.95 16 23 O -0.21 -7.19 10.16 16.72 0.17 -7.02 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 31 H 0.08 2.44 7.86 -2.39 -0.02 2.42 16 32 H 0.07 2.77 7.91 -2.39 -0.02 2.75 16 33 H 0.00 0.25 7.92 -2.39 -0.02 0.23 16 34 H -0.03 -1.66 8.12 -2.39 -0.02 -1.68 16 35 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 36 H 0.05 2.39 6.65 -2.39 -0.02 2.38 16 37 H 0.04 1.28 7.63 -2.39 -0.02 1.26 16 38 H 0.08 2.68 3.76 -2.39 -0.01 2.68 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.57 7.78 -2.39 -0.02 1.55 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -64.08 356.53 4.62 -59.46 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.95 Total: 14.25 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 5.43 Total: -23.25 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -3.26 Total: -81.96 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.53 Total: -14.99 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.08 4.62 -59.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891464180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.305 kcal (2) G-P(sol) polarization free energy of solvation -64.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds