Wall clock time and date at job start Tue Mar 31 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47130 * 2 1 4 4 C 1.35776 * 117.00086 * 179.97438 * 3 2 1 5 5 C 1.35130 * 125.84426 * 180.02562 * 4 3 2 6 6 C 1.41445 * 106.79310 * 179.97438 * 5 4 3 7 7 C 1.34442 * 106.89755 * 0.02562 * 6 5 4 8 8 C 1.50695 * 125.74056 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47428 * 89.99675 * 8 7 6 10 10 C 1.46904 * 111.00028 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46819 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47478 * 300.00059 * 11 10 9 13 13 C 1.53008 * 109.47114 * 60.00084 * 11 10 9 14 14 C 1.53003 * 109.47080 * 179.97438 * 11 10 9 15 15 C 1.50704 * 109.47311 * 180.02562 * 14 11 10 16 16 H 1.08001 * 119.99580 * 0.02562 * 15 14 11 17 17 C 1.37870 * 119.99916 * 179.97438 * 15 14 11 18 18 N 1.31516 * 120.00289 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99872 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46876 * 120.00434 * 19 17 15 22 22 H 1.48500 * 109.47328 * 239.99941 * 19 17 15 23 23 O 1.34326 * 125.83803 * 359.94790 * 4 3 2 24 24 H 1.09002 * 109.46807 * 299.99826 * 1 2 3 25 25 H 1.09000 * 109.47069 * 59.99741 * 1 2 3 26 26 H 1.08996 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47457 * 240.00557 * 2 1 3 28 28 H 1.09000 * 109.47069 * 120.00258 * 2 1 3 29 29 H 1.08001 * 126.59746 * 0.21608 * 5 4 3 30 30 H 1.08002 * 126.54788 * 180.02562 * 6 5 4 31 31 H 1.08994 * 109.47039 * 209.99937 * 8 7 6 32 32 H 1.09004 * 109.47021 * 329.99742 * 8 7 6 33 33 H 1.00905 * 111.00273 * 303.95235 * 9 8 7 34 34 H 1.08996 * 109.46927 * 299.99936 * 10 9 8 35 35 H 1.08999 * 109.47205 * 60.00034 * 10 9 8 36 36 H 1.09004 * 109.47363 * 60.00426 * 12 11 10 37 37 H 1.08999 * 109.47474 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.47039 * 300.00076 * 12 11 10 39 39 H 1.08997 * 109.46841 * 59.99950 * 13 11 10 40 40 H 1.09002 * 109.46660 * 179.97438 * 13 11 10 41 41 H 1.08995 * 109.46906 * 299.99734 * 13 11 10 42 42 H 1.08996 * 109.46953 * 300.00305 * 14 11 10 43 43 H 1.08999 * 109.46917 * 60.00242 * 14 11 10 44 44 H 0.96999 * 120.00494 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3524 1.5252 0.0005 5 6 3.9934 2.7148 0.0011 6 6 5.3793 2.4323 0.0021 7 6 5.5053 1.0938 0.0016 8 6 6.8055 0.3320 0.0028 9 7 7.2263 0.0838 1.3881 10 6 8.4936 -0.6581 1.4285 11 6 8.8988 -0.8965 2.8844 12 6 9.0725 0.4486 3.5924 13 6 7.8103 -1.7076 3.5904 14 6 10.2184 -1.6697 2.9265 15 6 10.6172 -1.9052 4.3607 16 1 9.9917 -1.5402 5.1619 17 6 11.7799 -2.5873 4.6497 18 7 12.5413 -3.0322 3.6740 19 14 12.2746 -2.8786 6.4273 20 1 11.2561 -2.2824 7.3286 21 1 12.3670 -4.3385 6.6825 22 1 13.5938 -2.2469 6.6839 23 8 4.2748 0.5487 0.0021 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.5354 3.6929 0.0045 30 1 6.1828 3.1540 0.0032 31 1 6.6698 -0.6192 -0.5117 32 1 7.5695 0.9166 -0.5098 33 1 7.2967 0.9475 1.9050 34 1 8.3700 -1.6162 0.9237 35 1 9.2691 -0.0800 0.9259 36 1 8.1321 0.9991 3.5626 37 1 9.3615 0.2787 4.6296 38 1 9.8479 1.0264 3.0895 39 1 7.6866 -2.6659 3.0861 40 1 8.0992 -1.8779 4.6276 41 1 6.8700 -1.1572 3.5605 42 1 10.0942 -2.6280 2.4223 43 1 10.9940 -1.0922 2.4235 44 1 13.3595 -3.5118 3.8773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894513564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:52 Heat of formation + Delta-G solvation = -42.834810 kcal Electronic energy + Delta-G solvation = -21816.855693 eV Core-core repulsion = 18542.756938 eV Total energy + Delta-G solvation = -3274.098755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.72521 -38.79194 -37.69472 -34.67607 -33.18844 -32.33422 -31.87035 -29.34719 -26.96473 -26.32966 -25.77967 -24.27297 -23.42049 -22.12332 -21.89987 -20.55366 -18.85328 -17.96430 -17.11676 -16.31263 -15.95783 -15.56600 -15.20424 -14.72746 -14.62270 -14.09807 -13.82245 -13.57786 -13.25952 -13.03765 -12.96512 -12.74278 -12.62924 -12.54091 -12.00882 -11.98691 -11.75559 -11.56899 -11.21152 -10.99351 -10.88002 -10.75262 -10.49829 -10.28257 -10.12312 -9.95645 -9.69173 -9.04425 -8.83695 -8.31876 -8.25942 -7.97053 -5.96243 -3.96201 1.66450 2.28332 2.53428 3.07294 3.32665 3.40623 3.44247 4.44285 4.53543 4.55905 4.59391 4.83133 4.86844 4.90732 5.12467 5.24565 5.39587 5.39726 5.43506 5.56400 5.64555 5.66995 5.73694 5.78818 5.89517 5.97664 6.21520 6.31224 6.37849 6.49827 6.66451 6.70782 6.77988 6.83567 7.15446 7.19222 7.20800 7.26280 7.34835 7.59804 7.70512 7.85094 8.04133 8.48516 9.09351 9.66714 11.15463 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.002810 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.535346 B = 9961.816654 C =10342.448946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.270 6.270 4 C 0.180 3.820 5 C -0.234 4.234 6 C -0.179 4.179 7 C -0.008 4.008 8 C 0.137 3.863 9 N -0.684 5.684 10 C 0.069 3.931 11 C -0.058 4.058 12 C -0.130 4.130 13 C -0.117 4.117 14 C 0.033 3.967 15 C -0.505 4.505 16 H 0.060 0.940 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 O -0.195 6.195 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.343 0.657 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.307 8.831 -9.383 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.185 6.185 4 C 0.086 3.914 5 C -0.254 4.254 6 C -0.199 4.199 7 C -0.056 4.056 8 C 0.009 3.991 9 N -0.317 5.317 10 C -0.059 4.059 11 C -0.058 4.058 12 C -0.187 4.187 13 C -0.174 4.174 14 C -0.005 4.005 15 C -0.544 4.544 16 H 0.078 0.922 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 O -0.095 6.095 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.170 0.830 30 H 0.170 0.830 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.748 7.994 -9.348 23.265 hybrid contribution 1.004 0.362 0.667 1.259 sum -18.743 8.356 -8.680 22.282 Atomic orbital electron populations 1.21788 0.92191 1.03260 1.03593 1.22824 0.96175 0.80966 1.02596 1.86444 1.12399 1.29539 1.90118 1.20309 0.80641 0.86930 1.03553 1.20738 0.92556 0.96296 1.15776 1.21393 0.96295 0.94857 1.07404 1.22067 0.83228 0.92184 1.08167 1.20316 0.87425 0.99127 0.92277 1.60604 1.33804 1.26677 1.10660 1.22158 0.87416 0.97357 0.98942 1.20629 0.98096 0.95910 0.91163 1.21780 0.98619 0.96282 1.02062 1.21608 0.96766 0.98511 1.00522 1.19138 0.89590 0.94547 0.97181 1.21272 1.06129 1.34596 0.92385 0.92228 1.25017 0.96761 0.96067 0.96807 1.69974 1.14050 1.38661 1.31086 0.86607 0.78396 0.77822 0.85609 1.19773 1.21170 1.21192 1.83939 1.15627 1.36620 1.73304 0.91311 0.91433 0.89973 0.91563 0.91275 0.83037 0.83009 0.89533 0.91982 0.83728 0.91303 0.95461 0.94778 0.91642 0.94007 0.94164 0.92639 0.93932 0.96627 0.96833 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.05 0.43 6.41 37.16 0.24 0.67 16 3 O -0.27 -3.12 10.21 -42.18 -0.43 -3.55 16 4 C 0.18 2.32 7.87 29.63 0.23 2.55 16 5 C -0.23 -2.80 10.94 -39.47 -0.43 -3.23 16 6 C -0.18 -2.10 10.80 -39.70 -0.43 -2.53 16 7 C -0.01 -0.10 6.83 -35.65 -0.24 -0.34 16 8 C 0.14 1.70 6.21 -4.98 -0.03 1.67 16 9 N -0.68 -9.95 5.70 -115.06 -0.66 -10.61 16 10 C 0.07 1.16 4.65 -3.82 -0.02 1.15 16 11 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 12 C -0.13 -2.40 7.89 37.16 0.29 -2.10 16 13 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 14 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 15 C -0.51 -13.76 7.65 -34.44 -0.26 -14.03 16 16 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 17 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 O -0.19 -2.69 10.16 -18.25 -0.19 -2.88 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.34 4.84 6.76 -39.29 -0.27 4.57 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 37 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 1.16 6.61 -51.93 -0.34 0.81 16 41 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -30.34 358.04 -7.90 -38.24 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.46 Total: 0.68 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.27 Total: -17.81 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.08 Total: -36.63 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.62 Total: -6.43 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.34 -7.90 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894513564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.599 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds