Wall clock time and date at job start Tue Mar 31 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47130 * 2 1 4 4 C 1.35776 * 117.00086 * 179.97438 * 3 2 1 5 5 C 1.35130 * 125.84426 * 180.02562 * 4 3 2 6 6 C 1.41445 * 106.79310 * 179.97438 * 5 4 3 7 7 C 1.34442 * 106.89755 * 0.02562 * 6 5 4 8 8 C 1.50695 * 125.74056 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47428 * 89.99675 * 8 7 6 10 10 C 1.46904 * 111.00028 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46819 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47478 * 300.00059 * 11 10 9 13 13 C 1.53008 * 109.47114 * 60.00084 * 11 10 9 14 14 C 1.53003 * 109.47080 * 179.97438 * 11 10 9 15 15 C 1.50704 * 109.47311 * 180.02562 * 14 11 10 16 16 H 1.08001 * 119.99580 * 0.02562 * 15 14 11 17 17 C 1.37870 * 119.99916 * 179.97438 * 15 14 11 18 18 N 1.31516 * 120.00289 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99872 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46876 * 120.00434 * 19 17 15 22 22 H 1.48500 * 109.47328 * 239.99941 * 19 17 15 23 23 O 1.34326 * 125.83803 * 359.94790 * 4 3 2 24 24 H 1.09002 * 109.46807 * 299.99826 * 1 2 3 25 25 H 1.09000 * 109.47069 * 59.99741 * 1 2 3 26 26 H 1.08996 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47457 * 240.00557 * 2 1 3 28 28 H 1.09000 * 109.47069 * 120.00258 * 2 1 3 29 29 H 1.08001 * 126.59746 * 0.21608 * 5 4 3 30 30 H 1.08002 * 126.54788 * 180.02562 * 6 5 4 31 31 H 1.08994 * 109.47039 * 209.99937 * 8 7 6 32 32 H 1.09004 * 109.47021 * 329.99742 * 8 7 6 33 33 H 1.00905 * 111.00273 * 303.95235 * 9 8 7 34 34 H 1.08996 * 109.46927 * 299.99936 * 10 9 8 35 35 H 1.08999 * 109.47205 * 60.00034 * 10 9 8 36 36 H 1.09004 * 109.47363 * 60.00426 * 12 11 10 37 37 H 1.08999 * 109.47474 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.47039 * 300.00076 * 12 11 10 39 39 H 1.08997 * 109.46841 * 59.99950 * 13 11 10 40 40 H 1.09002 * 109.46660 * 179.97438 * 13 11 10 41 41 H 1.08995 * 109.46906 * 299.99734 * 13 11 10 42 42 H 1.08996 * 109.46953 * 300.00305 * 14 11 10 43 43 H 1.08999 * 109.46917 * 60.00242 * 14 11 10 44 44 H 0.96999 * 120.00494 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3524 1.5252 0.0005 5 6 3.9934 2.7148 0.0011 6 6 5.3793 2.4323 0.0021 7 6 5.5053 1.0938 0.0016 8 6 6.8055 0.3320 0.0028 9 7 7.2263 0.0838 1.3881 10 6 8.4936 -0.6581 1.4285 11 6 8.8988 -0.8965 2.8844 12 6 9.0725 0.4486 3.5924 13 6 7.8103 -1.7076 3.5904 14 6 10.2184 -1.6697 2.9265 15 6 10.6172 -1.9052 4.3607 16 1 9.9917 -1.5402 5.1619 17 6 11.7799 -2.5873 4.6497 18 7 12.5413 -3.0322 3.6740 19 14 12.2746 -2.8786 6.4273 20 1 11.2561 -2.2824 7.3286 21 1 12.3670 -4.3385 6.6825 22 1 13.5938 -2.2469 6.6839 23 8 4.2748 0.5487 0.0021 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.5354 3.6929 0.0045 30 1 6.1828 3.1540 0.0032 31 1 6.6698 -0.6192 -0.5117 32 1 7.5695 0.9166 -0.5098 33 1 7.2967 0.9475 1.9050 34 1 8.3700 -1.6162 0.9237 35 1 9.2691 -0.0800 0.9259 36 1 8.1321 0.9991 3.5626 37 1 9.3615 0.2787 4.6296 38 1 9.8479 1.0264 3.0895 39 1 7.6866 -2.6659 3.0861 40 1 8.0992 -1.8779 4.6276 41 1 6.8700 -1.1572 3.5605 42 1 10.0942 -2.6280 2.4223 43 1 10.9940 -1.0922 2.4235 44 1 13.3595 -3.5118 3.8773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894513564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:51 Heat of formation + Delta-G solvation = -59.943072 kcal Electronic energy + Delta-G solvation = -21817.597563 eV Core-core repulsion = 18542.756938 eV Total energy + Delta-G solvation = -3274.840625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.65455 -39.63616 -39.16204 -36.06949 -34.36564 -33.98687 -32.64394 -30.47403 -28.85866 -27.88717 -27.03149 -25.62572 -24.32561 -23.69279 -22.78781 -21.46434 -19.77824 -19.50421 -18.32120 -18.00134 -17.20969 -16.61934 -16.36075 -16.07913 -15.68307 -15.54234 -15.12649 -14.76835 -14.32780 -14.24438 -14.06956 -13.85315 -13.80508 -13.64266 -13.38250 -13.31126 -12.80724 -12.70248 -12.67064 -12.54324 -12.39584 -12.23050 -12.14346 -11.89618 -11.87018 -11.37540 -10.90817 -10.83150 -10.73601 -10.49708 -9.39478 -8.92925 -8.13079 -6.19467 0.71302 1.40407 1.41221 1.41934 1.53673 1.63204 2.25988 2.44589 3.21068 3.36010 3.87349 3.93612 3.97528 4.02229 4.12397 4.22210 4.26500 4.33247 4.41165 4.50513 4.59158 4.78822 4.81279 4.85659 4.86771 4.90657 4.96586 5.01466 5.08923 5.16681 5.21769 5.22822 5.51643 5.53422 5.55387 5.59561 5.65289 5.81349 5.88384 5.94154 6.00755 6.29985 6.38212 6.47190 6.95819 7.47713 8.99325 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.002810 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.535346 B = 9961.816654 C =10342.448946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.278 6.278 4 C 0.165 3.835 5 C -0.240 4.240 6 C -0.171 4.171 7 C -0.027 4.027 8 C 0.141 3.859 9 N -0.686 5.686 10 C 0.082 3.918 11 C -0.054 4.054 12 C -0.123 4.123 13 C -0.108 4.108 14 C 0.039 3.961 15 C -0.512 4.512 16 H 0.064 0.936 17 C -0.004 4.004 18 N -0.937 5.937 19 Si 0.954 3.046 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.282 1.282 23 O -0.211 6.211 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.169 0.831 30 H 0.175 0.825 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.348 0.652 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.030 0.970 40 H 0.038 0.962 41 H 0.062 0.938 42 H -0.014 1.014 43 H -0.011 1.011 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.620 10.104 -8.997 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.193 6.193 4 C 0.072 3.928 5 C -0.260 4.260 6 C -0.191 4.191 7 C -0.075 4.075 8 C 0.013 3.987 9 N -0.320 5.320 10 C -0.046 4.046 11 C -0.055 4.055 12 C -0.181 4.181 13 C -0.165 4.165 14 C 0.001 3.999 15 C -0.550 4.550 16 H 0.083 0.917 17 C -0.201 4.201 18 N -0.579 5.579 19 Si 0.780 3.220 20 H -0.186 1.186 21 H -0.209 1.209 22 H -0.208 1.208 23 O -0.112 6.112 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.187 0.813 30 H 0.193 0.807 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.168 0.832 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.004 0.996 43 H 0.007 0.993 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.082 9.279 -8.960 24.715 hybrid contribution 1.350 -0.029 0.495 1.438 sum -19.733 9.250 -8.465 23.380 Atomic orbital electron populations 1.21811 0.90042 1.04603 1.03792 1.23058 0.97872 0.79896 1.02402 1.86444 1.11839 1.31031 1.90025 1.20657 0.81099 0.87199 1.03870 1.21098 0.92856 0.96834 1.15227 1.21709 0.96806 0.94773 1.05787 1.22184 0.83021 0.92741 1.09565 1.20324 0.87850 0.99577 0.90965 1.60495 1.32107 1.26951 1.12453 1.21849 0.88706 0.97596 0.96493 1.20488 0.95327 0.95995 0.93677 1.21693 1.00268 0.95634 1.00466 1.21509 0.97472 0.98355 0.99164 1.19022 0.91843 0.93456 0.95558 1.21644 1.05989 1.33811 0.93557 0.91749 1.25894 0.97031 0.96095 1.01091 1.70105 1.14637 1.39780 1.33347 0.85548 0.78201 0.77664 0.80563 1.18593 1.20940 1.20776 1.83914 1.16179 1.37404 1.73735 0.91288 0.91017 0.88041 0.91394 0.91859 0.81318 0.80740 0.89712 0.89889 0.83186 0.92082 0.95123 0.91664 0.93571 0.93924 0.95073 0.94322 0.91914 0.99607 0.99304 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.04 0.71 6.41 71.98 0.46 1.17 16 3 O -0.28 -6.20 10.21 -68.92 -0.70 -6.90 16 4 C 0.17 4.10 7.87 67.10 0.53 4.63 16 5 C -0.24 -5.30 10.94 22.34 0.24 -5.06 16 6 C -0.17 -3.59 10.80 22.19 0.24 -3.35 16 7 C -0.03 -0.64 6.83 24.82 0.17 -0.47 16 8 C 0.14 3.22 6.21 85.56 0.53 3.75 16 9 N -0.69 -18.59 5.70 -517.95 -2.95 -21.54 16 10 C 0.08 2.68 4.65 86.30 0.40 3.08 16 11 C -0.05 -2.12 0.60 -52.18 -0.03 -2.16 16 12 C -0.12 -4.36 7.89 71.98 0.57 -3.79 16 13 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 14 C 0.04 1.98 4.04 29.85 0.12 2.10 16 15 C -0.51 -28.18 7.65 25.60 0.20 -27.98 16 16 H 0.06 3.42 5.68 -2.91 -0.02 3.41 16 17 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 18 N -0.94 -57.00 13.29 21.44 0.28 -56.71 16 19 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 O -0.21 -5.65 10.16 16.69 0.17 -5.48 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.35 8.83 6.76 -89.69 -0.61 8.22 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 1.89 6.57 -2.38 -0.02 1.88 16 37 H 0.05 1.80 6.62 -2.39 -0.02 1.78 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.04 1.58 6.61 -2.39 -0.02 1.57 16 41 H 0.06 2.14 7.60 -2.39 -0.02 2.12 16 42 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 44 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -65.45 358.04 4.40 -61.05 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.36 Total: 15.36 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 5.21 Total: -32.25 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -2.67 Total: -78.26 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.53 Total: -12.38 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -65.45 4.40 -61.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894513564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.107 kcal (2) G-P(sol) polarization free energy of solvation -65.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds