Wall clock time and date at job start Tue Mar 31 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47311 * 2 1 4 4 C 1.50705 * 109.47221 * 240.00804 * 2 1 3 5 5 H 1.08001 * 119.99769 * 239.99917 * 4 2 1 6 6 C 1.37872 * 120.00345 * 59.99555 * 4 2 1 7 7 N 1.31517 * 119.99841 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00156 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47189 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46995 * 119.99872 * 8 6 4 11 11 H 1.48500 * 109.47115 * 239.99714 * 8 6 4 12 12 C 1.50697 * 109.47408 * 120.00367 * 2 1 3 13 13 O 1.21277 * 120.00078 * 120.00216 * 12 2 1 14 14 N 1.34777 * 120.00015 * 299.99872 * 12 2 1 15 15 C 1.46496 * 119.99833 * 179.97438 * 14 12 2 16 16 C 1.53009 * 109.46855 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.39568 * 305.11766 * 16 15 14 18 18 C 1.53076 * 109.43419 * 185.23130 * 16 15 14 19 19 C 1.53345 * 109.08544 * 180.52734 * 18 16 15 20 20 C 1.52845 * 108.73910 * 54.84474 * 19 18 16 21 21 C 1.53360 * 113.54701 * 77.72837 * 20 19 18 22 22 C 1.53857 * 86.95417 * 89.51852 * 21 20 19 23 23 C 1.53336 * 113.59199 * 175.70663 * 20 19 18 24 24 C 1.52752 * 112.69046 * 306.77667 * 20 19 18 25 25 O 1.42865 * 109.43294 * 65.00221 * 16 15 14 26 26 H 1.08999 * 109.47228 * 299.99278 * 1 2 3 27 27 H 1.08999 * 109.47381 * 59.99363 * 1 2 3 28 28 H 1.08997 * 109.46936 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00235 * 179.97438 * 7 6 4 30 30 H 0.96998 * 119.99561 * 0.02562 * 14 12 2 31 31 H 1.09001 * 109.47643 * 60.00839 * 15 14 12 32 32 H 1.09005 * 109.47412 * 299.99746 * 15 14 12 33 33 H 1.08999 * 109.53376 * 300.41499 * 18 16 15 34 34 H 1.09001 * 109.53043 * 60.64263 * 18 16 15 35 35 H 1.09007 * 109.59056 * 295.07000 * 19 18 16 36 36 H 1.08996 * 109.59267 * 174.62288 * 19 18 16 37 37 H 1.08998 * 113.63455 * 204.03413 * 21 20 19 38 38 H 1.08997 * 113.62977 * 335.00262 * 21 20 19 39 39 H 1.09002 * 113.60176 * 270.54800 * 22 21 20 40 40 H 1.08992 * 113.60282 * 139.67773 * 22 21 20 41 41 H 1.09001 * 113.62827 * 25.03305 * 23 20 19 42 42 H 1.08994 * 113.63587 * 155.91889 * 23 20 19 43 43 H 1.09002 * 109.52920 * 293.74843 * 24 20 19 44 44 H 1.08996 * 109.58738 * 173.57219 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3213 -1.1200 -4.0081 9 1 3.1455 -2.2873 -3.6040 10 1 1.1660 -1.5863 -4.8162 11 1 3.1465 -0.1869 -4.8166 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1947 -0.9411 3.6506 16 6 1.6843 -0.2201 4.8999 17 1 1.9716 0.8304 4.8544 18 6 2.2993 -0.8628 6.1458 19 6 1.7724 -0.1431 7.3931 20 6 0.2444 -0.1664 7.3649 21 6 -0.3556 -1.5143 7.7832 22 6 -0.3460 -0.9780 9.2253 23 6 -0.4018 0.4349 8.6187 24 6 -0.3291 0.3790 6.0584 25 8 0.2605 -0.3215 4.9588 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7094 1.1621 -3.4844 30 1 1.1488 0.5384 2.5435 31 1 3.2848 -0.9414 3.6508 32 1 1.8310 -1.9686 3.6504 33 1 2.0211 -1.9159 6.1876 34 1 3.3848 -0.7728 6.1041 35 1 2.1223 0.8893 7.3946 36 1 2.1293 -0.6535 8.2877 37 1 -1.3566 -1.6885 7.3884 38 1 0.3155 -2.3588 7.6265 39 1 0.5796 -1.1862 9.7621 40 1 -1.2360 -1.2436 9.7956 41 1 0.2322 1.1567 9.1335 42 1 -1.4150 0.8018 8.4549 43 1 -0.1026 1.4421 5.9767 44 1 -1.4094 0.2346 6.0451 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894525264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:14 Heat of formation + Delta-G solvation = -83.083810 kcal Electronic energy + Delta-G solvation = -22567.868153 eV Core-core repulsion = 19292.024070 eV Total energy + Delta-G solvation = -3275.844083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77049 -38.74553 -37.46849 -34.18374 -33.63367 -32.79471 -30.64287 -29.53728 -26.91907 -25.97953 -25.05476 -24.14922 -22.93597 -21.81617 -21.23494 -19.25940 -18.42824 -16.72795 -16.43398 -16.11712 -15.84774 -15.69089 -15.14852 -14.60383 -14.35577 -14.22206 -14.05219 -13.53412 -13.23023 -12.89673 -12.69053 -12.67201 -12.53192 -12.02804 -11.74317 -11.42112 -11.36907 -11.31805 -11.24106 -10.96248 -10.70690 -10.62552 -10.60154 -10.43845 -10.22501 -10.16301 -9.89690 -9.40439 -8.88274 -8.52924 -8.32359 -8.24769 -5.96931 -3.99539 3.36363 3.43548 3.52359 3.58846 3.85164 3.96336 4.26159 4.29345 4.32544 4.52451 4.54252 4.74217 4.83427 4.86407 5.02107 5.14370 5.29867 5.36310 5.36837 5.40082 5.45167 5.49067 5.52364 5.60617 5.70577 5.73383 5.75442 5.86528 5.97299 6.04949 6.12456 6.18687 6.40372 6.72931 6.93975 7.02833 7.13079 7.21865 7.56754 7.84116 8.06895 8.24371 8.55568 9.10056 9.35112 9.65850 11.10797 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.043455 B = 0.003137 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.196631 B = 8923.846395 C = 9234.056197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.550 6.550 14 N -0.742 5.742 15 C 0.129 3.871 16 C 0.081 3.919 17 H 0.062 0.938 18 C -0.146 4.146 19 C -0.095 4.095 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.130 4.130 24 C 0.077 3.923 25 O -0.368 6.368 26 H 0.013 0.987 27 H 0.092 0.908 28 H 0.030 0.970 29 H 0.259 0.741 30 H 0.398 0.602 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 1.545 23.976 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.426 6.426 14 N -0.396 5.396 15 C 0.005 3.995 16 C 0.023 3.977 17 H 0.080 0.920 18 C -0.184 4.184 19 C -0.132 4.132 20 C -0.119 4.119 21 C -0.161 4.161 22 C -0.180 4.180 23 C -0.167 4.167 24 C 0.000 4.000 25 O -0.286 6.286 26 H 0.032 0.968 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.232 0.768 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.068 0.932 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.456 0.810 23.601 23.742 hybrid contribution 0.103 0.163 -0.464 0.502 sum -2.353 0.974 23.137 23.277 Atomic orbital electron populations 1.21721 0.96502 0.99821 1.00873 1.18865 0.94188 0.96758 0.89415 0.93121 1.21211 1.30678 1.12701 0.89046 0.90757 1.24955 0.95198 0.95108 0.99096 1.69891 1.37341 1.23190 1.23314 0.86411 0.78592 0.79787 0.82540 1.19574 1.21093 1.21108 1.21950 0.78420 0.84261 0.84506 1.90519 1.38275 1.26986 1.86852 1.46181 1.55372 1.32707 1.05337 1.21193 0.98422 0.96888 0.83011 1.22325 0.81727 0.99087 0.94538 0.91999 1.22132 1.00857 1.01159 0.94268 1.21349 0.92844 1.00880 0.98152 1.22230 0.96003 0.98080 0.95549 1.22854 1.01287 0.96411 0.95547 1.22860 1.01887 0.96509 0.96717 1.22855 1.00984 0.96802 0.96101 1.22534 0.97758 0.95094 0.84640 1.88065 1.19218 1.73998 1.47352 0.96803 0.88973 0.95052 0.93106 0.76850 0.90872 0.91474 0.90599 0.90467 0.91517 0.91211 0.89947 0.91351 0.90344 0.91590 0.91415 0.89947 0.93235 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.87 37.15 0.33 -2.82 16 2 C 0.03 0.74 2.64 -92.93 -0.25 0.50 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.53 8.37 -34.44 -0.29 -14.82 16 5 H 0.07 2.29 6.75 -52.49 -0.35 1.94 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.52 12.35 7.15 -10.99 -0.08 12.28 16 13 O -0.55 -14.89 15.46 5.56 0.09 -14.80 16 14 N -0.74 -13.71 5.39 -60.29 -0.33 -14.04 16 15 C 0.13 2.00 5.34 -4.04 -0.02 1.98 16 16 C 0.08 0.97 2.61 -26.69 -0.07 0.90 16 17 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 18 C -0.15 -1.40 5.35 -26.51 -0.14 -1.54 16 19 C -0.09 -0.77 5.11 -26.63 -0.14 -0.90 16 20 C -0.12 -0.98 0.86 -154.36 -0.13 -1.11 16 21 C -0.12 -1.03 7.13 -26.10 -0.19 -1.21 16 22 C -0.14 -0.97 7.73 -25.84 -0.20 -1.17 16 23 C -0.13 -0.89 7.23 -26.11 -0.19 -1.08 16 24 C 0.08 0.75 6.02 37.03 0.22 0.98 16 25 O -0.37 -4.78 10.36 -35.23 -0.36 -5.15 16 26 H 0.01 0.27 7.56 -51.93 -0.39 -0.12 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.40 6.62 7.89 -40.82 -0.32 6.30 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 0.77 7.66 -51.93 -0.40 0.37 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.07 0.51 7.34 -51.93 -0.38 0.13 16 37 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 38 H 0.07 0.61 7.62 -51.93 -0.40 0.21 16 39 H 0.08 0.50 7.64 -51.93 -0.40 0.11 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 42 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 LS Contribution 345.49 15.07 5.21 5.21 Total: -1.00 -32.14 345.49 -8.59 -40.74 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.57 Total: 2.43 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.23 Total: -6.51 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.30 Total: -39.15 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.28 Total: -19.95 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.14 -8.59 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894525264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.347 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds