Wall clock time and date at job start Tue Mar 31 2020 05:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47186 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47137 * 120.00134 * 8 6 4 11 11 H 1.48499 * 109.47678 * 240.00198 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 H 1.09004 * 109.43130 * 59.91630 * 16 15 14 18 18 C 1.53071 * 109.43706 * 179.78494 * 16 15 14 19 19 C 1.53353 * 109.08446 * 179.47619 * 18 16 15 20 20 C 1.52857 * 108.74522 * 305.14227 * 19 18 16 21 21 C 1.53324 * 113.58499 * 184.26076 * 20 19 18 22 22 C 1.53861 * 86.95548 * 89.49246 * 21 20 19 23 23 C 1.53344 * 113.55755 * 282.25232 * 20 19 18 24 24 C 1.52755 * 112.67073 * 53.21860 * 20 19 18 25 25 O 1.42851 * 109.43558 * 300.00565 * 16 15 14 26 26 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 28 28 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 29 29 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 31 31 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 32 32 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 33 33 H 1.08993 * 109.53716 * 299.35663 * 18 16 15 34 34 H 1.08996 * 109.53211 * 59.59938 * 18 16 15 35 35 H 1.08998 * 109.59335 * 185.36860 * 19 18 16 36 36 H 1.09003 * 109.71580 * 64.99266 * 19 18 16 37 37 H 1.09002 * 113.63689 * 204.00858 * 21 20 19 38 38 H 1.08998 * 113.63808 * 334.97585 * 21 20 19 39 39 H 1.08998 * 113.60479 * 270.54208 * 22 21 20 40 40 H 1.09005 * 113.60127 * 139.67886 * 22 21 20 41 41 H 1.09006 * 113.63453 * 24.99702 * 23 20 19 42 42 H 1.09001 * 113.63605 * 155.96361 * 23 20 19 43 43 H 1.09002 * 109.52423 * 186.47235 * 24 20 19 44 44 H 1.08997 * 109.58605 * 66.29661 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1466 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6715 -0.2289 -4.9000 17 1 2.0347 0.7988 -4.9026 18 6 2.1814 -0.9516 -6.1493 19 6 1.6510 -0.2331 -7.3959 20 6 0.1280 -0.1443 -7.3009 21 6 -0.5297 0.4654 -8.5445 22 6 -0.6028 -0.9651 -9.1065 23 6 -0.5853 -1.4566 -7.6486 24 6 -0.3448 0.4801 -5.9894 25 8 0.2430 -0.2281 -4.8939 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7087 1.1612 3.4844 30 1 1.1446 0.5355 -2.5436 31 1 3.2755 -0.9477 -3.6550 32 1 1.8218 -1.9748 -3.6465 33 1 3.2713 -0.9398 -6.1578 34 1 1.8269 -1.9823 -6.1442 35 1 1.9294 -0.7946 -8.2876 36 1 2.0729 0.7705 -7.4493 37 1 -1.5063 0.9087 -8.3495 38 1 0.1301 1.1237 -9.1096 39 1 0.2800 -1.2560 -9.6757 40 1 -1.5346 -1.1817 -9.6289 41 1 0.0301 -2.3428 -7.4935 42 1 -1.5771 -1.5455 -7.2054 43 1 -1.4309 0.4140 -5.9252 44 1 -0.0406 1.5261 -5.9522 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894525265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:16 Heat of formation + Delta-G solvation = -82.995853 kcal Electronic energy + Delta-G solvation = -22589.906142 eV Core-core repulsion = 19314.065873 eV Total energy + Delta-G solvation = -3275.840269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76986 -38.74019 -37.46710 -34.16719 -33.62861 -32.79960 -30.63877 -29.52981 -26.92490 -25.97751 -25.05074 -24.14679 -22.93092 -21.81573 -21.21944 -19.24370 -18.43924 -16.73023 -16.42738 -16.11343 -15.84703 -15.68325 -15.13868 -14.60074 -14.35307 -14.22889 -14.05296 -13.53994 -13.23043 -12.89375 -12.68059 -12.65792 -12.53148 -12.02205 -11.74413 -11.41542 -11.36764 -11.31509 -11.23779 -10.95969 -10.70435 -10.61971 -10.59870 -10.43558 -10.22572 -10.15819 -9.89386 -9.40042 -8.87869 -8.52627 -8.31302 -8.24410 -5.96631 -3.99215 3.36523 3.43705 3.52442 3.58277 3.85749 3.97459 4.26509 4.29355 4.33161 4.52683 4.54578 4.74561 4.83385 4.86620 5.02197 5.14534 5.30188 5.36557 5.36804 5.40095 5.45435 5.49408 5.52371 5.60739 5.70572 5.73454 5.76040 5.86402 5.97563 6.05392 6.12820 6.18925 6.40890 6.73628 6.94735 7.03420 7.12139 7.23575 7.57371 7.84566 8.07353 8.25097 8.56474 9.10384 9.35768 9.66147 11.11070 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042486 B = 0.003165 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.875478 B = 8844.222837 C = 9167.304059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.550 6.550 14 N -0.741 5.741 15 C 0.130 3.870 16 C 0.081 3.919 17 H 0.062 0.938 18 C -0.146 4.146 19 C -0.095 4.095 20 C -0.118 4.118 21 C -0.130 4.130 22 C -0.142 4.142 23 C -0.124 4.124 24 C 0.077 3.923 25 O -0.367 6.367 26 H 0.030 0.970 27 H 0.092 0.908 28 H 0.013 0.987 29 H 0.259 0.741 30 H 0.398 0.602 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 1.494 -23.907 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.308 3.692 13 O -0.427 6.427 14 N -0.395 5.395 15 C 0.005 3.995 16 C 0.023 3.977 17 H 0.080 0.920 18 C -0.184 4.184 19 C -0.132 4.132 20 C -0.119 4.119 21 C -0.167 4.167 22 C -0.180 4.180 23 C -0.161 4.161 24 C 0.000 4.000 25 O -0.286 6.286 26 H 0.049 0.951 27 H 0.110 0.890 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.232 0.768 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.732 0.771 -23.526 23.696 hybrid contribution 0.110 0.143 0.448 0.483 sum -2.621 0.914 -23.078 23.244 Atomic orbital electron populations 1.21721 0.96492 0.99805 1.00881 1.18864 0.94189 0.96757 0.89406 0.93136 1.21212 1.30678 1.12695 0.89051 0.90759 1.24956 0.95199 0.95111 0.99093 1.69893 1.37304 1.23232 1.23302 0.86413 0.78590 0.79791 0.82545 1.19573 1.21115 1.21090 1.21955 0.78409 0.84273 0.84520 1.90520 1.38332 1.26976 1.86860 1.46157 1.55365 1.32710 1.05275 1.21197 0.98434 0.96786 0.83070 1.22322 0.81818 0.98931 0.94604 0.92026 1.22131 1.01233 1.00809 0.94240 1.21349 0.92886 1.00894 0.98094 1.22227 0.95890 0.98075 0.95662 1.22854 1.00881 0.96677 0.96328 1.22862 1.01867 0.96501 0.96753 1.22852 1.00772 0.96809 0.95661 1.22536 0.98175 0.94576 0.84735 1.88057 1.18803 1.75537 1.46197 0.95069 0.88976 0.96785 0.93110 0.76769 0.90925 0.91551 0.90478 0.90594 0.91236 0.91527 0.89945 0.91413 0.90353 0.91590 0.91352 0.89937 0.88847 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.86 37.16 0.33 -2.82 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.55 8.37 -34.44 -0.29 -14.84 16 5 H 0.07 2.29 6.75 -52.49 -0.35 1.94 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.76 11.32 55.43 0.63 -25.13 16 8 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 12 C 0.52 12.37 7.15 -10.98 -0.08 12.29 16 13 O -0.55 -14.91 15.46 5.55 0.09 -14.83 16 14 N -0.74 -13.74 5.34 -60.29 -0.32 -14.06 16 15 C 0.13 2.01 5.36 -4.04 -0.02 1.99 16 16 C 0.08 0.97 2.67 -26.70 -0.07 0.90 16 17 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 18 C -0.15 -1.40 5.35 -26.51 -0.14 -1.54 16 19 C -0.09 -0.77 5.11 -26.62 -0.14 -0.90 16 20 C -0.12 -0.98 0.86 -154.36 -0.13 -1.11 16 21 C -0.13 -0.89 7.23 -26.12 -0.19 -1.08 16 22 C -0.14 -0.97 7.73 -25.84 -0.20 -1.17 16 23 C -0.12 -1.03 7.13 -26.11 -0.19 -1.22 16 24 C 0.08 0.75 6.02 37.03 0.22 0.98 16 25 O -0.37 -4.77 10.16 -35.23 -0.36 -5.13 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.01 0.27 7.55 -51.93 -0.39 -0.12 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.40 6.69 7.76 -40.82 -0.32 6.37 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.78 7.67 -51.93 -0.40 0.38 16 35 H 0.07 0.50 7.34 -51.93 -0.38 0.12 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.53 8.10 -51.93 -0.42 0.10 16 38 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.08 0.51 7.64 -51.93 -0.40 0.11 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.61 7.62 -51.93 -0.40 0.21 16 42 H 0.08 0.71 8.03 -51.93 -0.42 0.29 16 43 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -32.15 345.17 -8.58 -40.73 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.57 Total: 2.48 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.23 Total: -6.51 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.31 Total: -39.19 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.27 Total: -19.96 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.15 -8.58 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894525265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.263 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds