Wall clock time and date at job start Tue Mar 31 2020 05:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47367 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.44122 * 304.92028 * 16 15 14 18 18 C 1.53082 * 109.44425 * 184.99764 * 16 15 14 19 19 C 1.53342 * 109.10228 * 180.52190 * 18 16 15 20 20 C 1.52850 * 108.73633 * 54.86860 * 19 18 16 21 21 C 1.53339 * 113.57532 * 175.75593 * 20 19 18 22 22 C 1.53870 * 86.94680 * 220.12203 * 21 20 19 23 23 C 1.53349 * 113.55047 * 77.76920 * 20 19 18 24 24 C 1.52756 * 112.68008 * 306.78028 * 20 19 18 25 25 O 1.42878 * 109.44227 * 64.80128 * 16 15 14 26 26 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 27 27 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 28 28 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 31 31 H 1.09009 * 109.46700 * 300.00334 * 15 14 12 32 32 H 1.08998 * 109.47265 * 60.00066 * 15 14 12 33 33 H 1.08998 * 109.53395 * 300.41578 * 18 16 15 34 34 H 1.09006 * 109.52597 * 60.55907 * 18 16 15 35 35 H 1.08990 * 109.59408 * 174.65029 * 19 18 16 36 36 H 1.09004 * 109.59283 * 295.09749 * 19 18 16 37 37 H 1.08997 * 113.63523 * 334.63298 * 21 20 19 38 38 H 1.08991 * 113.63584 * 105.61311 * 21 20 19 39 39 H 1.08997 * 113.59976 * 270.54721 * 22 21 20 40 40 H 1.08997 * 113.60129 * 139.67982 * 22 21 20 41 41 H 1.09005 * 113.63522 * 254.41231 * 23 20 19 42 42 H 1.08993 * 113.63885 * 25.29828 * 23 20 19 43 43 H 1.09004 * 109.52988 * 173.52768 * 24 20 19 44 44 H 1.08995 * 109.52861 * 293.74504 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 6 1.6852 -0.2189 -4.9000 17 1 0.5988 -0.1414 -4.8565 18 6 2.0900 -1.0101 -6.1464 19 6 1.5871 -0.2734 -7.3937 20 6 2.1151 1.1606 -7.3632 21 6 1.7623 1.9709 -8.6163 22 6 3.1817 2.5594 -8.5352 23 6 3.5859 1.2810 -7.7803 24 6 1.7886 1.8809 -6.0563 25 8 2.2526 1.0912 -4.9569 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7006 1.1552 3.4844 30 1 1.1493 0.5391 -2.5435 31 1 3.2846 -0.9410 -3.6510 32 1 1.8308 -1.9681 -3.6508 33 1 3.1758 -1.0960 -6.1868 34 1 1.6469 -2.0053 -6.1060 35 1 1.9517 -0.7783 -8.2882 36 1 0.4971 -0.2616 -7.3966 37 1 1.5939 1.3566 -9.5008 38 1 0.9745 2.7063 -8.4537 39 1 3.2455 3.4629 -7.9289 40 1 3.6666 2.6647 -9.5057 41 1 4.2634 1.4621 -6.9457 42 1 3.9227 0.4750 -8.4320 43 1 2.2836 2.8519 -6.0418 44 1 0.7104 2.0191 -5.9760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894525266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:18 Heat of formation + Delta-G solvation = -83.263249 kcal Electronic energy + Delta-G solvation = -22553.337471 eV Core-core repulsion = 19277.485607 eV Total energy + Delta-G solvation = -3275.851864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76839 -38.74510 -37.43872 -34.16616 -33.64155 -32.95649 -30.66414 -29.46629 -26.62342 -25.93110 -25.07288 -24.64514 -22.87614 -21.68618 -21.12183 -19.25465 -18.66357 -16.56321 -16.48176 -16.18404 -15.79543 -15.62294 -15.13821 -14.54960 -14.33152 -14.24695 -13.92009 -13.87555 -13.08679 -12.85081 -12.76964 -12.58276 -12.55777 -12.09876 -11.88651 -11.59337 -11.40110 -11.29827 -11.04772 -10.95050 -10.69335 -10.65575 -10.62738 -10.25857 -10.17486 -10.16461 -9.89842 -9.55346 -8.90509 -8.52987 -8.32445 -8.24960 -5.97023 -3.99727 3.37918 3.43197 3.50531 3.57384 3.85474 3.95724 4.24479 4.27819 4.35437 4.52467 4.56567 4.74490 4.82794 4.85741 5.02066 5.17910 5.28407 5.36081 5.37803 5.40423 5.43732 5.45356 5.54625 5.62327 5.72018 5.76578 5.80585 5.87081 5.97953 6.05427 6.12855 6.16186 6.39568 6.68884 6.90242 7.00258 7.11278 7.20772 7.55891 7.82665 8.06414 8.23698 8.55331 9.09494 9.34883 9.65625 11.10696 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039177 B = 0.003142 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.536976 B = 8909.480690 C = 9108.210530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.550 6.550 14 N -0.742 5.742 15 C 0.130 3.870 16 C 0.081 3.919 17 H 0.062 0.938 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.144 4.144 23 C -0.126 4.126 24 C 0.085 3.915 25 O -0.367 6.367 26 H 0.093 0.907 27 H 0.011 0.989 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.398 0.602 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.905 3.212 -23.729 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.426 6.426 14 N -0.396 5.396 15 C 0.005 3.995 16 C 0.023 3.977 17 H 0.080 0.920 18 C -0.184 4.184 19 C -0.141 4.141 20 C -0.119 4.119 21 C -0.167 4.167 22 C -0.181 4.181 23 C -0.164 4.164 24 C 0.008 3.992 25 O -0.286 6.286 26 H 0.111 0.889 27 H 0.030 0.970 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.331 2.648 -23.350 23.502 hybrid contribution -0.190 -0.101 0.430 0.481 sum -0.521 2.547 -22.920 23.067 Atomic orbital electron populations 1.21735 0.96639 0.99709 1.00878 1.18861 0.94084 0.96878 0.89404 0.93001 1.21168 1.30689 1.12811 0.89056 0.90805 1.24951 0.95163 0.95120 0.99083 1.69874 1.37201 1.23252 1.23424 0.86459 0.78402 0.80277 0.82108 1.20694 1.21344 1.19776 1.21947 0.78436 0.84233 0.84504 1.90521 1.38155 1.27106 1.86856 1.46181 1.55474 1.32611 1.05334 1.21190 0.99985 0.95338 0.82985 1.22342 0.97198 0.83547 0.94613 0.91959 1.22126 1.02651 0.99322 0.94309 1.21517 1.00442 0.94125 0.97980 1.22251 0.97671 0.96092 0.95886 1.22866 0.97332 0.99153 0.97350 1.22879 0.96695 0.97866 1.00652 1.22852 0.95691 0.97722 1.00093 1.22316 0.98854 0.93963 0.84036 1.88069 1.68318 1.25115 1.47063 0.88874 0.96970 0.95075 0.93037 0.76846 0.91453 0.90867 0.90639 0.90600 0.91359 0.91747 0.90004 0.91404 0.90117 0.91590 0.90877 0.90273 0.88715 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.86 37.16 0.33 -2.77 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.50 -14.56 8.38 -34.44 -0.29 -14.84 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.73 11.31 55.43 0.63 -25.10 16 8 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.52 12.35 7.15 -10.98 -0.08 12.27 16 13 O -0.55 -14.88 15.46 5.56 0.09 -14.79 16 14 N -0.74 -13.70 5.39 -60.30 -0.33 -14.03 16 15 C 0.13 2.01 5.34 -4.05 -0.02 1.99 16 16 C 0.08 0.97 2.61 -26.69 -0.07 0.90 16 17 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 18 C -0.15 -1.41 5.36 -26.51 -0.14 -1.55 16 19 C -0.10 -0.84 5.21 -26.63 -0.14 -0.98 16 20 C -0.12 -0.99 0.85 -154.36 -0.13 -1.12 16 21 C -0.13 -0.89 7.23 -26.10 -0.19 -1.08 16 22 C -0.14 -1.01 7.73 -25.83 -0.20 -1.21 16 23 C -0.13 -1.05 7.12 -26.10 -0.19 -1.23 16 24 C 0.09 0.83 5.93 37.03 0.22 1.05 16 25 O -0.37 -4.74 10.35 -35.23 -0.36 -5.10 16 26 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 27 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.40 6.61 7.89 -40.82 -0.32 6.29 16 31 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.50 8.03 -51.93 -0.42 0.08 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 39 H 0.08 0.56 7.64 -51.93 -0.40 0.16 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.08 0.61 8.02 -51.93 -0.42 0.20 16 43 H 0.09 0.86 7.34 -51.93 -0.38 0.48 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -31.99 346.38 -8.63 -40.62 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.62 Total: 2.49 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.24 Total: -6.55 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.30 Total: -39.12 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.28 Total: -19.89 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.99 -8.63 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894525266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.639 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds