Wall clock time and date at job start Tue Mar 31 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 O 1.21282 * 120.00038 * 119.99602 * 12 2 1 14 14 N 1.34779 * 120.00040 * 300.00473 * 12 2 1 15 15 C 1.46500 * 120.00169 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47368 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.43321 * 59.91000 * 16 15 14 18 18 C 1.53071 * 109.43889 * 179.78461 * 16 15 14 19 19 C 1.53345 * 109.08565 * 179.47186 * 18 16 15 20 20 C 1.52850 * 108.74753 * 305.14402 * 19 18 16 21 21 C 1.53332 * 113.58651 * 184.26445 * 20 19 18 22 22 C 1.53855 * 86.95658 * 89.48759 * 21 20 19 23 23 C 1.53357 * 113.55437 * 282.25055 * 20 19 18 24 24 C 1.52751 * 112.67532 * 53.21387 * 20 19 18 25 25 O 1.42858 * 109.43554 * 300.00049 * 16 15 14 26 26 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 27 27 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 29 29 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 30 30 H 0.96996 * 119.99844 * 359.97438 * 14 12 2 31 31 H 1.09004 * 109.46923 * 300.00119 * 15 14 12 32 32 H 1.09004 * 109.47042 * 59.99705 * 15 14 12 33 33 H 1.08998 * 109.53544 * 299.36051 * 18 16 15 34 34 H 1.09001 * 109.53253 * 59.59027 * 18 16 15 35 35 H 1.09001 * 109.59243 * 185.36275 * 19 18 16 36 36 H 1.08997 * 109.71610 * 64.99506 * 19 18 16 37 37 H 1.08997 * 113.63229 * 204.00987 * 21 20 19 38 38 H 1.09003 * 113.63313 * 334.97208 * 21 20 19 39 39 H 1.08999 * 113.60577 * 270.54070 * 22 21 20 40 40 H 1.09003 * 113.59878 * 139.67886 * 22 21 20 41 41 H 1.08993 * 113.63417 * 24.99661 * 23 20 19 42 42 H 1.08996 * 113.63286 * 155.96500 * 23 20 19 43 43 H 1.08997 * 109.52717 * 186.47134 * 24 20 19 44 44 H 1.08999 * 109.58115 * 66.29908 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1948 -0.9409 3.6507 16 6 1.6854 -0.2194 4.9000 17 1 0.5953 -0.2176 4.8987 18 6 2.1912 -0.9450 6.1492 19 6 1.6873 -0.2078 7.3959 20 6 2.1137 1.2572 7.3062 21 6 1.7549 2.0779 8.5508 22 6 3.1252 1.6664 9.1165 23 6 3.5878 1.4892 7.6599 24 6 1.6884 1.9152 5.9949 25 8 2.1629 1.1271 4.8992 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9026 -0.5282 -4.4376 30 1 1.1494 0.5388 2.5436 31 1 1.8311 -1.9685 3.6505 32 1 3.2848 -0.9413 3.6508 33 1 1.8153 -1.9681 6.1538 34 1 3.2812 -0.9560 6.1480 35 1 2.1199 -0.6605 8.2881 36 1 0.6002 -0.2697 7.4452 37 1 1.6647 3.1469 8.3582 38 1 0.9116 1.6749 9.1117 39 1 3.1018 0.7357 9.6834 40 1 3.6393 2.4707 9.6428 41 1 4.2174 0.6131 7.5048 42 1 4.0052 2.3952 7.2206 43 1 2.1144 2.9166 5.9348 44 1 0.6010 1.9787 5.9540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894525267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:21 Heat of formation + Delta-G solvation = -73.283991 kcal Electronic energy + Delta-G solvation = -22629.536305 eV Core-core repulsion = 19354.117174 eV Total energy + Delta-G solvation = -3275.419131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82689 -38.90600 -37.55343 -34.27005 -33.74012 -32.87120 -31.23081 -29.78512 -27.06353 -26.02325 -25.07356 -24.28515 -23.08239 -21.93400 -21.28638 -19.31914 -18.49968 -16.79585 -16.68354 -16.37740 -15.89200 -15.81229 -15.25804 -14.78318 -14.44621 -14.31529 -14.11554 -13.68230 -13.29126 -13.00570 -12.90306 -12.77574 -12.63236 -12.25737 -12.11742 -11.77951 -11.50534 -11.44404 -11.37754 -11.28881 -10.90671 -10.74233 -10.54005 -10.48428 -10.30193 -10.21470 -9.58197 -9.46803 -9.03482 -8.62111 -8.52865 -8.42973 -5.99715 -3.99352 3.27424 3.35990 3.40544 3.50490 3.69626 3.83434 4.21605 4.24455 4.27882 4.43084 4.50052 4.68515 4.75989 4.80533 4.96241 5.08756 5.23868 5.29952 5.31488 5.34445 5.40219 5.44499 5.46780 5.56533 5.65562 5.68791 5.70642 5.79562 5.84772 5.98556 6.03005 6.11471 6.14785 6.17866 6.39993 6.51219 6.79396 7.01214 7.12099 7.23335 7.61761 8.23292 8.62434 9.17070 9.23349 9.59852 11.13428 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035216 B = 0.003386 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.899474 B = 8267.575253 C = 8634.748906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.005 4.005 3 H 0.052 0.948 4 C -0.504 4.504 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.267 1.267 11 H -0.296 1.296 12 C 0.528 3.472 13 O -0.535 6.535 14 N -0.742 5.742 15 C 0.130 3.870 16 C 0.081 3.919 17 H 0.062 0.938 18 C -0.146 4.146 19 C -0.095 4.095 20 C -0.118 4.118 21 C -0.130 4.130 22 C -0.142 4.142 23 C -0.124 4.124 24 C 0.077 3.923 25 O -0.369 6.369 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.264 0.736 30 H 0.397 0.603 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.458 6.628 26.767 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.542 4.542 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.192 1.192 11 H -0.224 1.224 12 C 0.316 3.684 13 O -0.410 6.410 14 N -0.396 5.396 15 C 0.006 3.994 16 C 0.023 3.977 17 H 0.080 0.920 18 C -0.184 4.184 19 C -0.132 4.132 20 C -0.119 4.119 21 C -0.167 4.167 22 C -0.180 4.180 23 C -0.161 4.161 24 C 0.000 4.000 25 O -0.287 6.287 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.231 0.769 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.799 5.947 26.321 27.129 hybrid contribution -1.091 1.139 0.114 1.581 sum -3.889 7.086 26.435 27.643 Atomic orbital electron populations 1.22105 0.97430 1.01407 0.99157 1.19302 0.93131 0.97598 0.92650 0.93018 1.20968 1.31923 1.14034 0.87272 0.88889 1.24986 0.95885 0.96576 0.95764 1.69890 1.45637 1.40255 0.97831 0.86905 0.80648 0.83903 0.77048 1.20575 1.19203 1.22365 1.21241 0.78916 0.84264 0.83968 1.90574 1.37338 1.26485 1.86568 1.46107 1.55547 1.32645 1.05328 1.21224 1.00078 0.95373 0.82773 1.22327 0.97778 0.82951 0.94634 0.92004 1.22130 1.02491 0.99646 0.94164 1.21346 1.00777 0.92976 0.98136 1.22229 0.97801 0.96227 0.95607 1.22855 0.97664 0.99930 0.96301 1.22860 0.96907 1.01460 0.96749 1.22853 0.95305 1.02268 0.95673 1.22533 0.98255 0.94449 0.84761 1.88044 1.72473 1.21862 1.46352 0.93358 0.92423 0.94880 0.92633 0.76886 0.90683 0.91316 0.90406 0.90524 0.91176 0.91531 0.89964 0.91401 0.90321 0.91572 0.91309 0.89947 0.88849 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.57 37.16 0.32 -2.71 16 2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.33 16 3 H 0.05 1.23 7.20 -51.93 -0.37 0.85 16 4 C -0.50 -14.96 8.96 -34.44 -0.31 -15.27 16 5 H 0.09 3.14 7.00 -52.49 -0.37 2.77 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 8 Si 0.88 21.77 24.37 -169.99 -4.14 17.63 16 9 H -0.28 -6.61 6.87 56.52 0.39 -6.23 16 10 H -0.27 -6.14 6.53 56.52 0.37 -5.77 16 11 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 12 C 0.53 12.02 7.15 -10.99 -0.08 11.94 16 13 O -0.53 -14.28 15.46 5.56 0.09 -14.19 16 14 N -0.74 -12.83 5.34 -60.29 -0.32 -13.15 16 15 C 0.13 1.89 5.36 -4.04 -0.02 1.87 16 16 C 0.08 0.90 2.67 -26.70 -0.07 0.83 16 17 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 18 C -0.15 -1.31 5.35 -26.52 -0.14 -1.45 16 19 C -0.09 -0.72 5.11 -26.63 -0.14 -0.85 16 20 C -0.12 -0.92 0.86 -154.36 -0.13 -1.05 16 21 C -0.13 -0.83 7.23 -26.11 -0.19 -1.02 16 22 C -0.14 -0.92 7.73 -25.84 -0.20 -1.12 16 23 C -0.12 -0.97 7.13 -26.10 -0.19 -1.16 16 24 C 0.08 0.70 6.02 37.03 0.22 0.92 16 25 O -0.37 -4.47 10.16 -35.23 -0.36 -4.83 16 26 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.03 0.55 7.57 -51.93 -0.39 0.16 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.40 6.01 7.77 -40.82 -0.32 5.69 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.74 7.67 -51.93 -0.40 0.34 16 35 H 0.07 0.48 7.34 -51.93 -0.38 0.10 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 38 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 39 H 0.08 0.48 7.64 -51.93 -0.40 0.08 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.58 7.62 -51.93 -0.40 0.19 16 42 H 0.08 0.67 8.03 -51.93 -0.42 0.25 16 43 H 0.09 0.78 8.05 -51.93 -0.42 0.37 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -34.10 338.38 -7.52 -41.63 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.43 Total: 2.77 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.23 Total: -7.46 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.45 Total: -40.65 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.27 Total: -19.02 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.10 -7.52 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894525267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.657 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds