Wall clock time and date at job start Tue Mar 31 2020 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 O 1.21282 * 120.00038 * 119.99602 * 12 2 1 14 14 N 1.34779 * 120.00040 * 300.00473 * 12 2 1 15 15 C 1.46500 * 120.00169 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47368 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.43321 * 59.91000 * 16 15 14 18 18 C 1.53071 * 109.43889 * 179.78461 * 16 15 14 19 19 C 1.53345 * 109.08565 * 179.47186 * 18 16 15 20 20 C 1.52850 * 108.74753 * 305.14402 * 19 18 16 21 21 C 1.53332 * 113.58651 * 184.26445 * 20 19 18 22 22 C 1.53855 * 86.95658 * 89.48759 * 21 20 19 23 23 C 1.53357 * 113.55437 * 282.25055 * 20 19 18 24 24 C 1.52751 * 112.67532 * 53.21387 * 20 19 18 25 25 O 1.42858 * 109.43554 * 300.00049 * 16 15 14 26 26 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 27 27 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 29 29 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 30 30 H 0.96996 * 119.99844 * 359.97438 * 14 12 2 31 31 H 1.09004 * 109.46923 * 300.00119 * 15 14 12 32 32 H 1.09004 * 109.47042 * 59.99705 * 15 14 12 33 33 H 1.08998 * 109.53544 * 299.36051 * 18 16 15 34 34 H 1.09001 * 109.53253 * 59.59027 * 18 16 15 35 35 H 1.09001 * 109.59243 * 185.36275 * 19 18 16 36 36 H 1.08997 * 109.71610 * 64.99506 * 19 18 16 37 37 H 1.08997 * 113.63229 * 204.00987 * 21 20 19 38 38 H 1.09003 * 113.63313 * 334.97208 * 21 20 19 39 39 H 1.08999 * 113.60577 * 270.54070 * 22 21 20 40 40 H 1.09003 * 113.59878 * 139.67886 * 22 21 20 41 41 H 1.08993 * 113.63417 * 24.99661 * 23 20 19 42 42 H 1.08996 * 113.63286 * 155.96500 * 23 20 19 43 43 H 1.08997 * 109.52717 * 186.47134 * 24 20 19 44 44 H 1.08999 * 109.58115 * 66.29908 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1948 -0.9409 3.6507 16 6 1.6854 -0.2194 4.9000 17 1 0.5953 -0.2176 4.8987 18 6 2.1912 -0.9450 6.1492 19 6 1.6873 -0.2078 7.3959 20 6 2.1137 1.2572 7.3062 21 6 1.7549 2.0779 8.5508 22 6 3.1252 1.6664 9.1165 23 6 3.5878 1.4892 7.6599 24 6 1.6884 1.9152 5.9949 25 8 2.1629 1.1271 4.8992 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9026 -0.5282 -4.4376 30 1 1.1494 0.5388 2.5436 31 1 1.8311 -1.9685 3.6505 32 1 3.2848 -0.9413 3.6508 33 1 1.8153 -1.9681 6.1538 34 1 3.2812 -0.9560 6.1480 35 1 2.1199 -0.6605 8.2881 36 1 0.6002 -0.2697 7.4452 37 1 1.6647 3.1469 8.3582 38 1 0.9116 1.6749 9.1117 39 1 3.1018 0.7357 9.6834 40 1 3.6393 2.4707 9.6428 41 1 4.2174 0.6131 7.5048 42 1 4.0052 2.3952 7.2206 43 1 2.1144 2.9166 5.9348 44 1 0.6010 1.9787 5.9540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894525267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:20 Heat of formation + Delta-G solvation = -97.935554 kcal Electronic energy + Delta-G solvation = -22630.605277 eV Core-core repulsion = 19354.117174 eV Total energy + Delta-G solvation = -3276.488103 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51979 -40.56881 -38.42525 -35.81579 -35.61024 -33.84331 -33.19065 -30.71971 -28.01620 -27.09647 -26.56893 -25.35086 -24.17950 -23.20216 -22.08860 -20.97245 -19.17730 -18.79897 -17.97883 -17.54524 -17.04252 -16.60249 -16.49122 -16.32950 -16.00009 -15.38917 -14.95801 -14.87210 -14.72312 -14.41259 -14.05504 -13.86584 -13.61676 -13.55500 -13.34987 -13.19668 -12.77467 -12.58693 -12.45590 -12.16894 -12.08184 -12.02796 -11.87524 -11.46869 -11.44860 -11.21281 -11.06037 -10.92188 -10.76934 -10.48303 -10.14923 -9.99273 -8.26511 -6.34345 1.33753 1.41104 1.52227 1.87639 2.34574 2.36954 2.73592 3.07113 3.61589 3.65449 3.68100 3.87010 3.94644 4.00289 4.10244 4.16598 4.20105 4.44114 4.48961 4.51984 4.57642 4.63921 4.67292 4.72666 4.77637 4.80859 4.87828 4.88896 4.93096 5.03759 5.06485 5.09072 5.10725 5.18932 5.34081 5.45920 5.47632 5.53616 5.56802 5.60146 6.27475 6.29757 6.69079 6.86495 7.27140 7.51328 8.91452 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035216 B = 0.003386 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.899474 B = 8267.575253 C = 8634.748906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 H 0.066 0.934 4 C -0.523 4.523 5 H 0.029 0.971 6 C 0.005 3.995 7 N -0.954 5.954 8 Si 0.962 3.038 9 H -0.258 1.258 10 H -0.232 1.232 11 H -0.299 1.299 12 C 0.525 3.475 13 O -0.588 6.588 14 N -0.717 5.717 15 C 0.127 3.873 16 C 0.091 3.909 17 H 0.080 0.920 18 C -0.144 4.144 19 C -0.091 4.091 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.138 4.138 23 C -0.132 4.132 24 C 0.072 3.928 25 O -0.394 6.394 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.267 0.733 30 H 0.413 0.587 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 9.187 29.462 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 H 0.084 0.916 4 C -0.561 4.561 5 H 0.047 0.953 6 C -0.191 4.191 7 N -0.594 5.594 8 Si 0.786 3.214 9 H -0.184 1.184 10 H -0.156 1.156 11 H -0.227 1.227 12 C 0.314 3.686 13 O -0.467 6.467 14 N -0.370 5.370 15 C 0.003 3.997 16 C 0.033 3.967 17 H 0.098 0.902 18 C -0.182 4.182 19 C -0.128 4.128 20 C -0.120 4.120 21 C -0.159 4.159 22 C -0.175 4.175 23 C -0.169 4.169 24 C -0.004 4.004 25 O -0.313 6.313 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.249 0.751 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.487 8.538 29.093 30.812 hybrid contribution -0.139 0.267 -0.690 0.753 sum -5.625 8.805 28.403 30.264 Atomic orbital electron populations 1.22002 0.94262 1.01713 1.01529 1.19253 0.95595 0.97302 0.90892 0.91637 1.21124 1.31658 1.12849 0.90460 0.95308 1.26057 0.97498 1.00789 0.94745 1.70085 1.47718 1.42875 0.98730 0.85674 0.78831 0.78907 0.77963 1.18359 1.15557 1.22698 1.21072 0.78527 0.83632 0.85390 1.90561 1.39863 1.28874 1.87439 1.45816 1.54252 1.32521 1.04433 1.21400 0.99084 0.96052 0.83185 1.22222 0.98441 0.82755 0.93276 0.90237 1.22109 1.01808 1.00304 0.93985 1.21346 1.01477 0.92552 0.97472 1.22246 0.97518 0.96592 0.95625 1.22830 0.97781 1.00086 0.95250 1.22850 0.96937 1.01917 0.95795 1.22886 0.95467 1.01514 0.97075 1.22719 0.98999 0.94286 0.84418 1.87997 1.73186 1.22261 1.47904 0.93571 0.93359 0.89669 0.92379 0.75060 0.90474 0.93245 0.89319 0.91756 0.90252 0.90348 0.89377 0.90467 0.89823 0.91095 0.92501 0.90547 0.88457 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 8.57 71.98 0.62 -4.74 16 2 C -0.01 -0.42 2.23 -12.29 -0.03 -0.45 16 3 H 0.07 2.94 7.20 -2.39 -0.02 2.93 16 4 C -0.52 -32.21 8.96 25.60 0.23 -31.98 16 5 H 0.03 2.09 7.00 -2.91 -0.02 2.07 16 6 C 0.01 0.32 5.45 84.66 0.46 0.78 16 7 N -0.95 -62.44 13.96 21.45 0.30 -62.15 16 8 Si 0.96 43.99 24.37 68.60 1.67 45.66 16 9 H -0.26 -10.93 6.87 99.48 0.68 -10.25 16 10 H -0.23 -9.29 6.53 99.48 0.65 -8.64 16 11 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 12 C 0.53 24.03 7.15 87.66 0.63 24.66 16 13 O -0.59 -32.89 15.46 -3.04 -0.05 -32.94 16 14 N -0.72 -23.67 5.34 -463.05 -2.47 -26.14 16 15 C 0.13 3.59 5.36 86.38 0.46 4.05 16 16 C 0.09 1.82 2.67 30.62 0.08 1.90 16 17 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 18 C -0.14 -2.31 5.35 30.73 0.16 -2.15 16 19 C -0.09 -1.12 5.11 30.66 0.16 -0.96 16 20 C -0.12 -1.55 0.86 -52.08 -0.04 -1.59 16 21 C -0.12 -1.19 7.23 30.99 0.22 -0.96 16 22 C -0.14 -1.46 7.73 31.17 0.24 -1.22 16 23 C -0.13 -1.89 7.13 31.00 0.22 -1.67 16 24 C 0.07 1.11 6.02 71.90 0.43 1.55 16 25 O -0.39 -8.71 10.16 -148.98 -1.51 -10.22 16 26 H 0.05 1.82 3.27 -2.39 -0.01 1.81 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.08 2.42 7.57 -2.39 -0.02 2.40 16 29 H 0.27 16.16 8.31 -92.70 -0.77 15.39 16 30 H 0.41 11.09 7.77 -92.71 -0.72 10.37 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.19 7.67 -2.39 -0.02 1.18 16 35 H 0.08 0.86 7.34 -2.39 -0.02 0.84 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 38 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 39 H 0.08 0.81 7.64 -2.39 -0.02 0.79 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.93 7.62 -2.39 -0.02 0.92 16 42 H 0.08 1.16 8.03 -2.39 -0.02 1.14 16 43 H 0.10 1.40 8.05 -2.39 -0.02 1.39 16 44 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -79.43 338.38 1.97 -77.46 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.18 Total: 21.10 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 3.85 Total: -12.78 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -2.17 Total: -88.28 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.56 Total: -43.15 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Total: -79.43 1.97 -77.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894525267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.475 kcal (2) G-P(sol) polarization free energy of solvation -79.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds