Wall clock time and date at job start Tue Mar 31 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47538 * 2 1 4 4 C 1.46497 * 120.00047 * 94.80639 * 3 2 1 5 5 C 1.50705 * 109.46719 * 264.09723 * 4 3 2 6 6 H 1.07993 * 120.00077 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99445 * 180.27286 * 5 4 3 8 8 N 1.31509 * 120.00117 * 359.72515 * 7 5 4 9 9 Si 1.86800 * 119.99715 * 179.72228 * 7 5 4 10 10 H 1.48498 * 109.47055 * 60.00172 * 9 7 5 11 11 H 1.48500 * 109.47001 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47402 * 300.00344 * 9 7 5 13 13 C 1.34779 * 119.99888 * 274.80747 * 3 2 1 14 14 O 1.21279 * 120.00062 * 3.95213 * 13 3 2 15 15 C 1.50696 * 119.99697 * 183.95707 * 13 3 2 16 16 H 1.09003 * 109.55750 * 26.76293 * 15 13 3 17 17 C 1.53160 * 109.55578 * 266.45016 * 15 13 3 18 18 C 1.53044 * 109.40896 * 181.52882 * 17 15 13 19 19 O 1.43040 * 109.44680 * 59.32482 * 18 17 15 20 20 C 1.42579 * 113.84999 * 301.27211 * 19 18 17 21 21 C 1.53392 * 113.62851 * 188.21983 * 20 19 18 22 22 C 1.53849 * 86.98155 * 89.43529 * 21 20 19 23 23 C 1.53423 * 113.56179 * 286.14523 * 20 19 18 24 24 C 1.52815 * 112.93755 * 57.10227 * 20 19 18 25 25 H 1.09006 * 109.46847 * 299.99911 * 1 2 3 26 26 H 1.08999 * 109.46965 * 59.99473 * 1 2 3 27 27 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46847 * 240.00089 * 2 1 3 29 29 H 1.08999 * 109.46965 * 120.00527 * 2 1 3 30 30 H 1.08994 * 109.47379 * 144.09812 * 4 3 2 31 31 H 1.09004 * 109.47163 * 24.09370 * 4 3 2 32 32 H 0.97003 * 119.99800 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47685 * 301.50734 * 17 15 13 34 34 H 1.08999 * 109.47878 * 61.54362 * 17 15 13 35 35 H 1.09004 * 109.47689 * 299.32861 * 18 17 15 36 36 H 1.09005 * 109.48166 * 179.32156 * 18 17 15 37 37 H 1.08999 * 113.62961 * 203.95721 * 21 20 19 38 38 H 1.08997 * 113.63135 * 334.91425 * 21 20 19 39 39 H 1.09011 * 113.60347 * 270.60370 * 22 21 20 40 40 H 1.08994 * 113.68489 * 139.74183 * 22 21 20 41 41 H 1.08999 * 113.63357 * 25.02999 * 23 20 19 42 42 H 1.09005 * 113.62916 * 155.89745 * 23 20 19 43 43 H 1.08997 * 109.56753 * 186.22299 * 24 20 19 44 44 H 1.09003 * 109.65191 * 65.93890 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3629 2.0363 1.2642 5 6 1.1896 2.8518 1.7433 6 1 0.2787 2.8796 1.1638 7 6 1.2813 3.5673 2.9184 8 7 2.3907 3.5338 3.6238 9 14 -0.1703 4.5844 3.5082 10 1 -1.3429 3.6979 3.7186 11 1 0.1809 5.2532 4.7867 12 1 -0.5026 5.6110 2.4880 13 6 2.1509 2.0491 -1.1631 14 8 1.7985 1.5328 -2.2024 15 6 2.7369 3.4374 -1.1722 16 1 3.4036 3.5576 -0.3183 17 6 1.6089 4.4705 -1.0940 18 6 2.2052 5.8792 -1.1419 19 8 2.9389 6.0447 -2.3586 20 6 3.9986 5.1055 -2.5251 21 6 4.9045 5.4072 -3.7256 22 6 5.7513 6.2632 -2.7679 23 6 5.2112 5.3834 -1.6272 24 6 3.5224 3.6544 -2.4709 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.2219 2.6898 1.1126 31 1 2.6086 1.2803 2.0101 32 1 2.4553 4.0375 4.4503 33 1 0.9316 4.3336 -1.9371 34 1 1.0600 4.3395 -0.1615 35 1 2.8736 6.0200 -0.2924 36 1 1.4025 6.6154 -1.0985 37 1 5.4288 4.5316 -4.1083 38 1 4.4137 5.9843 -4.5092 39 1 5.4270 7.3023 -2.7086 40 1 6.8253 6.1635 -2.9249 41 1 4.9668 5.9413 -0.7232 42 1 5.8193 4.5008 -1.4288 43 1 4.3835 2.9866 -2.4926 44 1 2.8785 3.4477 -3.3258 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896861451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:57 Heat of formation + Delta-G solvation = -73.844388 kcal Electronic energy + Delta-G solvation = -23999.831138 eV Core-core repulsion = 20724.387707 eV Total energy + Delta-G solvation = -3275.443432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46391 -38.90802 -35.91129 -35.20565 -33.44960 -32.64268 -30.25739 -29.36196 -27.10223 -25.66973 -25.33646 -23.10323 -22.86211 -22.60798 -20.64520 -18.79167 -18.02159 -16.62905 -16.54299 -15.90146 -15.79825 -15.10876 -14.69170 -14.46588 -14.27849 -14.01026 -13.68831 -13.14657 -13.04942 -12.73917 -12.65117 -12.28870 -12.22432 -11.90326 -11.62685 -11.43270 -11.24471 -11.18035 -11.01461 -10.90204 -10.70114 -10.56889 -10.50442 -10.47632 -10.18290 -9.98893 -9.74037 -9.66224 -9.21116 -8.73720 -8.55241 -7.72637 -6.22863 -4.29076 3.19368 3.25546 3.27189 3.41979 3.90020 3.94387 4.28662 4.69388 4.77085 4.94808 5.04906 5.09559 5.28123 5.31345 5.49021 5.54528 5.64185 5.77248 5.78909 5.82858 5.84747 5.91021 5.98459 6.00116 6.03886 6.08358 6.18479 6.25485 6.25900 6.28202 6.44826 6.46995 6.53589 6.68041 6.76162 6.81518 6.87760 7.16714 7.54687 7.59053 7.72821 8.02454 8.33443 8.75929 9.04743 9.37629 10.83692 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.007016 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.923875 B = 3990.050758 C = 5119.473444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.120 3.880 3 N -0.597 5.597 4 C 0.237 3.763 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.890 5.890 9 Si 0.890 3.110 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.524 3.476 14 O -0.575 6.575 15 C -0.098 4.098 16 H 0.099 0.901 17 C -0.145 4.145 18 C 0.065 3.935 19 O -0.362 6.362 20 C 0.098 3.902 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.165 4.165 24 C -0.116 4.116 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.266 0.734 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 2.143 -7.858 9.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.004 4.004 3 N -0.327 5.327 4 C 0.117 3.883 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.312 3.688 14 O -0.457 6.457 15 C -0.119 4.119 16 H 0.117 0.883 17 C -0.183 4.183 18 C -0.011 4.011 19 O -0.281 6.281 20 C 0.058 3.942 21 C -0.162 4.162 22 C -0.172 4.172 23 C -0.203 4.203 24 C -0.154 4.154 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.053 2.070 -8.312 9.477 hybrid contribution -0.835 0.348 0.957 1.317 sum 3.218 2.418 -7.355 8.384 Atomic orbital electron populations 1.22084 0.96517 1.00687 1.02820 1.21209 0.94466 0.83503 1.01183 1.48302 1.63081 1.13043 1.08289 1.19473 0.96438 0.93131 0.79286 1.21421 0.99915 1.28702 1.07053 0.91973 1.24913 0.95909 0.96514 0.96281 1.69903 1.25883 1.41633 1.15346 0.86673 0.82794 0.80505 0.78274 1.20132 1.21132 1.19920 1.20381 0.78133 0.87233 0.83062 1.90567 1.52376 1.69987 1.32724 1.21216 0.98457 0.92882 0.99317 0.88342 1.22154 0.97711 0.93476 1.04912 1.22579 0.95090 0.96878 0.86524 1.87825 1.45467 1.53865 1.40991 1.22150 0.86505 0.88765 0.96791 1.22939 0.96524 1.00390 0.96370 1.22779 0.99028 0.98944 0.96433 1.23499 0.98033 1.00574 0.98191 1.21899 1.00230 0.95058 0.98255 0.91493 0.92835 0.93126 0.91850 0.91155 0.94494 0.94657 0.92455 0.91749 0.87537 0.92551 0.88944 0.89049 0.90753 0.90052 0.91677 0.90797 0.89416 0.91254 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.21 37.16 0.38 -2.51 16 2 C 0.12 2.22 6.09 -4.04 -0.02 2.19 16 3 N -0.60 -12.46 2.48 -175.06 -0.43 -12.90 16 4 C 0.24 5.41 5.00 -5.19 -0.03 5.38 16 5 C -0.53 -13.04 7.52 -34.44 -0.26 -13.30 16 6 H 0.06 1.56 7.38 -52.49 -0.39 1.17 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -23.53 13.29 55.43 0.74 -22.80 16 9 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.52 10.99 6.61 -10.99 -0.07 10.92 16 14 O -0.58 -13.15 15.84 5.56 0.09 -13.07 16 15 C -0.10 -1.83 1.96 -91.53 -0.18 -2.01 16 16 H 0.10 1.92 5.83 -51.93 -0.30 1.62 16 17 C -0.14 -2.67 5.35 -26.63 -0.14 -2.81 16 18 C 0.07 1.08 6.73 37.18 0.25 1.33 16 19 O -0.36 -5.97 10.45 -35.23 -0.37 -6.33 16 20 C 0.10 1.46 1.03 -90.29 -0.09 1.37 16 21 C -0.12 -1.54 7.47 -26.09 -0.19 -1.74 16 22 C -0.13 -1.57 8.02 -25.85 -0.21 -1.78 16 23 C -0.17 -2.24 7.11 -26.07 -0.19 -2.43 16 24 C -0.12 -1.92 4.28 -26.66 -0.11 -2.04 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 29 H 0.07 1.20 7.79 -51.93 -0.40 0.80 16 30 H 0.04 0.88 5.94 -51.93 -0.31 0.57 16 31 H 0.04 0.85 7.79 -51.93 -0.40 0.45 16 32 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.11 2.18 5.70 -51.93 -0.30 1.89 16 35 H 0.06 0.94 7.21 -51.93 -0.37 0.56 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.06 7.26 -51.93 -0.38 0.68 16 42 H 0.09 1.13 8.02 -51.93 -0.42 0.71 16 43 H 0.07 1.07 8.04 -51.93 -0.42 0.66 16 44 H 0.08 1.41 7.68 -51.93 -0.40 1.01 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -27.44 343.56 -8.21 -35.65 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.42 Total: 5.29 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -0.97 Total: -5.82 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.30 Total: -35.69 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.28 Total: -19.40 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.44 -8.21 -35.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896861451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.195 kcal (2) G-P(sol) polarization free energy of solvation -27.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds