Wall clock time and date at job start Tue Mar 31 2020 05:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47538 * 2 1 4 4 C 1.46497 * 120.00047 * 94.80639 * 3 2 1 5 5 C 1.50705 * 109.46719 * 264.09723 * 4 3 2 6 6 H 1.07993 * 120.00077 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99445 * 180.27286 * 5 4 3 8 8 N 1.31509 * 120.00117 * 359.72515 * 7 5 4 9 9 Si 1.86800 * 119.99715 * 179.72228 * 7 5 4 10 10 H 1.48498 * 109.47055 * 60.00172 * 9 7 5 11 11 H 1.48500 * 109.47001 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47402 * 300.00344 * 9 7 5 13 13 C 1.34779 * 119.99888 * 274.80747 * 3 2 1 14 14 O 1.21279 * 120.00062 * 3.95213 * 13 3 2 15 15 C 1.50696 * 119.99697 * 183.95707 * 13 3 2 16 16 H 1.09003 * 109.55750 * 26.76293 * 15 13 3 17 17 C 1.53160 * 109.55578 * 266.45016 * 15 13 3 18 18 C 1.53044 * 109.40896 * 181.52882 * 17 15 13 19 19 O 1.43040 * 109.44680 * 59.32482 * 18 17 15 20 20 C 1.42579 * 113.84999 * 301.27211 * 19 18 17 21 21 C 1.53392 * 113.62851 * 188.21983 * 20 19 18 22 22 C 1.53849 * 86.98155 * 89.43529 * 21 20 19 23 23 C 1.53423 * 113.56179 * 286.14523 * 20 19 18 24 24 C 1.52815 * 112.93755 * 57.10227 * 20 19 18 25 25 H 1.09006 * 109.46847 * 299.99911 * 1 2 3 26 26 H 1.08999 * 109.46965 * 59.99473 * 1 2 3 27 27 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46847 * 240.00089 * 2 1 3 29 29 H 1.08999 * 109.46965 * 120.00527 * 2 1 3 30 30 H 1.08994 * 109.47379 * 144.09812 * 4 3 2 31 31 H 1.09004 * 109.47163 * 24.09370 * 4 3 2 32 32 H 0.97003 * 119.99800 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47685 * 301.50734 * 17 15 13 34 34 H 1.08999 * 109.47878 * 61.54362 * 17 15 13 35 35 H 1.09004 * 109.47689 * 299.32861 * 18 17 15 36 36 H 1.09005 * 109.48166 * 179.32156 * 18 17 15 37 37 H 1.08999 * 113.62961 * 203.95721 * 21 20 19 38 38 H 1.08997 * 113.63135 * 334.91425 * 21 20 19 39 39 H 1.09011 * 113.60347 * 270.60370 * 22 21 20 40 40 H 1.08994 * 113.68489 * 139.74183 * 22 21 20 41 41 H 1.08999 * 113.63357 * 25.02999 * 23 20 19 42 42 H 1.09005 * 113.62916 * 155.89745 * 23 20 19 43 43 H 1.08997 * 109.56753 * 186.22299 * 24 20 19 44 44 H 1.09003 * 109.65191 * 65.93890 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3629 2.0363 1.2642 5 6 1.1896 2.8518 1.7433 6 1 0.2787 2.8796 1.1638 7 6 1.2813 3.5673 2.9184 8 7 2.3907 3.5338 3.6238 9 14 -0.1703 4.5844 3.5082 10 1 -1.3429 3.6979 3.7186 11 1 0.1809 5.2532 4.7867 12 1 -0.5026 5.6110 2.4880 13 6 2.1509 2.0491 -1.1631 14 8 1.7985 1.5328 -2.2024 15 6 2.7369 3.4374 -1.1722 16 1 3.4036 3.5576 -0.3183 17 6 1.6089 4.4705 -1.0940 18 6 2.2052 5.8792 -1.1419 19 8 2.9389 6.0447 -2.3586 20 6 3.9986 5.1055 -2.5251 21 6 4.9045 5.4072 -3.7256 22 6 5.7513 6.2632 -2.7679 23 6 5.2112 5.3834 -1.6272 24 6 3.5224 3.6544 -2.4709 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.2219 2.6898 1.1126 31 1 2.6086 1.2803 2.0101 32 1 2.4553 4.0375 4.4503 33 1 0.9316 4.3336 -1.9371 34 1 1.0600 4.3395 -0.1615 35 1 2.8736 6.0200 -0.2924 36 1 1.4025 6.6154 -1.0985 37 1 5.4288 4.5316 -4.1083 38 1 4.4137 5.9843 -4.5092 39 1 5.4270 7.3023 -2.7086 40 1 6.8253 6.1635 -2.9249 41 1 4.9668 5.9413 -0.7232 42 1 5.8193 4.5008 -1.4288 43 1 4.3835 2.9866 -2.4926 44 1 2.8785 3.4477 -3.3258 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896861451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:56 Heat of formation + Delta-G solvation = -87.912402 kcal Electronic energy + Delta-G solvation = -24000.441173 eV Core-core repulsion = 20724.387707 eV Total energy + Delta-G solvation = -3276.053466 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.80304 -40.43944 -37.12083 -36.94510 -34.99113 -34.46634 -31.84684 -30.67110 -28.97648 -26.76960 -26.68504 -24.86863 -24.24542 -24.05686 -21.95929 -20.00591 -19.67625 -18.54158 -18.14717 -17.36530 -17.06772 -16.61502 -16.27783 -15.90711 -15.81169 -15.37292 -14.98520 -14.58546 -14.49933 -14.35415 -14.06155 -14.02229 -13.54319 -13.37567 -13.22114 -13.03324 -12.77683 -12.66656 -12.58745 -12.42822 -12.15771 -11.89894 -11.75186 -11.72567 -11.68861 -11.61789 -11.52037 -11.02108 -10.62564 -10.52170 -10.15310 -9.47854 -8.18128 -6.29482 1.41782 1.44165 1.49942 1.72892 2.29998 2.44824 2.70954 3.12715 3.56142 3.62862 3.68531 3.86671 3.92740 3.98351 4.12949 4.17256 4.31439 4.39495 4.41708 4.48453 4.54371 4.63304 4.69197 4.78328 4.81892 4.86424 4.88973 4.94237 5.00331 5.03087 5.08453 5.09004 5.17637 5.19590 5.30410 5.36290 5.40551 5.45255 5.68721 5.88279 6.08964 6.32963 6.55869 6.83481 7.31319 7.43295 8.87545 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.007016 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.923875 B = 3990.050758 C = 5119.473444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.112 3.888 3 N -0.600 5.600 4 C 0.251 3.749 5 C -0.530 4.530 6 H 0.053 0.947 7 C 0.029 3.971 8 N -0.917 5.917 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.519 3.481 14 O -0.595 6.595 15 C -0.094 4.094 16 H 0.089 0.911 17 C -0.139 4.139 18 C 0.071 3.929 19 O -0.368 6.368 20 C 0.083 3.917 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.167 4.167 24 C -0.109 4.109 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.023 0.977 32 H 0.267 0.733 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.594 2.617 -8.483 9.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 N -0.330 5.330 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.071 0.929 7 C -0.172 4.172 8 N -0.556 5.556 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.308 3.692 14 O -0.478 6.478 15 C -0.115 4.115 16 H 0.107 0.893 17 C -0.177 4.177 18 C -0.005 4.005 19 O -0.287 6.287 20 C 0.043 3.957 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.205 4.205 24 C -0.147 4.147 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.461 2.537 -8.943 10.311 hybrid contribution -0.971 0.117 1.139 1.501 sum 3.490 2.654 -7.804 8.952 Atomic orbital electron populations 1.21982 0.95814 1.02345 1.00938 1.21434 0.95052 0.82418 1.02200 1.48347 1.63021 1.13981 1.07619 1.19170 0.95677 0.92451 0.79683 1.21494 0.99858 1.28630 1.06875 0.92868 1.25495 0.97827 0.97410 0.96436 1.69985 1.27352 1.42548 1.15748 0.85855 0.80149 0.79354 0.77920 1.20153 1.20935 1.19166 1.20781 0.77782 0.87939 0.82687 1.90547 1.53377 1.70648 1.33219 1.21200 0.98443 0.91603 1.00274 0.89288 1.22062 0.97432 0.94955 1.03266 1.22531 0.95496 0.95795 0.86700 1.87823 1.45966 1.54199 1.40728 1.22439 0.86623 0.87335 0.99287 1.22989 0.95711 1.01223 0.95546 1.22733 1.00289 0.98342 0.94652 1.23530 0.97571 1.01272 0.98140 1.21867 0.99908 0.96777 0.96129 0.93211 0.94648 0.89758 0.91215 0.89697 0.95357 0.95918 0.92427 0.92460 0.89764 0.92900 0.87253 0.87367 0.90458 0.90162 0.89402 0.92015 0.88733 0.90225 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 10.21 71.98 0.73 -4.57 16 2 C 0.11 4.06 6.09 86.38 0.53 4.59 16 3 N -0.60 -25.19 2.48 -826.16 -2.05 -27.24 16 4 C 0.25 11.61 5.00 85.64 0.43 12.04 16 5 C -0.53 -26.17 7.52 25.60 0.19 -25.98 16 6 H 0.05 2.70 7.38 -2.91 -0.02 2.68 16 7 C 0.03 1.46 5.46 84.66 0.46 1.92 16 8 N -0.92 -48.63 13.29 21.45 0.28 -48.35 16 9 Si 0.94 40.37 29.54 68.60 2.03 42.39 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 13 C 0.52 21.94 6.61 87.66 0.58 22.52 16 14 O -0.60 -27.30 15.84 -3.03 -0.05 -27.34 16 15 C -0.09 -3.55 1.96 -11.38 -0.02 -3.57 16 16 H 0.09 3.52 5.83 -2.39 -0.01 3.51 16 17 C -0.14 -5.19 5.35 30.66 0.16 -5.02 16 18 C 0.07 2.30 6.73 72.00 0.48 2.78 16 19 O -0.37 -11.72 10.45 -148.98 -1.56 -13.28 16 20 C 0.08 2.37 1.03 -10.58 -0.01 2.36 16 21 C -0.12 -2.61 7.47 31.01 0.23 -2.37 16 22 C -0.12 -2.54 8.02 31.16 0.25 -2.29 16 23 C -0.17 -4.28 7.11 31.02 0.22 -4.06 16 24 C -0.11 -3.53 4.28 30.64 0.13 -3.40 16 25 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.07 2.46 7.63 -2.38 -0.02 2.44 16 29 H 0.08 2.82 7.79 -2.39 -0.02 2.80 16 30 H 0.03 1.37 5.94 -2.39 -0.01 1.36 16 31 H 0.02 1.11 7.79 -2.39 -0.02 1.09 16 32 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.08 3.52 5.70 -2.39 -0.01 3.50 16 35 H 0.05 1.74 7.21 -2.38 -0.02 1.73 16 36 H 0.11 3.13 8.14 -2.38 -0.02 3.11 16 37 H 0.11 2.04 8.09 -2.39 -0.02 2.02 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.72 7.26 -2.39 -0.02 1.70 16 42 H 0.09 2.27 8.02 -2.38 -0.02 2.25 16 43 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 44 H 0.06 2.28 7.68 -2.39 -0.02 2.26 16 Total: -1.00 -57.62 343.56 3.99 -53.63 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.97 Total: 25.24 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 4.37 Total: -5.06 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -1.77 Total: -75.58 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.60 Total: -40.62 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.39 kcal Total: -57.62 3.99 -53.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896861451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.283 kcal (2) G-P(sol) polarization free energy of solvation -57.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds