Wall clock time and date at job start Tue Mar 31 2020 05:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46834 * 2 1 4 4 C 1.46497 * 120.00220 * 264.90661 * 3 2 1 5 5 C 1.50695 * 109.47400 * 275.62163 * 4 3 2 6 6 H 1.08002 * 120.00070 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00174 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99985 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00078 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47305 * 89.99678 * 9 7 5 11 11 H 1.48507 * 109.47110 * 209.99909 * 9 7 5 12 12 H 1.48498 * 109.47106 * 329.99419 * 9 7 5 13 13 C 1.34776 * 120.00087 * 84.90820 * 3 2 1 14 14 O 1.21281 * 119.99839 * 4.99272 * 13 3 2 15 15 C 1.50700 * 120.00352 * 184.71668 * 13 3 2 16 16 H 1.09002 * 109.55073 * 306.76211 * 15 13 3 17 17 C 1.53155 * 109.55140 * 66.95912 * 15 13 3 18 18 C 1.53048 * 109.38962 * 178.47502 * 17 15 13 19 19 O 1.43039 * 109.45061 * 300.66870 * 18 17 15 20 20 C 1.42580 * 113.85534 * 58.74573 * 19 18 17 21 21 C 1.53404 * 113.61822 * 171.83444 * 20 19 18 22 22 C 1.53851 * 86.96950 * 220.08185 * 21 20 19 23 23 C 1.53420 * 113.58302 * 73.89475 * 20 19 18 24 24 C 1.52840 * 113.00375 * 302.96337 * 20 19 18 25 25 H 1.09000 * 109.47346 * 59.99511 * 1 2 3 26 26 H 1.08997 * 109.46809 * 180.02562 * 1 2 3 27 27 H 1.09012 * 109.46884 * 299.99594 * 1 2 3 28 28 H 1.08999 * 109.46984 * 240.00678 * 2 1 3 29 29 H 1.09001 * 109.47178 * 119.99725 * 2 1 3 30 30 H 1.09000 * 109.46949 * 35.62180 * 4 3 2 31 31 H 1.08999 * 109.47226 * 155.62209 * 4 3 2 32 32 H 0.97001 * 119.99810 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.48487 * 298.45087 * 17 15 13 34 34 H 1.08996 * 109.48062 * 58.49943 * 17 15 13 35 35 H 1.08998 * 109.47313 * 60.66804 * 18 17 15 36 36 H 1.09008 * 109.47265 * 180.67569 * 18 17 15 37 37 H 1.08997 * 113.63493 * 334.60026 * 21 20 19 38 38 H 1.09001 * 113.63213 * 105.56678 * 21 20 19 39 39 H 1.09004 * 113.60849 * 270.59121 * 22 21 20 40 40 H 1.09004 * 113.67822 * 139.73437 * 22 21 20 41 41 H 1.08995 * 113.62954 * 254.47504 * 23 20 19 42 42 H 1.08997 * 113.62670 * 25.34350 * 23 20 19 43 43 H 1.09006 * 109.48603 * 293.99059 * 24 20 19 44 44 H 1.08995 * 109.65151 * 173.64888 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3686 2.0344 -1.2637 5 6 3.7822 1.6733 -1.6408 6 1 4.3619 1.0227 -1.0028 7 6 4.3355 2.1734 -2.8004 8 7 5.5695 1.8587 -3.1292 9 14 3.3332 3.2993 -3.9036 10 1 3.5406 4.7104 -3.4902 11 1 3.7686 3.1272 -5.3129 12 1 1.8935 2.9552 -3.7849 13 6 2.1452 2.0512 1.1626 14 8 1.9424 1.4833 2.2149 15 6 2.5452 3.5041 1.1553 16 1 3.4620 3.6272 0.5786 17 6 1.4273 4.3403 0.5256 18 6 1.8210 5.8190 0.5546 19 8 2.0368 6.2280 1.9082 20 6 3.0498 5.4835 2.5810 21 6 3.4161 6.0500 3.9587 22 6 4.8798 5.7276 3.6115 23 6 4.4731 5.8390 2.1320 24 6 2.7765 3.9798 2.5943 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6872 1.7006 -2.0462 31 1 2.2882 3.1153 -1.1485 32 1 5.9586 2.2103 -3.9452 33 1 1.2747 4.0249 -0.5066 34 1 0.5054 4.1983 1.0895 35 1 2.7367 5.9626 -0.0189 36 1 1.0210 6.4167 0.1175 37 1 3.2159 7.1167 4.0599 38 1 3.0250 5.4638 4.7902 39 1 5.1872 4.7239 3.9053 40 1 5.5846 6.4959 3.9294 41 1 4.9317 5.0831 1.4946 42 1 4.5645 6.8467 1.7269 43 1 1.8884 3.7769 3.1930 44 1 3.6325 3.4555 3.0189 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896861452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:59 Heat of formation + Delta-G solvation = -66.674762 kcal Electronic energy + Delta-G solvation = -23945.693184 eV Core-core repulsion = 20670.560650 eV Total energy + Delta-G solvation = -3275.132533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65125 -39.02300 -36.24285 -35.36668 -33.64352 -32.67049 -30.51838 -29.34681 -27.68926 -25.72788 -25.21154 -23.74782 -22.67429 -22.51491 -20.90186 -18.37998 -18.23677 -17.07785 -16.68285 -16.31471 -15.93343 -15.24918 -15.05576 -14.76374 -14.26616 -14.21833 -13.46923 -13.26664 -13.10761 -12.97363 -12.79190 -12.50532 -12.23544 -12.06714 -11.83229 -11.72884 -11.55705 -11.15511 -11.06016 -10.99416 -10.83577 -10.67583 -10.59246 -10.45042 -10.32460 -10.29276 -9.90626 -9.62618 -9.35115 -8.93669 -8.73843 -7.77560 -6.26243 -4.27729 3.11523 3.19474 3.21663 3.28572 3.77646 3.88575 4.21149 4.63649 4.64714 4.83868 4.85241 5.00507 5.05767 5.08297 5.24957 5.32931 5.51345 5.63810 5.66968 5.73238 5.75464 5.79626 5.80203 5.82567 5.91151 5.93709 5.99576 6.03651 6.09560 6.20382 6.24902 6.35271 6.37902 6.41179 6.48472 6.53387 6.59685 6.68852 7.32133 7.41168 7.43129 8.09264 8.38781 8.78064 8.89729 9.32898 10.86495 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.007107 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.857718 B = 3939.001678 C = 4900.836151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.589 5.589 4 C 0.198 3.802 5 C -0.541 4.541 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.525 3.475 14 O -0.569 6.569 15 C -0.107 4.107 16 H 0.109 0.891 17 C -0.153 4.153 18 C 0.063 3.937 19 O -0.370 6.370 20 C 0.092 3.908 21 C -0.120 4.120 22 C -0.139 4.139 23 C -0.166 4.166 24 C -0.100 4.100 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.267 0.733 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 7.118 7.506 12.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.318 5.318 4 C 0.077 3.923 5 C -0.580 4.580 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.527 5.527 9 Si 0.693 3.307 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.188 1.188 13 C 0.313 3.687 14 O -0.449 6.449 15 C -0.128 4.128 16 H 0.127 0.873 17 C -0.190 4.190 18 C -0.013 4.013 19 O -0.289 6.289 20 C 0.053 3.947 21 C -0.158 4.158 22 C -0.176 4.176 23 C -0.203 4.203 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.513 6.978 7.959 12.428 hybrid contribution -0.155 0.280 -1.161 1.204 sum -6.668 7.258 6.799 11.973 Atomic orbital electron populations 1.22121 0.96919 1.01392 1.01737 1.21249 0.93129 0.83598 1.02868 1.47907 1.63037 1.13318 1.07584 1.20074 0.97036 0.93807 0.81397 1.21384 0.96620 1.31746 1.08229 0.90422 1.24874 0.94743 0.95915 0.97171 1.69892 1.13597 1.44360 1.24890 0.86985 0.81161 0.81739 0.80793 1.19663 1.20770 1.18800 1.20307 0.76521 0.88549 0.83330 1.90586 1.52943 1.70180 1.31220 1.21287 1.01086 0.92329 0.98078 0.87342 1.22348 0.98371 0.95628 1.02692 1.22534 1.00961 0.94234 0.83600 1.87884 1.57670 1.58181 1.25156 1.22742 0.86785 0.91500 0.93692 1.22987 0.95713 1.01759 0.95292 1.22713 0.96170 1.02198 0.96530 1.23550 0.96864 1.02680 0.97244 1.21623 1.03508 0.92691 0.95947 0.92828 0.92240 0.92803 0.90079 0.91081 0.95130 0.94008 0.92329 0.89210 0.91009 0.92634 0.88924 0.89394 0.90803 0.89754 0.91038 0.90517 0.89562 0.90309 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.20 37.16 0.38 -2.12 16 2 C 0.11 2.10 6.14 -4.04 -0.02 2.07 16 3 N -0.59 -11.99 2.47 -175.06 -0.43 -12.42 16 4 C 0.20 4.28 3.69 -5.20 -0.02 4.26 16 5 C -0.54 -14.10 9.93 -34.44 -0.34 -14.44 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 7 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.89 -25.56 13.96 55.43 0.77 -24.79 16 9 Si 0.87 19.30 27.47 -169.99 -4.67 14.64 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 13 C 0.52 10.66 6.94 -10.99 -0.08 10.58 16 14 O -0.57 -12.60 15.52 5.56 0.09 -12.52 16 15 C -0.11 -1.89 1.67 -91.53 -0.15 -2.04 16 16 H 0.11 2.08 7.16 -51.93 -0.37 1.71 16 17 C -0.15 -2.38 4.99 -26.63 -0.13 -2.51 16 18 C 0.06 0.90 6.74 37.18 0.25 1.15 16 19 O -0.37 -5.59 10.53 -35.23 -0.37 -5.96 16 20 C 0.09 1.32 1.16 -90.28 -0.10 1.21 16 21 C -0.12 -1.44 7.50 -26.08 -0.20 -1.63 16 22 C -0.14 -1.60 7.73 -25.85 -0.20 -1.80 16 23 C -0.17 -2.23 6.90 -26.07 -0.18 -2.41 16 24 C -0.10 -1.60 3.87 -26.65 -0.10 -1.70 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 28 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 29 H 0.07 1.34 7.51 -51.93 -0.39 0.95 16 30 H 0.03 0.66 7.17 -51.93 -0.37 0.28 16 31 H 0.04 0.86 3.40 -51.93 -0.18 0.68 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.09 1.42 5.41 -51.93 -0.28 1.14 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 36 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 39 H 0.08 0.97 7.61 -51.93 -0.40 0.58 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.13 7.57 -51.93 -0.39 0.74 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 44 H 0.08 1.29 7.31 -51.93 -0.38 0.91 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -29.53 340.11 -7.87 -37.40 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.38 Total: 5.97 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.00 Total: -7.44 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.34 Total: -37.21 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.28 Total: -18.48 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.67 Total: 14.64 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.53 -7.87 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896861452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.278 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds