Wall clock time and date at job start Tue Mar 31 2020 05:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46834 * 2 1 4 4 C 1.46497 * 120.00220 * 264.90661 * 3 2 1 5 5 C 1.50695 * 109.47400 * 275.62163 * 4 3 2 6 6 H 1.08002 * 120.00070 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00174 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99985 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00078 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47305 * 89.99678 * 9 7 5 11 11 H 1.48507 * 109.47110 * 209.99909 * 9 7 5 12 12 H 1.48498 * 109.47106 * 329.99419 * 9 7 5 13 13 C 1.34776 * 120.00087 * 84.90820 * 3 2 1 14 14 O 1.21281 * 119.99839 * 4.99272 * 13 3 2 15 15 C 1.50700 * 120.00352 * 184.71668 * 13 3 2 16 16 H 1.09002 * 109.55073 * 306.76211 * 15 13 3 17 17 C 1.53155 * 109.55140 * 66.95912 * 15 13 3 18 18 C 1.53048 * 109.38962 * 178.47502 * 17 15 13 19 19 O 1.43039 * 109.45061 * 300.66870 * 18 17 15 20 20 C 1.42580 * 113.85534 * 58.74573 * 19 18 17 21 21 C 1.53404 * 113.61822 * 171.83444 * 20 19 18 22 22 C 1.53851 * 86.96950 * 220.08185 * 21 20 19 23 23 C 1.53420 * 113.58302 * 73.89475 * 20 19 18 24 24 C 1.52840 * 113.00375 * 302.96337 * 20 19 18 25 25 H 1.09000 * 109.47346 * 59.99511 * 1 2 3 26 26 H 1.08997 * 109.46809 * 180.02562 * 1 2 3 27 27 H 1.09012 * 109.46884 * 299.99594 * 1 2 3 28 28 H 1.08999 * 109.46984 * 240.00678 * 2 1 3 29 29 H 1.09001 * 109.47178 * 119.99725 * 2 1 3 30 30 H 1.09000 * 109.46949 * 35.62180 * 4 3 2 31 31 H 1.08999 * 109.47226 * 155.62209 * 4 3 2 32 32 H 0.97001 * 119.99810 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.48487 * 298.45087 * 17 15 13 34 34 H 1.08996 * 109.48062 * 58.49943 * 17 15 13 35 35 H 1.08998 * 109.47313 * 60.66804 * 18 17 15 36 36 H 1.09008 * 109.47265 * 180.67569 * 18 17 15 37 37 H 1.08997 * 113.63493 * 334.60026 * 21 20 19 38 38 H 1.09001 * 113.63213 * 105.56678 * 21 20 19 39 39 H 1.09004 * 113.60849 * 270.59121 * 22 21 20 40 40 H 1.09004 * 113.67822 * 139.73437 * 22 21 20 41 41 H 1.08995 * 113.62954 * 254.47504 * 23 20 19 42 42 H 1.08997 * 113.62670 * 25.34350 * 23 20 19 43 43 H 1.09006 * 109.48603 * 293.99059 * 24 20 19 44 44 H 1.08995 * 109.65151 * 173.64888 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3686 2.0344 -1.2637 5 6 3.7822 1.6733 -1.6408 6 1 4.3619 1.0227 -1.0028 7 6 4.3355 2.1734 -2.8004 8 7 5.5695 1.8587 -3.1292 9 14 3.3332 3.2993 -3.9036 10 1 3.5406 4.7104 -3.4902 11 1 3.7686 3.1272 -5.3129 12 1 1.8935 2.9552 -3.7849 13 6 2.1452 2.0512 1.1626 14 8 1.9424 1.4833 2.2149 15 6 2.5452 3.5041 1.1553 16 1 3.4620 3.6272 0.5786 17 6 1.4273 4.3403 0.5256 18 6 1.8210 5.8190 0.5546 19 8 2.0368 6.2280 1.9082 20 6 3.0498 5.4835 2.5810 21 6 3.4161 6.0500 3.9587 22 6 4.8798 5.7276 3.6115 23 6 4.4731 5.8390 2.1320 24 6 2.7765 3.9798 2.5943 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6872 1.7006 -2.0462 31 1 2.2882 3.1153 -1.1485 32 1 5.9586 2.2103 -3.9452 33 1 1.2747 4.0249 -0.5066 34 1 0.5054 4.1983 1.0895 35 1 2.7367 5.9626 -0.0189 36 1 1.0210 6.4167 0.1175 37 1 3.2159 7.1167 4.0599 38 1 3.0250 5.4638 4.7902 39 1 5.1872 4.7239 3.9053 40 1 5.5846 6.4959 3.9294 41 1 4.9317 5.0831 1.4946 42 1 4.5645 6.8467 1.7269 43 1 1.8884 3.7769 3.1930 44 1 3.6325 3.4555 3.0189 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896861452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:59 Heat of formation + Delta-G solvation = -83.961761 kcal Electronic energy + Delta-G solvation = -23946.442804 eV Core-core repulsion = 20670.560650 eV Total energy + Delta-G solvation = -3275.882154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.92734 -40.47930 -37.36390 -37.04225 -35.03085 -34.60794 -32.03767 -30.53680 -29.52913 -26.74719 -26.53468 -24.94217 -24.45827 -23.87014 -22.15840 -19.82233 -19.53653 -19.08019 -18.12187 -17.59957 -17.29360 -16.66546 -16.37353 -16.29833 -15.83600 -15.45485 -14.83971 -14.74682 -14.53856 -14.44514 -14.22515 -13.92432 -13.55503 -13.35335 -13.26690 -13.22723 -12.76219 -12.66445 -12.50141 -12.25436 -12.19942 -12.10944 -11.92112 -11.87762 -11.72661 -11.62399 -11.51734 -11.09735 -10.82226 -10.63974 -10.28036 -9.47498 -8.32210 -6.40247 1.38159 1.40255 1.49687 1.65993 2.22943 2.32733 2.79608 3.01513 3.45419 3.51480 3.59787 3.77017 3.81914 3.86050 4.04219 4.09139 4.25255 4.35177 4.36916 4.45577 4.48041 4.54781 4.59274 4.70970 4.76313 4.77724 4.81889 4.84176 4.89309 4.96484 4.99495 5.00876 5.04622 5.08774 5.20342 5.26256 5.33237 5.41264 5.44344 5.70165 6.14471 6.29874 6.59101 6.65822 7.19086 7.30499 8.84340 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.007107 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.857718 B = 3939.001678 C = 4900.836151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.107 3.893 3 N -0.594 5.594 4 C 0.208 3.792 5 C -0.545 4.545 6 H 0.024 0.976 7 C 0.019 3.981 8 N -0.943 5.943 9 Si 0.936 3.064 10 H -0.255 1.255 11 H -0.286 1.286 12 H -0.234 1.234 13 C 0.517 3.483 14 O -0.591 6.591 15 C -0.105 4.105 16 H 0.089 0.911 17 C -0.147 4.147 18 C 0.063 3.937 19 O -0.375 6.375 20 C 0.085 3.915 21 C -0.112 4.112 22 C -0.132 4.132 23 C -0.168 4.168 24 C -0.093 4.093 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.269 0.731 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 9.256 7.206 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 N -0.324 5.324 4 C 0.086 3.914 5 C -0.584 4.584 6 H 0.043 0.957 7 C -0.180 4.180 8 N -0.582 5.582 9 Si 0.757 3.243 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.157 1.157 13 C 0.307 3.693 14 O -0.474 6.474 15 C -0.126 4.126 16 H 0.107 0.893 17 C -0.185 4.185 18 C -0.014 4.014 19 O -0.294 6.294 20 C 0.045 3.955 21 C -0.149 4.149 22 C -0.170 4.170 23 C -0.206 4.206 24 C -0.132 4.132 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.646 9.104 7.679 14.718 hybrid contribution 0.594 -0.519 -1.012 1.283 sum -8.053 8.585 6.668 13.528 Atomic orbital electron populations 1.22003 0.93950 1.03186 1.01651 1.21415 0.95538 0.82600 1.02060 1.48018 1.62976 1.14084 1.07314 1.19933 0.94303 0.94993 0.82155 1.21525 0.98472 1.30740 1.07616 0.95743 1.25823 0.95772 0.97605 0.98797 1.70064 1.15997 1.46349 1.25813 0.85887 0.80736 0.79871 0.77779 1.17879 1.21149 1.15712 1.20828 0.75942 0.89640 0.82916 1.90563 1.54009 1.70952 1.31857 1.21286 1.01021 0.91073 0.99224 0.89301 1.22332 0.97483 0.96332 1.02344 1.22656 1.01846 0.93415 0.83440 1.87887 1.57825 1.58115 1.25540 1.22835 0.87007 0.90195 0.95434 1.22994 0.95455 1.02511 0.93931 1.22705 0.96665 1.02720 0.94863 1.23571 0.96372 1.02427 0.98212 1.21549 1.02706 0.94296 0.94605 0.91908 0.89575 0.93701 0.90481 0.92359 0.93761 0.92033 0.92235 0.89137 0.90538 0.92956 0.86023 0.88007 0.90188 0.90221 0.88926 0.92733 0.88606 0.91045 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 10.20 71.98 0.73 -3.59 16 2 C 0.11 3.91 6.14 86.38 0.53 4.44 16 3 N -0.59 -24.31 2.47 -826.16 -2.04 -26.35 16 4 C 0.21 8.81 3.69 85.63 0.32 9.13 16 5 C -0.55 -29.12 9.93 25.60 0.25 -28.87 16 6 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 7 C 0.02 1.01 5.47 84.65 0.46 1.48 16 8 N -0.94 -55.81 13.96 21.45 0.30 -55.51 16 9 Si 0.94 38.63 27.47 68.60 1.88 40.51 16 10 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 11 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.23 -8.53 6.54 99.48 0.65 -7.88 16 13 C 0.52 21.28 6.94 87.66 0.61 21.89 16 14 O -0.59 -26.71 15.52 -3.03 -0.05 -26.76 16 15 C -0.10 -3.71 1.67 -11.38 -0.02 -3.73 16 16 H 0.09 3.50 7.16 -2.39 -0.02 3.48 16 17 C -0.15 -4.32 4.99 30.66 0.15 -4.17 16 18 C 0.06 1.61 6.74 72.00 0.49 2.10 16 19 O -0.37 -10.45 10.53 -148.98 -1.57 -12.01 16 20 C 0.08 2.31 1.16 -10.57 -0.01 2.30 16 21 C -0.11 -2.44 7.50 31.02 0.23 -2.20 16 22 C -0.13 -2.84 7.73 31.16 0.24 -2.60 16 23 C -0.17 -4.37 6.90 31.02 0.21 -4.15 16 24 C -0.09 -2.99 3.87 30.65 0.12 -2.87 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.04 1.37 8.14 -2.38 -0.02 1.36 16 28 H 0.08 2.84 8.03 -2.39 -0.02 2.82 16 29 H 0.06 2.26 7.51 -2.39 -0.02 2.24 16 30 H 0.04 1.79 7.17 -2.39 -0.02 1.77 16 31 H 0.06 2.41 3.40 -2.39 -0.01 2.40 16 32 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.09 2.63 5.41 -2.38 -0.01 2.61 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.39 7.84 -2.39 -0.02 1.37 16 36 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 39 H 0.08 1.78 7.61 -2.39 -0.02 1.77 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.64 7.57 -2.39 -0.02 1.62 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.07 2.37 7.87 -2.38 -0.02 2.36 16 44 H 0.07 2.33 7.31 -2.39 -0.02 2.31 16 Total: -1.00 -65.61 340.11 3.76 -61.85 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.91 Total: 29.13 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 4.32 Total: -10.85 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.74 Total: -81.86 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.62 Total: -38.78 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.88 Total: 40.51 kcal Total: -65.61 3.76 -61.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896861452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.116 kcal (2) G-P(sol) polarization free energy of solvation -65.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds