Wall clock time and date at job start Tue Mar 31 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46892 * 2 1 4 4 C 1.50692 * 109.47344 * 239.99857 * 2 1 3 5 5 H 1.08004 * 120.00019 * 240.00371 * 4 2 1 6 6 C 1.37875 * 120.00600 * 59.99819 * 4 2 1 7 7 N 1.31522 * 119.99320 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00641 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46961 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47257 * 119.99936 * 8 6 4 11 11 H 1.48504 * 109.47054 * 240.00391 * 8 6 4 12 12 N 1.46498 * 109.47052 * 119.99697 * 2 1 3 13 13 C 1.46499 * 120.00241 * 54.85663 * 12 2 1 14 14 C 1.34782 * 119.99921 * 234.85809 * 12 2 1 15 15 O 1.21289 * 119.99733 * 184.34317 * 14 12 2 16 16 C 1.50698 * 120.00093 * 4.34869 * 14 12 2 17 17 H 1.09000 * 109.55201 * 317.72105 * 16 14 12 18 18 C 1.53152 * 109.55548 * 77.92940 * 16 14 12 19 19 C 1.53044 * 109.40017 * 178.47598 * 18 16 14 20 20 O 1.43050 * 109.44053 * 300.66411 * 19 18 16 21 21 C 1.42574 * 113.86345 * 58.73617 * 20 19 18 22 22 C 1.53400 * 113.62076 * 171.83301 * 21 20 19 23 23 C 1.53849 * 86.97739 * 220.08760 * 22 21 20 24 24 C 1.53419 * 113.57664 * 73.90436 * 21 20 19 25 25 C 1.52816 * 112.92763 * 302.91580 * 21 20 19 26 26 H 1.09000 * 109.47602 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47389 * 300.00714 * 1 2 3 28 28 H 1.09003 * 109.47105 * 59.99846 * 1 2 3 29 29 H 0.97002 * 119.99958 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47260 * 264.67680 * 13 12 2 31 31 H 1.09003 * 109.46647 * 24.67889 * 13 12 2 32 32 H 1.08997 * 109.47158 * 144.67252 * 13 12 2 33 33 H 1.09003 * 109.48299 * 298.44788 * 18 16 14 34 34 H 1.08998 * 109.48726 * 58.48167 * 18 16 14 35 35 H 1.08991 * 109.48142 * 60.65796 * 19 18 16 36 36 H 1.09003 * 109.47439 * 180.67596 * 19 18 16 37 37 H 1.09000 * 113.63366 * 334.61086 * 22 21 20 38 38 H 1.09007 * 113.62869 * 105.57010 * 22 21 20 39 39 H 1.09001 * 113.60270 * 270.60053 * 23 22 21 40 40 H 1.09002 * 113.60406 * 139.73220 * 23 22 21 41 41 H 1.09003 * 113.62974 * 254.47064 * 24 21 20 42 42 H 1.08996 * 113.63765 * 25.34449 * 24 21 20 43 43 H 1.08995 * 109.55904 * 294.08728 * 25 21 20 44 44 H 1.09000 * 109.55954 * 173.75349 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5869 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.5739 -2.0560 1.4865 14 6 2.8763 -0.0696 2.0297 15 8 3.3419 -0.6677 2.9766 16 6 3.2572 1.3678 1.7852 17 1 3.4319 1.5229 0.7205 18 6 2.1259 2.2855 2.2581 19 6 2.5320 3.7453 2.0432 20 8 3.7272 4.0203 2.7795 21 6 4.8305 3.1926 2.4184 22 6 6.1555 3.6187 3.0633 23 6 6.8217 3.2960 1.7145 24 6 5.4521 3.5552 1.0635 25 6 4.5310 1.7018 2.5704 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7095 1.1617 -3.4844 30 1 0.7282 -2.0246 2.1735 31 1 1.2716 -2.5443 0.5600 32 1 2.3914 -2.6150 1.9418 33 1 1.2220 2.0719 1.6875 34 1 1.9364 2.1128 3.3175 35 1 2.7103 3.9206 0.9823 36 1 1.7325 4.3998 2.3905 37 1 6.1930 4.6755 3.3274 38 1 6.4757 2.9664 3.8758 39 1 7.1568 2.2623 1.6295 40 1 7.5870 4.0153 1.4226 41 1 5.2065 2.8519 0.2678 42 1 5.2939 4.5941 0.7741 43 1 4.3829 1.4649 3.6239 44 1 5.3650 1.1201 2.1776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896883539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:13 Heat of formation + Delta-G solvation = -70.315818 kcal Electronic energy + Delta-G solvation = -23974.079835 eV Core-core repulsion = 20698.789413 eV Total energy + Delta-G solvation = -3275.290421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59340 -38.90361 -36.18325 -35.59809 -33.37960 -32.68854 -29.30398 -29.19006 -27.04468 -25.71570 -25.35288 -24.14405 -23.61667 -21.58227 -20.93823 -18.38883 -18.06528 -16.76635 -16.55332 -16.25812 -15.68260 -15.08808 -14.91444 -14.61262 -14.42668 -14.09934 -13.44522 -13.18517 -12.80938 -12.76087 -12.65663 -12.28124 -11.96263 -11.77025 -11.58001 -11.36114 -11.20264 -11.10110 -11.03063 -10.97978 -10.75267 -10.72061 -10.61692 -10.34404 -10.27878 -10.18132 -9.85480 -9.37248 -9.30108 -8.85416 -8.57448 -7.65873 -6.22838 -4.31331 3.17032 3.26113 3.29069 3.36355 3.90584 3.94720 4.28064 4.65743 4.67528 4.86416 4.88638 5.07846 5.14056 5.14880 5.31932 5.37291 5.66496 5.69786 5.74858 5.81355 5.82583 5.93839 5.94537 6.06546 6.08710 6.13175 6.18120 6.20050 6.35549 6.37723 6.42198 6.45817 6.52423 6.62534 6.69578 6.86254 7.17204 7.36539 7.47588 7.62582 7.82755 8.07387 8.40830 8.72348 8.99751 9.37424 10.81477 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.006040 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.950568 B = 4634.843110 C = 5189.122302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.251 3.749 3 H 0.057 0.943 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.591 5.591 13 C 0.095 3.905 14 C 0.516 3.484 15 O -0.575 6.575 16 C -0.106 4.106 17 H 0.104 0.896 18 C -0.143 4.143 19 C 0.065 3.935 20 O -0.371 6.371 21 C 0.094 3.906 22 C -0.121 4.121 23 C -0.139 4.139 24 C -0.165 4.165 25 C -0.102 4.102 26 H 0.033 0.967 27 H 0.013 0.987 28 H 0.095 0.905 29 H 0.264 0.736 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.601 5.513 6.350 9.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.150 3.850 3 H 0.074 0.926 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.321 5.321 13 C -0.049 4.049 14 C 0.304 3.696 15 O -0.457 6.457 16 C -0.127 4.127 17 H 0.122 0.878 18 C -0.181 4.181 19 C -0.011 4.011 20 O -0.290 6.290 21 C 0.054 3.946 22 C -0.158 4.158 23 C -0.176 4.176 24 C -0.202 4.202 25 C -0.140 4.140 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.736 5.442 6.805 9.918 hybrid contribution 0.032 -0.741 -1.321 1.515 sum 4.768 4.702 5.485 8.656 Atomic orbital electron populations 1.22122 0.97909 1.00015 1.00819 1.19128 0.91570 0.93496 0.80780 0.92577 1.21420 1.31910 1.13357 0.90169 0.92036 1.24879 0.94731 0.94949 0.98985 1.69862 1.36210 1.22596 1.23899 0.86457 0.78730 0.79759 0.82640 1.19740 1.20820 1.20836 1.48254 1.44048 1.14816 1.24964 1.21378 0.98598 0.84060 1.00847 1.20374 0.78704 0.88469 0.82089 1.90578 1.55678 1.67676 1.31751 1.21295 0.96063 0.92738 1.02567 0.87832 1.22116 0.98542 0.95006 1.02426 1.22523 0.86931 0.95240 0.96442 1.87882 1.19621 1.58226 1.63244 1.22707 0.85938 0.90602 0.95358 1.22992 0.93264 1.02199 0.97350 1.22715 0.96570 1.02006 0.96359 1.23543 0.96406 1.02492 0.97803 1.21645 0.97150 0.93302 1.01899 0.94789 0.96842 0.88691 0.92598 0.94282 0.90564 0.92434 0.89636 0.91132 0.92568 0.88907 0.89378 0.90828 0.89826 0.91065 0.90653 0.89525 0.90061 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.89 37.15 0.33 -2.95 16 2 C 0.25 5.70 1.93 -69.09 -0.13 5.56 16 3 H 0.06 1.31 4.77 -51.93 -0.25 1.07 16 4 C -0.53 -13.33 8.06 -34.44 -0.28 -13.61 16 5 H 0.06 1.60 7.78 -52.48 -0.41 1.19 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -22.87 11.32 55.43 0.63 -22.24 16 8 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.59 -12.59 2.75 -175.27 -0.48 -13.08 16 13 C 0.09 1.83 9.30 59.85 0.56 2.39 16 14 C 0.52 10.81 6.86 -10.98 -0.08 10.74 16 15 O -0.58 -13.17 15.55 5.55 0.09 -13.08 16 16 C -0.11 -1.90 1.65 -91.53 -0.15 -2.05 16 17 H 0.10 1.99 6.14 -51.93 -0.32 1.67 16 18 C -0.14 -2.32 5.10 -26.63 -0.14 -2.46 16 19 C 0.07 0.94 6.74 37.18 0.25 1.19 16 20 O -0.37 -5.69 10.52 -35.23 -0.37 -6.06 16 21 C 0.09 1.34 1.16 -90.29 -0.10 1.24 16 22 C -0.12 -1.45 7.50 -26.08 -0.20 -1.65 16 23 C -0.14 -1.59 7.73 -25.85 -0.20 -1.79 16 24 C -0.16 -2.19 6.91 -26.07 -0.18 -2.37 16 25 C -0.10 -1.65 4.00 -26.66 -0.11 -1.76 16 26 H 0.03 0.72 7.41 -51.93 -0.38 0.33 16 27 H 0.01 0.25 8.00 -51.92 -0.42 -0.16 16 28 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 29 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.47 7.30 -51.93 -0.38 1.09 16 32 H 0.06 1.10 7.53 -51.93 -0.39 0.71 16 33 H 0.09 1.45 6.85 -51.93 -0.36 1.09 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.82 7.84 -51.93 -0.41 0.42 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.08 0.95 7.61 -51.93 -0.40 0.55 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.09 7.57 -51.93 -0.39 0.69 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.40 7.74 -51.93 -0.40 1.00 16 44 H 0.08 1.23 7.31 -51.93 -0.38 0.85 16 LS Contribution 337.30 15.07 5.08 5.08 Total: -1.00 -27.60 337.30 -7.88 -35.48 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.28 Total: 4.84 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.52 Total: -5.91 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.15 Total: -35.32 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.28 Total: -19.15 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.60 -7.88 -35.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896883539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.840 kcal (2) G-P(sol) polarization free energy of solvation -27.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds