Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46892 * 2 1 4 4 C 1.50692 * 109.47344 * 239.99857 * 2 1 3 5 5 H 1.08004 * 120.00019 * 240.00371 * 4 2 1 6 6 C 1.37875 * 120.00600 * 59.99819 * 4 2 1 7 7 N 1.31522 * 119.99320 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00641 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46961 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47257 * 119.99936 * 8 6 4 11 11 H 1.48504 * 109.47054 * 240.00391 * 8 6 4 12 12 N 1.46498 * 109.47052 * 119.99697 * 2 1 3 13 13 C 1.46499 * 120.00241 * 54.85663 * 12 2 1 14 14 C 1.34782 * 119.99921 * 234.85809 * 12 2 1 15 15 O 1.21289 * 119.99733 * 184.34317 * 14 12 2 16 16 C 1.50698 * 120.00093 * 4.34869 * 14 12 2 17 17 H 1.09000 * 109.55201 * 317.72105 * 16 14 12 18 18 C 1.53152 * 109.55548 * 77.92940 * 16 14 12 19 19 C 1.53044 * 109.40017 * 178.47598 * 18 16 14 20 20 O 1.43050 * 109.44053 * 300.66411 * 19 18 16 21 21 C 1.42574 * 113.86345 * 58.73617 * 20 19 18 22 22 C 1.53400 * 113.62076 * 171.83301 * 21 20 19 23 23 C 1.53849 * 86.97739 * 220.08760 * 22 21 20 24 24 C 1.53419 * 113.57664 * 73.90436 * 21 20 19 25 25 C 1.52816 * 112.92763 * 302.91580 * 21 20 19 26 26 H 1.09000 * 109.47602 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47389 * 300.00714 * 1 2 3 28 28 H 1.09003 * 109.47105 * 59.99846 * 1 2 3 29 29 H 0.97002 * 119.99958 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47260 * 264.67680 * 13 12 2 31 31 H 1.09003 * 109.46647 * 24.67889 * 13 12 2 32 32 H 1.08997 * 109.47158 * 144.67252 * 13 12 2 33 33 H 1.09003 * 109.48299 * 298.44788 * 18 16 14 34 34 H 1.08998 * 109.48726 * 58.48167 * 18 16 14 35 35 H 1.08991 * 109.48142 * 60.65796 * 19 18 16 36 36 H 1.09003 * 109.47439 * 180.67596 * 19 18 16 37 37 H 1.09000 * 113.63366 * 334.61086 * 22 21 20 38 38 H 1.09007 * 113.62869 * 105.57010 * 22 21 20 39 39 H 1.09001 * 113.60270 * 270.60053 * 23 22 21 40 40 H 1.09002 * 113.60406 * 139.73220 * 23 22 21 41 41 H 1.09003 * 113.62974 * 254.47064 * 24 21 20 42 42 H 1.08996 * 113.63765 * 25.34449 * 24 21 20 43 43 H 1.08995 * 109.55904 * 294.08728 * 25 21 20 44 44 H 1.09000 * 109.55954 * 173.75349 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5869 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.5739 -2.0560 1.4865 14 6 2.8763 -0.0696 2.0297 15 8 3.3419 -0.6677 2.9766 16 6 3.2572 1.3678 1.7852 17 1 3.4319 1.5229 0.7205 18 6 2.1259 2.2855 2.2581 19 6 2.5320 3.7453 2.0432 20 8 3.7272 4.0203 2.7795 21 6 4.8305 3.1926 2.4184 22 6 6.1555 3.6187 3.0633 23 6 6.8217 3.2960 1.7145 24 6 5.4521 3.5552 1.0635 25 6 4.5310 1.7018 2.5704 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7095 1.1617 -3.4844 30 1 0.7282 -2.0246 2.1735 31 1 1.2716 -2.5443 0.5600 32 1 2.3914 -2.6150 1.9418 33 1 1.2220 2.0719 1.6875 34 1 1.9364 2.1128 3.3175 35 1 2.7103 3.9206 0.9823 36 1 1.7325 4.3998 2.3905 37 1 6.1930 4.6755 3.3274 38 1 6.4757 2.9664 3.8758 39 1 7.1568 2.2623 1.6295 40 1 7.5870 4.0153 1.4226 41 1 5.2065 2.8519 0.2678 42 1 5.2939 4.5941 0.7741 43 1 4.3829 1.4649 3.6239 44 1 5.3650 1.1201 2.1776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896883539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = -84.757191 kcal Electronic energy + Delta-G solvation = -23974.706060 eV Core-core repulsion = 20698.789413 eV Total energy + Delta-G solvation = -3275.916646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88609 -40.41941 -37.39792 -37.29708 -34.75800 -34.57790 -31.01770 -30.51169 -28.59615 -27.27883 -26.72320 -25.49937 -24.78042 -23.26643 -22.27645 -19.74573 -19.52567 -18.51389 -18.13555 -17.50747 -17.12663 -16.66605 -16.34040 -16.04980 -15.98297 -15.41207 -14.98127 -14.53479 -14.47094 -14.17540 -13.95355 -13.63023 -13.50685 -13.23493 -13.07774 -12.92599 -12.78661 -12.72681 -12.55604 -12.39692 -12.20067 -12.19305 -12.01164 -11.87573 -11.70816 -11.50908 -11.25676 -11.05147 -10.65832 -10.52323 -10.26862 -9.41096 -8.16316 -6.30679 1.39287 1.44016 1.52412 1.68473 2.28352 2.45176 2.81222 3.11781 3.50033 3.55116 3.62562 3.79076 3.84166 3.88028 4.06442 4.21610 4.28014 4.46964 4.52811 4.60559 4.62516 4.66480 4.70941 4.78854 4.82917 4.85622 4.89889 4.91943 4.96865 5.01202 5.03769 5.05282 5.08514 5.19599 5.34444 5.39236 5.43872 5.55797 5.72469 5.97767 6.19333 6.31348 6.61604 6.81885 7.27128 7.42854 8.86495 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.006040 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.950568 B = 4634.843110 C = 5189.122302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.258 3.742 3 H 0.049 0.951 4 C -0.545 4.545 5 H 0.048 0.952 6 C 0.032 3.968 7 N -0.904 5.904 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.280 1.280 12 N -0.597 5.597 13 C 0.093 3.907 14 C 0.510 3.490 15 O -0.597 6.597 16 C -0.101 4.101 17 H 0.089 0.911 18 C -0.136 4.136 19 C 0.068 3.932 20 O -0.376 6.376 21 C 0.083 3.917 22 C -0.113 4.113 23 C -0.130 4.130 24 C -0.166 4.166 25 C -0.095 4.095 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.076 0.924 29 H 0.267 0.733 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 6.352 6.441 10.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.156 3.844 3 H 0.066 0.934 4 C -0.583 4.583 5 H 0.066 0.934 6 C -0.169 4.169 7 N -0.543 5.543 8 Si 0.776 3.224 9 H -0.201 1.201 10 H -0.203 1.203 11 H -0.205 1.205 12 N -0.326 5.326 13 C -0.049 4.049 14 C 0.299 3.701 15 O -0.480 6.480 16 C -0.122 4.122 17 H 0.107 0.893 18 C -0.175 4.175 19 C -0.008 4.008 20 O -0.295 6.295 21 C 0.044 3.956 22 C -0.150 4.150 23 C -0.168 4.168 24 C -0.204 4.204 25 C -0.133 4.133 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.251 6.280 6.896 10.703 hybrid contribution -0.147 -1.042 -1.338 1.702 sum 5.103 5.238 5.559 9.186 Atomic orbital electron populations 1.21956 0.97152 0.99998 1.00665 1.18945 0.91991 0.92915 0.80509 0.93362 1.21568 1.32074 1.13197 0.91469 0.93411 1.25445 0.94905 0.95535 1.01060 1.69937 1.36596 1.23223 1.24500 0.85634 0.78236 0.78653 0.79872 1.20110 1.20335 1.20539 1.48318 1.44175 1.15482 1.24629 1.21451 0.99123 0.83233 1.01136 1.20890 0.78132 0.89515 0.81588 1.90557 1.56379 1.68451 1.32622 1.21270 0.97684 0.91270 1.01987 0.89278 1.22076 0.97466 0.95945 1.01973 1.22573 0.87518 0.94265 0.96468 1.87884 1.19919 1.58239 1.63492 1.22859 0.86686 0.89206 0.96887 1.23008 0.91286 1.03017 0.97737 1.22706 0.96048 1.02593 0.95421 1.23555 0.97686 1.02437 0.96693 1.21577 0.96081 0.95003 1.00651 0.94674 0.95132 0.90571 0.92396 0.92598 0.90710 0.92560 0.90456 0.91236 0.92860 0.86471 0.88140 0.90234 0.89965 0.88902 0.92451 0.88724 0.91187 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.03 8.89 71.98 0.64 -5.39 16 2 C 0.26 11.73 1.93 44.24 0.09 11.81 16 3 H 0.05 2.29 4.77 -2.39 -0.01 2.28 16 4 C -0.54 -27.50 8.06 25.60 0.21 -27.29 16 5 H 0.05 2.50 7.78 -2.91 -0.02 2.48 16 6 C 0.03 1.59 5.30 84.65 0.45 2.04 16 7 N -0.90 -46.36 11.32 21.45 0.24 -46.11 16 8 Si 0.95 40.73 29.54 68.60 2.03 42.75 16 9 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 N -0.60 -25.47 2.75 -826.81 -2.28 -27.74 16 13 C 0.09 3.60 9.30 127.77 1.19 4.78 16 14 C 0.51 21.50 6.86 87.66 0.60 22.10 16 15 O -0.60 -27.45 15.55 -3.06 -0.05 -27.50 16 16 C -0.10 -3.65 1.65 -11.38 -0.02 -3.67 16 17 H 0.09 3.50 6.14 -2.39 -0.01 3.48 16 18 C -0.14 -4.37 5.10 30.66 0.16 -4.22 16 19 C 0.07 1.89 6.74 72.00 0.49 2.37 16 20 O -0.38 -10.95 10.52 -148.98 -1.57 -12.52 16 21 C 0.08 2.29 1.16 -10.58 -0.01 2.28 16 22 C -0.11 -2.48 7.50 31.01 0.23 -2.24 16 23 C -0.13 -2.70 7.73 31.17 0.24 -2.46 16 24 C -0.17 -4.22 6.91 31.02 0.21 -4.01 16 25 C -0.10 -3.06 4.00 30.64 0.12 -2.94 16 26 H 0.03 1.47 7.41 -2.39 -0.02 1.45 16 27 H 0.03 1.18 8.00 -2.38 -0.02 1.16 16 28 H 0.08 3.62 6.07 -2.39 -0.01 3.61 16 29 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.87 7.30 -2.39 -0.02 2.85 16 32 H 0.06 2.16 7.53 -2.39 -0.02 2.14 16 33 H 0.08 2.59 6.85 -2.39 -0.02 2.57 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 1.51 7.84 -2.39 -0.02 1.49 16 36 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 1.65 8.09 -2.38 -0.02 1.63 16 39 H 0.08 1.73 7.61 -2.39 -0.02 1.71 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.65 7.57 -2.39 -0.02 1.63 16 42 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.07 2.40 7.74 -2.39 -0.02 2.39 16 44 H 0.07 2.37 7.31 -2.39 -0.02 2.36 16 Total: -1.00 -57.18 337.30 3.94 -53.24 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.97 Total: 24.71 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 4.59 Total: -6.84 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -2.03 Total: -73.85 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.62 Total: -40.02 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -57.18 3.94 -53.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896883539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.518 kcal (2) G-P(sol) polarization free energy of solvation -57.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds