Wall clock time and date at job start Tue Mar 31 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.46498 * 120.00302 * 299.99454 * 12 2 1 14 14 C 1.34774 * 119.99941 * 120.00776 * 12 2 1 15 15 O 1.21290 * 119.99953 * 359.97438 * 14 12 2 16 16 C 1.50701 * 120.00272 * 179.97438 * 14 12 2 17 17 H 1.08998 * 109.55320 * 299.79691 * 16 14 12 18 18 C 1.53154 * 109.55008 * 59.99803 * 16 14 12 19 19 C 1.53043 * 109.39341 * 178.47326 * 18 16 14 20 20 O 1.43040 * 109.45112 * 300.66997 * 19 18 16 21 21 C 1.42583 * 113.85822 * 58.73626 * 20 19 18 22 22 C 1.53400 * 113.62285 * 171.83505 * 21 20 19 23 23 C 1.53850 * 86.97325 * 220.09129 * 22 21 20 24 24 C 1.53422 * 113.57824 * 73.89697 * 21 20 19 25 25 C 1.52810 * 112.92382 * 302.91275 * 21 20 19 26 26 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 28 28 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 29 29 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46952 * 90.00255 * 13 12 2 31 31 H 1.08996 * 109.47624 * 210.00774 * 13 12 2 32 32 H 1.09005 * 109.46962 * 330.01182 * 13 12 2 33 33 H 1.09001 * 109.48556 * 298.45085 * 18 16 14 34 34 H 1.08999 * 109.48628 * 58.47861 * 18 16 14 35 35 H 1.09004 * 109.47674 * 60.66505 * 19 18 16 36 36 H 1.08995 * 109.47794 * 180.67111 * 19 18 16 37 37 H 1.09005 * 113.63027 * 334.60961 * 22 21 20 38 38 H 1.09000 * 113.63128 * 105.56562 * 22 21 20 39 39 H 1.09001 * 113.59712 * 270.59375 * 23 22 21 40 40 H 1.08997 * 113.60261 * 139.72617 * 23 22 21 41 41 H 1.08995 * 113.63462 * 254.47917 * 24 21 20 42 42 H 1.08999 * 113.62739 * 25.43099 * 24 21 20 43 43 H 1.08995 * 109.56513 * 294.08483 * 25 21 20 44 44 H 1.09009 * 109.56134 * 173.75472 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0358 -2.0833 15 8 3.0860 1.1255 -1.8916 16 6 3.2960 -0.7463 -3.3135 17 1 3.9048 -1.6008 -3.0180 18 6 2.1064 -1.2289 -4.1488 19 6 2.6206 -1.9163 -5.4158 20 8 3.4089 -0.9930 -6.1721 21 6 4.5298 -0.4735 -5.4602 22 6 5.4802 0.3574 -6.3318 23 6 6.6354 -0.3140 -5.5692 24 6 5.6734 -1.4828 -5.2952 25 6 4.1375 0.2194 -4.1560 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 0.7088 1.1615 3.4843 30 1 0.7375 -2.1445 -1.9993 31 1 2.4628 -2.5820 -1.9862 32 1 1.5294 -2.5969 -0.4707 33 1 1.5157 -1.9356 -3.5659 34 1 1.4855 -0.3763 -4.4238 35 1 3.2319 -2.7757 -5.1404 36 1 1.7748 -2.2497 -6.0171 37 1 5.4444 0.0957 -7.3893 38 1 5.4069 1.4308 -6.1573 39 1 6.9357 0.2241 -4.6700 40 1 7.4794 -0.5831 -6.2042 41 1 5.7555 -1.8892 -4.2871 42 1 5.6909 -2.2531 -6.0661 43 1 3.5545 1.1130 -4.3784 44 1 5.0365 0.4960 -3.6049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896883541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:18 Heat of formation + Delta-G solvation = -63.870085 kcal Electronic energy + Delta-G solvation = -23539.479591 eV Core-core repulsion = 20264.468677 eV Total energy + Delta-G solvation = -3275.010913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77876 -38.94392 -36.39601 -35.38417 -33.82314 -32.56608 -29.54339 -29.32244 -26.26894 -25.89270 -25.29517 -24.98160 -23.80235 -21.83208 -20.53737 -18.56766 -18.29160 -16.80005 -16.57586 -16.18036 -15.95403 -15.33940 -15.04196 -14.81437 -14.34286 -14.07404 -13.55272 -13.34207 -12.99156 -12.85519 -12.47220 -12.42990 -12.18261 -11.80994 -11.64463 -11.60095 -11.26155 -11.12768 -11.02790 -10.94508 -10.83963 -10.81382 -10.69479 -10.46314 -10.26623 -10.17298 -10.02091 -9.48721 -9.19452 -8.79984 -8.42893 -7.59235 -6.08276 -4.16558 3.26310 3.31671 3.32284 3.38103 3.72361 3.90309 4.37403 4.46558 4.49449 4.67190 4.71065 4.89018 4.90890 5.06136 5.17278 5.22730 5.40859 5.41956 5.55332 5.61690 5.63116 5.65726 5.76189 5.78122 5.80950 5.88160 5.92100 5.98734 6.13696 6.22056 6.24168 6.37234 6.41375 6.74844 6.82830 7.06002 7.26671 7.42049 7.53115 7.70701 8.00889 8.19299 8.53064 8.81991 9.05974 9.49961 10.96964 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027640 B = 0.004303 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.774308 B = 6505.669005 C = 6779.440847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.591 5.591 13 C 0.082 3.918 14 C 0.509 3.491 15 O -0.552 6.552 16 C -0.106 4.106 17 H 0.091 0.909 18 C -0.158 4.158 19 C 0.065 3.935 20 O -0.369 6.369 21 C 0.092 3.908 22 C -0.121 4.121 23 C -0.139 4.139 24 C -0.164 4.164 25 C -0.101 4.101 26 H 0.029 0.971 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.264 0.736 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.283 -6.960 -15.741 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.322 5.322 13 C -0.062 4.062 14 C 0.295 3.705 15 O -0.431 6.431 16 C -0.128 4.128 17 H 0.109 0.891 18 C -0.196 4.196 19 C -0.011 4.011 20 O -0.288 6.288 21 C 0.053 3.947 22 C -0.159 4.159 23 C -0.177 4.177 24 C -0.201 4.201 25 C -0.139 4.139 26 H 0.048 0.952 27 H 0.111 0.889 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.281 -6.172 -15.645 17.628 hybrid contribution 0.235 -0.740 1.261 1.481 sum 5.516 -6.912 -14.384 16.885 Atomic orbital electron populations 1.22075 0.98221 0.99337 1.00757 1.18927 0.90858 0.94524 0.79968 0.91964 1.21275 1.31919 1.13022 0.90348 0.92361 1.24894 0.94932 0.94972 0.98949 1.69874 1.36252 1.22535 1.23866 0.86553 0.79223 0.79562 0.82026 1.21145 1.20237 1.20273 1.48201 1.48973 1.11481 1.23537 1.21728 0.98609 0.83602 1.02226 1.20280 0.79184 0.87061 0.83963 1.90643 1.58428 1.17136 1.76876 1.21321 0.97667 0.99407 0.94385 0.89101 1.22425 0.97837 1.02413 0.96943 1.22521 0.94665 0.91286 0.92656 1.87913 1.40314 1.61275 1.39319 1.22760 0.84565 0.94609 0.92783 1.22994 0.93812 0.99593 0.99478 1.22720 0.96543 0.97585 1.00819 1.23530 0.96709 0.97501 1.02378 1.21623 1.00793 0.98207 0.93277 0.95209 0.88880 0.97071 0.92619 0.93643 0.92731 0.90193 0.89125 0.90655 0.93163 0.88902 0.89322 0.90592 0.89661 0.90978 0.91116 0.89574 0.90028 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 2 C 0.26 6.59 2.64 -69.08 -0.18 6.41 16 3 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -14.19 7.99 -34.44 -0.28 -14.47 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.59 -12.51 2.75 -175.26 -0.48 -12.99 16 13 C 0.08 1.35 7.80 59.85 0.47 1.81 16 14 C 0.51 10.51 7.08 -10.99 -0.08 10.43 16 15 O -0.55 -13.69 15.26 5.55 0.08 -13.61 16 16 C -0.11 -1.61 1.72 -91.53 -0.16 -1.77 16 17 H 0.09 1.26 6.90 -51.93 -0.36 0.90 16 18 C -0.16 -2.04 4.99 -26.63 -0.13 -2.18 16 19 C 0.07 0.72 6.74 37.18 0.25 0.97 16 20 O -0.37 -4.80 10.53 -35.23 -0.37 -5.17 16 21 C 0.09 1.13 1.16 -90.29 -0.10 1.02 16 22 C -0.12 -1.28 7.50 -26.08 -0.20 -1.48 16 23 C -0.14 -1.33 7.73 -25.85 -0.20 -1.53 16 24 C -0.16 -1.70 6.91 -26.08 -0.18 -1.88 16 25 C -0.10 -1.47 3.80 -26.67 -0.10 -1.57 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.05 0.66 6.99 -51.93 -0.36 0.29 16 31 H 0.05 0.73 6.00 -51.93 -0.31 0.42 16 32 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 33 H 0.09 1.08 4.58 -51.93 -0.24 0.84 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.50 7.84 -51.93 -0.41 0.09 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 39 H 0.08 0.83 7.61 -51.93 -0.40 0.44 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.75 7.57 -51.93 -0.39 0.35 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.33 7.97 -51.93 -0.41 0.91 16 44 H 0.08 1.21 7.31 -51.92 -0.38 0.83 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -31.00 334.04 -7.95 -38.95 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.17 Total: 2.06 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -0.65 Total: -5.71 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.15 Total: -37.49 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.29 Total: -18.78 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.00 -7.95 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896883541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.917 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds