Wall clock time and date at job start Tue Mar 31 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47267 * 2 1 4 4 C 1.50706 * 109.47240 * 240.00022 * 2 1 3 5 5 H 1.07992 * 120.00075 * 239.99792 * 4 2 1 6 6 C 1.37871 * 119.99810 * 59.99984 * 4 2 1 7 7 N 1.31521 * 120.00219 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00078 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47189 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47379 * 120.00214 * 8 6 4 11 11 H 1.48500 * 109.47243 * 239.99701 * 8 6 4 12 12 N 1.46505 * 109.47426 * 119.99883 * 2 1 3 13 13 C 1.46506 * 119.99537 * 59.99830 * 12 2 1 14 14 C 1.34769 * 120.00435 * 240.00010 * 12 2 1 15 15 O 1.21283 * 120.00095 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00203 * 179.97438 * 14 12 2 17 17 H 1.09002 * 109.55401 * 59.99974 * 16 14 12 18 18 C 1.53158 * 109.55146 * 299.79933 * 16 14 12 19 19 C 1.53047 * 109.40701 * 181.42823 * 18 16 14 20 20 O 1.43045 * 109.44289 * 59.32205 * 19 18 16 21 21 C 1.42581 * 113.85632 * 301.27429 * 20 19 18 22 22 C 1.53425 * 113.56563 * 286.10951 * 21 20 19 23 23 C 1.53843 * 86.97276 * 220.04718 * 22 21 20 24 24 C 1.53397 * 113.62198 * 188.19378 * 21 20 19 25 25 C 1.52808 * 112.93779 * 57.09490 * 21 20 19 26 26 H 1.09003 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46912 * 299.99648 * 1 2 3 28 28 H 1.08996 * 109.47251 * 59.99606 * 1 2 3 29 29 H 0.96999 * 120.00028 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47305 * 269.99938 * 13 12 2 31 31 H 1.09006 * 109.46971 * 30.00577 * 13 12 2 32 32 H 1.08997 * 109.46586 * 149.99867 * 13 12 2 33 33 H 1.08997 * 109.48008 * 301.40502 * 18 16 14 34 34 H 1.08998 * 109.48075 * 61.43247 * 18 16 14 35 35 H 1.08998 * 109.47822 * 179.31767 * 19 18 16 36 36 H 1.09003 * 109.47390 * 299.33030 * 19 18 16 37 37 H 1.09004 * 113.63051 * 334.57220 * 22 21 20 38 38 H 1.09000 * 113.63098 * 105.52451 * 22 21 20 39 39 H 1.08994 * 113.60315 * 270.59688 * 23 22 21 40 40 H 1.09008 * 113.67749 * 139.73975 * 23 22 21 41 41 H 1.09007 * 113.62511 * 254.42193 * 24 21 20 42 42 H 1.08999 * 113.63240 * 25.28078 * 24 21 20 43 43 H 1.09007 * 109.56082 * 186.24266 * 25 21 20 44 44 H 1.08996 * 109.56809 * 65.90457 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.0858 1.1256 1.8917 16 6 3.2951 -0.7459 3.3141 17 1 3.9007 -1.6029 3.0192 18 6 2.1050 -1.2232 4.1516 19 6 2.6182 -1.9125 5.4180 20 8 3.4119 -0.9923 6.1726 21 6 4.5338 -0.4780 5.4585 22 6 5.6724 -1.4927 5.2917 23 6 6.6404 -0.3282 5.5636 24 6 5.4896 0.3485 6.3282 25 6 4.1424 0.2163 4.1548 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.7089 1.1614 -3.4844 30 1 0.7376 -2.1444 1.9993 31 1 1.5295 -2.5969 0.4707 32 1 2.4629 -2.5819 1.9863 33 1 1.4885 -0.3677 4.4278 34 1 1.5101 -1.9272 3.5698 35 1 1.7719 -2.2419 6.0209 36 1 3.2252 -2.7747 5.1419 37 1 5.6878 -2.2629 6.0629 38 1 5.7507 -1.8997 4.2836 39 1 6.9415 0.2081 4.6638 40 1 7.4850 -0.5998 6.1969 41 1 5.4210 1.4223 6.1537 42 1 5.4534 0.0882 7.3860 43 1 5.0417 0.4888 3.6022 44 1 3.5636 1.1125 4.3779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896883542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:20 Heat of formation + Delta-G solvation = -64.064143 kcal Electronic energy + Delta-G solvation = -23538.969480 eV Core-core repulsion = 20263.950152 eV Total energy + Delta-G solvation = -3275.019328 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77871 -38.94461 -36.39568 -35.38508 -33.82266 -32.56817 -29.54292 -29.32520 -26.26783 -25.89322 -25.29926 -24.98394 -23.80420 -21.83521 -20.53880 -18.56823 -18.29159 -16.79989 -16.57870 -16.18431 -15.95473 -15.33937 -15.04479 -14.81761 -14.33975 -14.07028 -13.55344 -13.34231 -12.98913 -12.85981 -12.47669 -12.43151 -12.18494 -11.80924 -11.64892 -11.60931 -11.26183 -11.12988 -11.03896 -10.94153 -10.83999 -10.80402 -10.69746 -10.46288 -10.24943 -10.18569 -10.02172 -9.48771 -9.18056 -8.80189 -8.43651 -7.59220 -6.08797 -4.16943 3.24206 3.31770 3.34071 3.38272 3.72282 3.90222 4.37161 4.46512 4.49403 4.67179 4.70973 4.89017 4.90854 5.06039 5.17142 5.22416 5.40821 5.41880 5.55263 5.61635 5.63069 5.65704 5.76208 5.78130 5.80868 5.88120 5.92045 5.98837 6.13672 6.21937 6.24087 6.37199 6.41303 6.74620 6.82640 7.05857 7.26598 7.41903 7.53124 7.70683 8.00815 8.18972 8.52879 8.82173 9.05964 9.49780 10.96520 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.004304 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.495866 B = 6504.638219 C = 6779.790892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.591 5.591 13 C 0.082 3.918 14 C 0.509 3.491 15 O -0.552 6.552 16 C -0.106 4.106 17 H 0.091 0.909 18 C -0.158 4.158 19 C 0.065 3.935 20 O -0.369 6.369 21 C 0.092 3.908 22 C -0.163 4.163 23 C -0.139 4.139 24 C -0.121 4.121 25 C -0.101 4.101 26 H 0.029 0.971 27 H 0.010 0.990 28 H 0.093 0.907 29 H 0.263 0.737 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -6.987 15.765 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.322 5.322 13 C -0.062 4.062 14 C 0.295 3.705 15 O -0.431 6.431 16 C -0.128 4.128 17 H 0.109 0.891 18 C -0.196 4.196 19 C -0.011 4.011 20 O -0.288 6.288 21 C 0.053 3.947 22 C -0.201 4.201 23 C -0.177 4.177 24 C -0.159 4.159 25 C -0.139 4.139 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.302 -6.205 15.673 17.671 hybrid contribution 0.221 -0.719 -1.270 1.476 sum 5.522 -6.924 14.403 16.909 Atomic orbital electron populations 1.22073 0.98208 0.99342 1.00766 1.18942 0.90872 0.94542 0.79999 0.91953 1.21352 1.31752 1.12982 0.90325 0.92242 1.24897 0.94948 0.94978 0.98976 1.69895 1.36392 1.22598 1.23645 0.86445 0.78597 0.79577 0.82789 1.19841 1.20920 1.20906 1.48202 1.48964 1.11487 1.23540 1.21727 0.98610 0.83598 1.02228 1.20272 0.79183 0.87056 0.83962 1.90641 1.58424 1.17131 1.76890 1.21321 0.97643 0.99438 0.94383 0.89114 1.22419 0.97832 1.02416 0.96926 1.22523 0.94588 0.91334 0.92683 1.87914 1.40044 1.61576 1.39285 1.22757 0.84557 0.94643 0.92761 1.23533 0.96702 0.97499 1.02380 1.22717 0.96533 0.97597 1.00813 1.22991 0.93796 0.99608 0.99485 1.21623 1.00748 0.98235 0.93295 0.95205 0.97063 0.88875 0.92735 0.93643 0.90189 0.92736 0.90656 0.89143 0.88898 0.93159 0.89571 0.91115 0.89667 0.90978 0.90605 0.89319 0.90038 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 2 C 0.26 6.57 2.64 -69.08 -0.18 6.39 16 3 H 0.06 1.86 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -14.15 7.99 -34.44 -0.28 -14.43 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.19 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.59 -12.50 2.75 -175.25 -0.48 -12.99 16 13 C 0.08 1.35 7.80 59.85 0.47 1.81 16 14 C 0.51 10.51 7.08 -10.99 -0.08 10.43 16 15 O -0.55 -13.69 15.27 5.56 0.08 -13.60 16 16 C -0.11 -1.61 1.71 -91.53 -0.16 -1.77 16 17 H 0.09 1.26 6.88 -51.93 -0.36 0.90 16 18 C -0.16 -2.04 4.99 -26.63 -0.13 -2.17 16 19 C 0.07 0.72 6.74 37.18 0.25 0.97 16 20 O -0.37 -4.80 10.53 -35.23 -0.37 -5.17 16 21 C 0.09 1.13 1.16 -90.29 -0.10 1.02 16 22 C -0.16 -1.70 6.90 -26.07 -0.18 -1.88 16 23 C -0.14 -1.33 7.73 -25.86 -0.20 -1.53 16 24 C -0.12 -1.28 7.50 -26.09 -0.20 -1.47 16 25 C -0.10 -1.47 3.81 -26.67 -0.10 -1.57 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.05 0.66 6.98 -51.93 -0.36 0.29 16 31 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 32 H 0.05 0.73 6.00 -51.93 -0.31 0.42 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.07 4.60 -51.93 -0.24 0.84 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.50 7.84 -51.93 -0.41 0.09 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.75 7.56 -51.93 -0.39 0.35 16 39 H 0.08 0.83 7.61 -51.93 -0.40 0.44 16 40 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.21 7.31 -51.93 -0.38 0.83 16 44 H 0.08 1.33 7.97 -51.93 -0.41 0.91 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -31.05 334.05 -7.95 -39.00 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.17 Total: 1.99 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -0.65 Total: -5.71 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.15 Total: -37.48 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.29 Total: -18.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.05 -7.95 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896883542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.065 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds