Wall clock time and date at job start Tue Mar 31 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47267 * 2 1 4 4 C 1.50706 * 109.47240 * 240.00022 * 2 1 3 5 5 H 1.07992 * 120.00075 * 239.99792 * 4 2 1 6 6 C 1.37871 * 119.99810 * 59.99984 * 4 2 1 7 7 N 1.31521 * 120.00219 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00078 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47189 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47379 * 120.00214 * 8 6 4 11 11 H 1.48500 * 109.47243 * 239.99701 * 8 6 4 12 12 N 1.46505 * 109.47426 * 119.99883 * 2 1 3 13 13 C 1.46506 * 119.99537 * 59.99830 * 12 2 1 14 14 C 1.34769 * 120.00435 * 240.00010 * 12 2 1 15 15 O 1.21283 * 120.00095 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00203 * 179.97438 * 14 12 2 17 17 H 1.09002 * 109.55401 * 59.99974 * 16 14 12 18 18 C 1.53158 * 109.55146 * 299.79933 * 16 14 12 19 19 C 1.53047 * 109.40701 * 181.42823 * 18 16 14 20 20 O 1.43045 * 109.44289 * 59.32205 * 19 18 16 21 21 C 1.42581 * 113.85632 * 301.27429 * 20 19 18 22 22 C 1.53425 * 113.56563 * 286.10951 * 21 20 19 23 23 C 1.53843 * 86.97276 * 220.04718 * 22 21 20 24 24 C 1.53397 * 113.62198 * 188.19378 * 21 20 19 25 25 C 1.52808 * 112.93779 * 57.09490 * 21 20 19 26 26 H 1.09003 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46912 * 299.99648 * 1 2 3 28 28 H 1.08996 * 109.47251 * 59.99606 * 1 2 3 29 29 H 0.96999 * 120.00028 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47305 * 269.99938 * 13 12 2 31 31 H 1.09006 * 109.46971 * 30.00577 * 13 12 2 32 32 H 1.08997 * 109.46586 * 149.99867 * 13 12 2 33 33 H 1.08997 * 109.48008 * 301.40502 * 18 16 14 34 34 H 1.08998 * 109.48075 * 61.43247 * 18 16 14 35 35 H 1.08998 * 109.47822 * 179.31767 * 19 18 16 36 36 H 1.09003 * 109.47390 * 299.33030 * 19 18 16 37 37 H 1.09004 * 113.63051 * 334.57220 * 22 21 20 38 38 H 1.09000 * 113.63098 * 105.52451 * 22 21 20 39 39 H 1.08994 * 113.60315 * 270.59688 * 23 22 21 40 40 H 1.09008 * 113.67749 * 139.73975 * 23 22 21 41 41 H 1.09007 * 113.62511 * 254.42193 * 24 21 20 42 42 H 1.08999 * 113.63240 * 25.28078 * 24 21 20 43 43 H 1.09007 * 109.56082 * 186.24266 * 25 21 20 44 44 H 1.08996 * 109.56809 * 65.90457 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.0858 1.1256 1.8917 16 6 3.2951 -0.7459 3.3141 17 1 3.9007 -1.6029 3.0192 18 6 2.1050 -1.2232 4.1516 19 6 2.6182 -1.9125 5.4180 20 8 3.4119 -0.9923 6.1726 21 6 4.5338 -0.4780 5.4585 22 6 5.6724 -1.4927 5.2917 23 6 6.6404 -0.3282 5.5636 24 6 5.4896 0.3485 6.3282 25 6 4.1424 0.2163 4.1548 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.7089 1.1614 -3.4844 30 1 0.7376 -2.1444 1.9993 31 1 1.5295 -2.5969 0.4707 32 1 2.4629 -2.5819 1.9863 33 1 1.4885 -0.3677 4.4278 34 1 1.5101 -1.9272 3.5698 35 1 1.7719 -2.2419 6.0209 36 1 3.2252 -2.7747 5.1419 37 1 5.6878 -2.2629 6.0629 38 1 5.7507 -1.8997 4.2836 39 1 6.9415 0.2081 4.6638 40 1 7.4850 -0.5998 6.1969 41 1 5.4210 1.4223 6.1537 42 1 5.4534 0.0882 7.3860 43 1 5.0417 0.4888 3.6022 44 1 3.5636 1.1125 4.3779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896883542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:20 Heat of formation + Delta-G solvation = -83.177663 kcal Electronic energy + Delta-G solvation = -23539.798304 eV Core-core repulsion = 20263.950152 eV Total energy + Delta-G solvation = -3275.848153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88535 -40.40585 -37.32281 -37.20240 -35.26637 -34.31158 -31.26986 -30.48328 -27.70933 -27.33595 -26.71715 -26.29573 -24.73968 -23.20257 -21.97769 -19.89657 -19.51839 -18.51883 -18.01572 -17.42464 -17.24315 -16.84801 -16.39058 -15.97359 -15.88392 -15.32483 -14.80066 -14.67986 -14.41472 -14.27312 -13.80558 -13.67850 -13.57447 -13.23296 -13.04261 -12.94471 -12.80260 -12.68497 -12.61514 -12.27075 -12.19499 -12.17378 -12.12096 -11.83881 -11.69034 -11.47664 -11.20236 -11.03842 -10.64281 -10.50977 -10.21496 -9.34083 -8.16106 -6.33031 1.39874 1.41659 1.52895 1.76620 2.28201 2.47268 2.85358 3.12005 3.50182 3.51338 3.60682 3.80389 3.82971 3.88047 4.04971 4.20719 4.26038 4.47452 4.51876 4.57190 4.63829 4.72716 4.75438 4.78273 4.84489 4.86476 4.87750 4.92868 4.99808 5.03206 5.04885 5.06825 5.14861 5.22276 5.35916 5.44420 5.46591 5.58381 5.65721 6.02293 6.14778 6.36124 6.75381 6.81549 7.30179 7.46590 8.88603 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.004304 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.495866 B = 6504.638219 C = 6779.790892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.260 3.740 3 H 0.005 0.995 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.597 5.597 13 C 0.077 3.923 14 C 0.497 3.503 15 O -0.607 6.607 16 C -0.094 4.094 17 H 0.115 0.885 18 C -0.153 4.153 19 C 0.066 3.934 20 O -0.382 6.382 21 C 0.087 3.913 22 C -0.155 4.155 23 C -0.134 4.134 24 C -0.123 4.123 25 C -0.098 4.098 26 H 0.048 0.952 27 H 0.017 0.983 28 H 0.066 0.934 29 H 0.264 0.736 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 -10.183 16.994 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.023 0.977 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.327 5.327 13 C -0.065 4.065 14 C 0.286 3.714 15 O -0.489 6.489 16 C -0.115 4.115 17 H 0.132 0.868 18 C -0.191 4.191 19 C -0.010 4.010 20 O -0.302 6.302 21 C 0.048 3.952 22 C -0.192 4.192 23 C -0.172 4.172 24 C -0.160 4.160 25 C -0.136 4.136 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.011 -9.448 16.929 20.297 hybrid contribution -0.026 0.346 -1.636 1.672 sum 5.985 -9.102 15.293 18.776 Atomic orbital electron populations 1.21854 0.97139 1.00154 0.99762 1.18538 0.91640 0.92144 0.81927 0.97724 1.21602 1.31835 1.13054 0.91057 0.91916 1.25764 0.95062 0.95632 1.02123 1.70042 1.37400 1.23959 1.24366 0.85381 0.78213 0.78479 0.78775 1.18716 1.19947 1.21273 1.48207 1.48873 1.13366 1.22254 1.22026 1.01213 0.80614 1.02685 1.21320 0.78244 0.86698 0.85133 1.90609 1.60263 1.19807 1.78255 1.21300 0.98840 0.99450 0.91909 0.86768 1.22429 0.96610 1.02158 0.97865 1.22697 0.95502 0.91158 0.91678 1.87910 1.40435 1.62095 1.39732 1.22766 0.85080 0.95777 0.91613 1.23514 0.95304 0.97491 1.02914 1.22705 0.96825 0.96960 1.00690 1.23052 0.93787 0.99183 1.00025 1.21553 0.99774 0.97500 0.94788 0.93253 0.96412 0.91500 0.92667 0.91109 0.91225 0.89087 0.92709 0.87560 0.86659 0.90964 0.88039 0.91089 0.90385 0.88964 0.91372 0.88179 0.91035 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.97 71.98 0.65 -5.74 16 2 C 0.26 13.71 2.64 44.24 0.12 13.83 16 3 H 0.00 0.30 6.90 -2.39 -0.02 0.29 16 4 C -0.54 -29.25 7.99 25.60 0.20 -29.05 16 5 H 0.06 3.30 7.33 -2.91 -0.02 3.27 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 8 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 N -0.60 -25.29 2.75 -826.77 -2.28 -27.57 16 13 C 0.08 2.32 7.80 127.77 1.00 3.31 16 14 C 0.50 20.95 7.08 87.66 0.62 21.57 16 15 O -0.61 -31.94 15.27 -3.04 -0.05 -31.99 16 16 C -0.09 -2.75 1.71 -11.38 -0.02 -2.77 16 17 H 0.11 2.83 6.88 -2.39 -0.02 2.81 16 18 C -0.15 -3.60 4.99 30.66 0.15 -3.45 16 19 C 0.07 1.21 6.74 72.00 0.49 1.69 16 20 O -0.38 -8.97 10.53 -148.98 -1.57 -10.54 16 21 C 0.09 1.98 1.16 -10.58 -0.01 1.97 16 22 C -0.15 -2.75 6.90 31.02 0.21 -2.54 16 23 C -0.13 -2.28 7.73 31.16 0.24 -2.04 16 24 C -0.12 -2.42 7.50 31.01 0.23 -2.18 16 25 C -0.10 -2.87 3.81 30.64 0.12 -2.75 16 26 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 27 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.07 1.80 6.98 -2.39 -0.02 1.79 16 31 H 0.07 2.29 7.02 -2.38 -0.02 2.27 16 32 H 0.09 2.08 6.00 -2.39 -0.01 2.07 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 2.14 4.60 -2.39 -0.01 2.13 16 35 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.06 7.84 -2.39 -0.02 1.04 16 37 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.07 1.27 7.56 -2.39 -0.02 1.25 16 39 H 0.08 1.44 7.61 -2.39 -0.02 1.42 16 40 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.07 1.41 8.09 -2.38 -0.02 1.40 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 2.19 7.31 -2.38 -0.02 2.17 16 44 H 0.05 1.82 7.97 -2.39 -0.02 1.80 16 Total: -1.00 -71.05 334.05 3.80 -67.25 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.98 Total: 17.95 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 4.44 Total: -6.93 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -2.03 Total: -80.75 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.61 Total: -42.53 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -71.05 3.80 -67.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896883542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.929 kcal (2) G-P(sol) polarization free energy of solvation -71.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds