Wall clock time and date at job start Tue Mar 31 2020 06:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99754 * 2 1 4 4 O 1.20819 * 120.00320 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99701 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.47193 * 60.00328 * 5 3 2 7 7 C 1.52998 * 109.47486 * 300.00521 * 5 3 2 8 8 C 1.53000 * 109.46751 * 299.99749 * 7 5 3 9 9 C 1.53000 * 109.47412 * 299.99761 * 8 7 5 10 10 C 1.52996 * 109.46711 * 60.00091 * 9 8 7 11 11 C 1.52996 * 109.47612 * 300.00134 * 10 9 8 12 12 H 1.09004 * 109.46868 * 299.99847 * 11 10 9 13 13 C 1.52998 * 109.47255 * 180.02562 * 11 10 9 14 14 N 1.46496 * 109.47372 * 64.99986 * 13 11 10 15 15 C 1.36940 * 120.00149 * 89.99482 * 14 13 11 16 16 H 1.08007 * 119.99899 * 223.09488 * 15 14 13 17 17 C 1.38804 * 119.99881 * 43.10068 * 15 14 13 18 18 N 1.31618 * 120.00098 * 199.36479 * 17 15 14 19 19 Si 1.86802 * 120.00232 * 19.36847 * 17 15 14 20 20 H 1.48505 * 109.46863 * 264.68519 * 19 17 15 21 21 H 1.48503 * 109.46875 * 24.68219 * 19 17 15 22 22 H 1.48496 * 109.47342 * 144.68634 * 19 17 15 23 23 C 1.46499 * 119.99862 * 270.00015 * 14 13 11 24 24 C 1.53002 * 117.50005 * 191.36412 * 23 14 13 25 25 C 1.53002 * 60.00048 * 252.51166 * 24 23 14 26 26 H 1.08998 * 109.46784 * 60.00094 * 1 2 3 27 27 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47201 * 299.99738 * 1 2 3 29 29 H 1.08994 * 109.47358 * 60.00222 * 7 5 3 30 30 H 1.09004 * 109.46980 * 180.02562 * 7 5 3 31 31 H 1.09001 * 109.46745 * 60.00689 * 8 7 5 32 32 H 1.09001 * 109.46675 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46905 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47221 * 300.00199 * 9 8 7 35 35 H 1.09001 * 109.47077 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46880 * 59.99974 * 10 9 8 37 37 H 1.09000 * 109.47427 * 304.99789 * 13 11 10 38 38 H 1.09002 * 109.47212 * 184.99599 * 13 11 10 39 39 H 0.97004 * 120.00196 * 180.02562 * 18 17 15 40 40 H 1.08998 * 115.55074 * 337.07450 * 23 14 13 41 41 H 1.09001 * 117.50066 * 359.97438 * 24 23 14 42 42 H 1.08996 * 117.50162 * 145.02373 * 24 23 14 43 43 H 1.09000 * 117.49636 * 252.51175 * 25 24 23 44 44 H 1.08995 * 117.52461 * 107.48486 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7807 -0.8892 7 6 4.1129 0.5815 1.2501 8 6 3.5654 1.2753 2.4990 9 6 3.9993 2.7425 2.4990 10 6 3.4527 3.4358 1.2494 11 6 4.0001 2.7421 0.0005 12 1 5.0886 2.7992 0.0008 13 6 3.4539 3.4359 -1.2490 14 7 3.9675 4.8065 -1.3105 15 6 5.1448 5.0682 -1.9592 16 1 5.8677 5.7380 -1.5171 17 6 5.4090 4.4726 -3.1848 18 7 6.6459 4.4019 -3.6291 19 14 4.0092 3.7716 -4.2038 20 1 3.8796 2.3173 -3.9326 21 1 2.7424 4.4573 -3.8427 22 1 4.2927 3.9828 -5.6461 23 6 3.2217 5.8973 -0.6778 24 6 3.6573 7.3289 -0.9966 25 6 3.9487 6.7293 0.3806 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.8040 -0.4637 1.2501 30 1 5.2015 0.6390 1.2506 31 1 2.4769 1.2181 2.4986 32 1 3.9545 0.7810 3.3892 33 1 3.6096 3.2366 3.3890 34 1 5.0877 2.7996 2.4994 35 1 3.7613 4.4812 1.2496 36 1 2.3641 3.3788 1.2491 37 1 2.3650 3.4576 -1.2060 38 1 3.7717 2.8888 -2.1366 39 1 6.8306 3.9861 -4.4858 40 1 2.1570 5.7157 -0.5313 41 1 4.4991 7.4593 -1.6767 42 1 2.8792 8.0895 -1.0599 43 1 3.3621 7.0954 1.2232 44 1 4.9817 6.4650 0.6065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929465620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:48 Heat of formation + Delta-G solvation = -64.501830 kcal Electronic energy + Delta-G solvation = -24302.375719 eV Core-core repulsion = 21027.337412 eV Total energy + Delta-G solvation = -3275.038308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10750 -39.61055 -38.35697 -37.21016 -35.36798 -33.71102 -32.31846 -31.40629 -28.65190 -27.10410 -25.63445 -24.54688 -23.06736 -22.35375 -22.23601 -21.58377 -20.54936 -18.47062 -18.33269 -17.50617 -17.32597 -16.85415 -16.80446 -16.30008 -15.48560 -15.11527 -14.96734 -14.78567 -14.59576 -14.31477 -14.19329 -13.61688 -13.52422 -13.12175 -13.06968 -12.94859 -12.83199 -12.70121 -12.58024 -12.21633 -12.04463 -11.96956 -11.88729 -11.78066 -11.50508 -11.36632 -11.03252 -10.94353 -10.76467 -10.70501 -10.55261 -8.46521 -8.20181 -5.64049 1.21966 1.23912 1.35432 1.48313 1.80259 2.38942 3.00666 3.17814 3.38658 3.68882 3.78416 3.81931 4.13596 4.20977 4.27977 4.32202 4.34039 4.36286 4.41861 4.45874 4.53440 4.55983 4.65652 4.67721 4.72659 4.80705 4.90044 4.94126 5.01008 5.02814 5.17057 5.20679 5.28707 5.29782 5.34710 5.39694 5.43506 5.55157 5.63195 5.78147 5.97267 6.22467 6.81598 7.03212 7.64146 8.10522 8.98248 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.007479 C = 0.006439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.042881 B = 3742.810454 C = 4347.790591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.470 3.530 4 O -0.517 6.517 5 C -0.081 4.081 6 H 0.102 0.898 7 C -0.103 4.103 8 C -0.115 4.115 9 C -0.117 4.117 10 C -0.117 4.117 11 C -0.078 4.078 12 H 0.063 0.937 13 C 0.137 3.863 14 N -0.581 5.581 15 C -0.242 4.242 16 H 0.041 0.959 17 C -0.008 4.008 18 N -0.944 5.944 19 Si 0.933 3.067 20 H -0.276 1.276 21 H -0.268 1.268 22 H -0.306 1.306 23 C 0.111 3.889 24 C -0.197 4.197 25 C -0.196 4.196 26 H 0.054 0.946 27 H 0.132 0.868 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 -9.738 12.185 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.314 3.686 4 O -0.405 6.405 5 C -0.101 4.101 6 H 0.120 0.880 7 C -0.140 4.140 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.154 4.154 11 C -0.099 4.099 12 H 0.082 0.918 13 C 0.012 3.988 14 N -0.300 5.300 15 C -0.372 4.372 16 H 0.059 0.941 17 C -0.205 4.205 18 N -0.588 5.588 19 Si 0.762 3.238 20 H -0.203 1.203 21 H -0.193 1.193 22 H -0.234 1.234 23 C 0.003 3.997 24 C -0.235 4.235 25 C -0.236 4.236 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.452 -9.523 12.033 19.148 hybrid contribution -0.200 0.081 -1.227 1.245 sum -11.652 -9.442 10.806 18.485 Atomic orbital electron populations 1.23516 0.75185 1.05548 1.02328 1.86506 1.24694 1.32842 1.83881 1.23929 0.92211 0.81234 0.71225 1.90546 1.67634 1.36601 1.45765 1.21266 0.87003 0.98960 1.02887 0.87992 1.21545 1.01677 0.99579 0.91208 1.21551 0.99928 0.95495 0.98229 1.21550 1.00628 0.95814 0.97461 1.21717 1.01032 0.99825 0.92858 1.21415 0.99926 0.91361 0.97153 0.91826 1.21470 0.97631 0.84665 0.95008 1.43675 1.23021 1.01476 1.61844 1.18405 0.93058 1.27003 0.98760 0.94137 1.26043 0.97213 0.99621 0.97590 1.69946 1.19702 1.47666 1.21502 0.85974 0.81980 0.78345 0.77498 1.20277 1.19301 1.23396 1.21272 0.93813 0.85639 0.98938 1.23134 1.03652 0.97440 0.99291 1.23243 1.01217 1.06620 0.92530 0.92693 0.85001 0.91717 0.89060 0.89784 0.93234 0.89391 0.91327 0.92375 0.91877 0.91221 0.91604 0.95916 0.92793 0.87703 0.91176 0.87567 0.87458 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.11 10.47 -51.46 -0.54 -9.65 16 3 C 0.47 14.18 5.46 71.24 0.39 14.57 16 4 O -0.52 -17.89 11.12 21.99 0.24 -17.65 16 5 C -0.08 -2.45 2.65 -11.54 -0.03 -2.48 16 6 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 7 C -0.10 -2.35 5.39 30.59 0.16 -2.19 16 8 C -0.11 -2.50 5.70 30.59 0.17 -2.33 16 9 C -0.12 -3.04 5.92 30.59 0.18 -2.86 16 10 C -0.12 -3.87 4.50 30.59 0.14 -3.73 16 11 C -0.08 -2.88 2.14 -10.80 -0.02 -2.90 16 12 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 13 C 0.14 6.03 3.62 86.38 0.31 6.34 16 14 N -0.58 -27.90 2.16 -678.04 -1.46 -29.36 16 15 C -0.24 -13.70 8.38 84.03 0.70 -13.00 16 16 H 0.04 2.56 7.71 -2.91 -0.02 2.54 16 17 C -0.01 -0.45 5.32 84.86 0.45 0.00 16 18 N -0.94 -58.84 13.97 21.65 0.30 -58.53 16 19 Si 0.93 47.60 25.11 68.60 1.72 49.32 16 20 H -0.28 -13.38 6.74 99.48 0.67 -12.71 16 21 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.31 -15.66 7.11 99.48 0.71 -14.96 16 23 C 0.11 4.59 5.21 44.99 0.23 4.83 16 24 C -0.20 -7.75 9.82 30.60 0.30 -7.45 16 25 C -0.20 -7.22 8.70 30.60 0.27 -6.96 16 26 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 27 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.09 1.73 8.11 -2.39 -0.02 1.71 16 30 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.05 1.14 7.22 -2.39 -0.02 1.12 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 2.28 5.11 -2.39 -0.01 2.27 16 36 H 0.07 2.39 5.52 -2.38 -0.01 2.38 16 37 H 0.07 2.88 5.56 -2.39 -0.01 2.87 16 38 H 0.02 1.10 3.79 -2.39 -0.01 1.09 16 39 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.11 4.03 8.11 -2.39 -0.02 4.01 16 41 H 0.07 3.24 6.96 -2.39 -0.02 3.23 16 42 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -67.36 331.24 5.67 -61.70 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.94 Total: 20.63 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.46 Total: -16.46 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -1.16 Total: -87.90 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.29 Total: -27.29 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.72 Total: 49.32 kcal Total: -67.36 5.67 -61.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929465620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.804 kcal (2) G-P(sol) polarization free energy of solvation -67.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds