Wall clock time and date at job start Tue Mar 31 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00183 * 2 1 4 4 O 1.20821 * 119.99749 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99926 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.46809 * 60.00189 * 5 3 2 7 7 C 1.52999 * 109.47380 * 300.00161 * 5 3 2 8 8 C 1.53000 * 109.47025 * 179.97438 * 7 5 3 9 9 C 1.53004 * 109.46770 * 60.00387 * 8 7 5 10 10 C 1.52999 * 109.47031 * 299.99609 * 9 8 7 11 11 C 1.52995 * 109.47095 * 180.02562 * 5 3 2 12 12 H 1.09001 * 109.46899 * 59.99992 * 11 5 3 13 13 C 1.52999 * 109.47046 * 300.00253 * 11 5 3 14 14 N 1.46503 * 109.47287 * 175.00046 * 13 11 5 15 15 C 1.36931 * 120.00243 * 89.99736 * 14 13 11 16 16 H 1.08001 * 120.00333 * 217.80933 * 15 14 13 17 17 C 1.38814 * 120.00047 * 37.53202 * 15 14 13 18 18 N 1.31626 * 119.99777 * 20.71682 * 17 15 14 19 19 Si 1.86791 * 120.00273 * 200.71740 * 17 15 14 20 20 H 1.48502 * 109.47199 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47395 * 120.00154 * 19 17 15 22 22 H 1.48508 * 109.47076 * 239.99678 * 19 17 15 23 23 C 1.46505 * 119.99930 * 270.00102 * 14 13 11 24 24 C 1.52997 * 117.49996 * 194.36579 * 23 14 13 25 25 C 1.53003 * 117.49859 * 125.70437 * 23 14 13 26 26 H 1.08995 * 109.47039 * 300.00093 * 1 2 3 27 27 H 1.09008 * 109.46898 * 60.00126 * 1 2 3 28 28 H 1.08993 * 109.47081 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47058 * 300.00280 * 7 5 3 30 30 H 1.09008 * 109.46687 * 60.00010 * 7 5 3 31 31 H 1.08998 * 109.47182 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47352 * 300.00143 * 8 7 5 33 33 H 1.09001 * 109.47052 * 59.99433 * 9 8 7 34 34 H 1.09002 * 109.47297 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47172 * 300.00294 * 10 9 8 36 36 H 1.08996 * 109.47328 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47641 * 55.00004 * 13 11 5 38 38 H 1.09002 * 109.47376 * 295.00119 * 13 11 5 39 39 H 0.96994 * 119.99997 * 174.88853 * 18 17 15 40 40 H 1.09006 * 115.54786 * 340.03525 * 23 14 13 41 41 H 1.08997 * 117.49792 * 359.97438 * 24 23 14 42 42 H 1.08997 * 117.49892 * 145.02117 * 24 23 14 43 43 H 1.09000 * 117.49442 * 214.97877 * 25 23 14 44 44 H 1.09001 * 117.49909 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7805 -0.8891 7 6 4.1130 0.5814 1.2501 8 6 5.6409 0.6609 1.2503 9 6 6.0752 2.1280 1.2500 10 6 5.5286 2.8214 0.0004 11 6 4.0002 2.7419 0.0011 12 1 3.6102 3.2358 0.8911 13 6 3.4536 3.4358 -1.2481 14 7 3.7668 4.8658 -1.1891 15 6 4.9386 5.3326 -1.7219 16 1 5.4786 6.1262 -1.2269 17 6 5.4354 4.7821 -2.8954 18 7 4.6316 4.1291 -3.7078 19 14 7.2446 4.9678 -3.3215 20 1 7.9283 5.7392 -2.2524 21 1 7.8663 3.6242 -3.4378 22 1 7.3775 5.6882 -4.6133 23 6 2.8263 5.7962 -0.5597 24 6 3.0315 7.2903 -0.8175 25 6 3.3628 6.6974 0.5543 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.7229 1.0757 2.1399 30 1 3.8038 -0.4639 1.2501 31 1 6.0303 0.1674 2.1407 32 1 6.0306 0.1664 0.3606 33 1 5.6854 2.6225 2.1397 34 1 7.1637 2.1848 1.2506 35 1 5.9183 2.3269 -0.8893 36 1 5.8376 3.8666 0.0004 37 1 2.3728 3.3023 -1.2945 38 1 3.9120 2.9999 -2.1359 39 1 4.9611 3.8086 -4.5619 40 1 1.8011 5.4376 -0.4672 41 1 3.8665 7.5810 -1.4549 42 1 2.1414 7.9147 -0.8941 43 1 2.6904 6.9319 1.3795 44 1 4.4154 6.5976 0.8193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929465621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:51 Heat of formation + Delta-G solvation = -55.818961 kcal Electronic energy + Delta-G solvation = -24039.775669 eV Core-core repulsion = 20765.113879 eV Total energy + Delta-G solvation = -3274.661790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46310 -38.11850 -36.60879 -36.06033 -33.51653 -31.47332 -30.92433 -29.29891 -27.58380 -25.53528 -23.65684 -22.97397 -21.25814 -20.97016 -20.35248 -19.65510 -19.12156 -17.16186 -16.40966 -16.32502 -15.91914 -15.25972 -14.44263 -14.32372 -14.01568 -13.75102 -13.69212 -13.34403 -13.13396 -12.64077 -12.23900 -12.02829 -11.88164 -11.76418 -11.37587 -11.13061 -10.94371 -10.85351 -10.74151 -10.58244 -10.54036 -10.46326 -10.26422 -10.21644 -10.00580 -9.68596 -9.65034 -9.50997 -9.08389 -9.01589 -8.31992 -6.34744 -5.75060 -3.30327 2.58898 3.01146 3.33431 3.43270 3.45348 4.45948 4.90857 4.99698 5.06695 5.08796 5.20122 5.27734 5.35627 5.42591 5.45597 5.62172 5.64754 5.70172 5.82983 5.92365 5.99994 6.04894 6.08064 6.18563 6.27511 6.35273 6.43282 6.48211 6.58324 6.59018 6.61904 6.64114 6.76158 7.01424 7.08389 7.14675 7.25699 7.28383 7.38569 7.78556 7.89324 8.15061 8.58004 9.24564 9.88031 10.47253 11.24494 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.007073 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.136379 B = 3957.760691 C = 4592.201914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.490 6.490 5 C -0.073 4.073 6 H 0.104 0.896 7 C -0.106 4.106 8 C -0.115 4.115 9 C -0.124 4.124 10 C -0.101 4.101 11 C -0.083 4.083 12 H 0.062 0.938 13 C 0.142 3.858 14 N -0.546 5.546 15 C -0.251 4.251 16 H 0.060 0.940 17 C 0.017 3.983 18 N -0.887 5.887 19 Si 0.889 3.111 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.290 1.290 23 C 0.135 3.865 24 C -0.201 4.201 25 C -0.229 4.229 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.254 0.746 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -8.776 8.697 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.304 3.696 4 O -0.376 6.376 5 C -0.092 4.092 6 H 0.122 0.878 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.162 4.162 10 C -0.138 4.138 11 C -0.104 4.104 12 H 0.080 0.920 13 C 0.016 3.984 14 N -0.261 5.261 15 C -0.381 4.381 16 H 0.077 0.923 17 C -0.183 4.183 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.217 1.217 23 C 0.025 3.975 24 C -0.240 4.240 25 C -0.270 4.270 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.108 -8.640 8.517 12.524 hybrid contribution 0.695 0.234 -0.314 0.798 sum -2.413 -8.406 8.203 11.991 Atomic orbital electron populations 1.23168 0.77328 1.03007 1.02398 1.86519 1.22720 1.34452 1.84634 1.24101 0.92362 0.80921 0.72185 1.90638 1.67088 1.35903 1.43971 1.21254 0.85765 1.01187 1.01022 0.87803 1.21484 0.96444 0.99990 0.96428 1.21516 0.94603 0.97648 1.01457 1.21668 0.99867 0.94957 0.99710 1.21512 0.94261 1.02454 0.95621 1.21715 0.96118 0.89836 1.02712 0.91962 1.21286 0.98067 0.83582 0.95436 1.43341 1.18021 1.00665 1.64086 1.18896 0.96770 1.18999 1.03395 0.92264 1.25155 0.97663 1.00217 0.95253 1.69917 1.33754 1.40856 1.08438 0.86434 0.85992 0.77597 0.78108 1.20009 1.21311 1.21722 1.21100 0.92938 0.86864 0.96603 1.23072 1.02515 0.99041 0.99375 1.23337 1.01205 1.10555 0.91886 0.92278 0.92007 0.88685 0.91899 0.91441 0.92372 0.91876 0.92564 0.92661 0.92658 0.89225 0.93383 0.89066 0.93535 0.89474 0.88482 0.91123 0.91259 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.38 10.47 -39.26 -0.41 -5.79 16 3 C 0.46 7.90 6.93 36.01 0.25 8.15 16 4 O -0.49 -9.76 13.42 -18.75 -0.25 -10.01 16 5 C -0.07 -1.19 2.16 -91.77 -0.20 -1.39 16 6 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 7 C -0.11 -1.42 5.13 -26.73 -0.14 -1.55 16 8 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 9 C -0.12 -1.87 5.92 -26.73 -0.16 -2.02 16 10 C -0.10 -1.91 4.76 -26.71 -0.13 -2.03 16 11 C -0.08 -1.60 1.57 -90.60 -0.14 -1.75 16 12 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 13 C 0.14 3.32 4.57 -4.04 -0.02 3.30 16 14 N -0.55 -13.47 2.66 -165.65 -0.44 -13.91 16 15 C -0.25 -6.56 5.98 -15.06 -0.09 -6.65 16 16 H 0.06 1.59 7.20 -52.49 -0.38 1.21 16 17 C 0.02 0.46 4.97 -17.43 -0.09 0.38 16 18 N -0.89 -24.91 11.42 55.49 0.63 -24.28 16 19 Si 0.89 21.03 29.60 -169.99 -5.03 16.00 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.13 3.06 6.61 -67.93 -0.45 2.62 16 24 C -0.20 -4.25 9.81 -26.69 -0.26 -4.52 16 25 C -0.23 -4.64 10.08 -26.69 -0.27 -4.91 16 26 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 27 H 0.06 0.74 8.13 -51.92 -0.42 0.31 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.80 8.11 -51.92 -0.42 0.38 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.93 6.34 -51.93 -0.33 1.60 16 37 H 0.05 1.17 5.32 -51.93 -0.28 0.90 16 38 H 0.09 2.38 5.48 -51.93 -0.28 2.10 16 39 H 0.25 6.92 8.32 -40.82 -0.34 6.58 16 40 H 0.09 1.96 8.10 -51.93 -0.42 1.54 16 41 H 0.10 2.23 6.96 -51.93 -0.36 1.87 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.08 1.76 7.98 -51.93 -0.41 1.34 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -28.93 343.50 -8.62 -37.55 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.51 Total: 5.80 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -0.78 Total: -10.55 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.19 Total: -38.19 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.66 Total: -15.80 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.93 -8.62 -37.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929465621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.266 kcal (2) G-P(sol) polarization free energy of solvation -28.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds